FvH4_2g16830

homoserine

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
14639917 .. 14641488
1572 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g16830.t1

Sequence Viewer

Length: 1104 bp
ATGGCTGTCTGCCACCACCAAGCTCCCTTCAAGCTCTTCTCACCCCTCCCACCACCAAACCCAAAACCCATCTTCCGATGCAACCTCTCCCTCCCCTCCCGACCCACCATCCTCACCGCCGACCCCGAACCCCTCTTCACCTCCGTCAAGACCTTCGCCCCCGCCACCGTCGCCAACCTCGGCCCCGGCTTCGACTTCCTCGGCTGCGCCGTCGACGGCCTCGGCGACTTCGTCTCCCTCACCGTCGACCCCCAAGTCCTCCCCGGCGAGATCGCCATCTCCGAGATCTCCGGCGACCACAACTCCAAGAAGCTGAGCAAGAATCCCCTCTGGAACTGCGCCGGGATCGCCGCCATCGAGGTCATGAAGATGCTCGGCGTCCGCAACGTCGGCCTGTCCCTCTCCCTCGAGAAAGGCCTGCCTTTGGGTAGCGGCCTCGGATCCAGCGCCGCCAGCGCAGCCGCCGCAGCCGTCGCTGTCAACGAGATTTTCGGCGGGAAATTAGGTGTGGAGGAGCTGGTCCACGCGGGGCTCAAATCGGAGGAGAAGGTGTCCGGTTACCACGCCGATAACATCGCTCCGGCGTTGATGGGAGGCTTCGTTCTGATCCAGAACTATGAGCCGTTGGATTTGCTCCGGTTGAGCTTTCCGTTAGAAAAGGAGCTGATATTTGTGCTGGTGAGTCCAGACTTCGAAGCTCCGACGAAGAAGATGAGGGCGGCGCTGCCGACGGAGATAGGGATGGCCCACCACGTGTGGAATTCCAGCCAGGCCGGAGCTCTGGTGGCGGCGGTGCTTCAAGGCGACGTGGCGAGGCTTGGGAAGGCGTTGTCGTCGGATAAGATTGTGGAGCCGAAGAGGGCTCCTCTGATTCCGGGAATGGAGGCGGTGAAGAAGGCTGCCATTGAGGCTGGAGCTTTGGGGTGCACTATCAGCGGGGCTGGGCCCACGGCGGTTGCGGTGACGGACAATGCCGAGAAGGGGAAGGAAATTGGAGAGAGGATGGTGGCCGCTTTCTTGAAAGATGGGAACTTGAAAGCTGTGGCGAGTGTGAATAGGCTGGACAGAGTTGGTGCTAGGCTTGTTAGTAGCATTCCCAGATGA

Protein Analysis

368

Amino Acids

38.19

Weight (kDa)

7.05

Isoelectric Point (pI)

37.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GHMP_kinases_N PF00288 119 - 199 1.9e-16 GHMP kinases N terminal domain
GHMP_kinases_C PF08544 262 - 338 2.5e-12 GHMP kinases C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015166)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 254
AccI GTMKAC 2 cut(s) 213, 246
AccII CGCG 1 cut(s) 527
AclWI GGATC 4 cut(s) 353, 435, 448, 601
AcoI YGGCCR 1 cut(s) 1008
AcsI RAATTY 1 cut(s) 760
AcvI CACGTG 1 cut(s) 754
AcyI GRCGYC 1 cut(s) 378
AdeI CACNNNGTG 1 cut(s) 754
AfiI CCNNNNNNNGG 2 cut(s) 424, 981
AflIII ACRYGT 1 cut(s) 753
AgsI TTSAA 4 cut(s) 31, 800, 1021, 1036
AjiI CACGTC 1 cut(s) 808
AjnI CCWGG 1 cut(s) 768
AloI GAACNNNNNNTCC 2 cut(s) 585, 617
Alw21I GWGCWC 2 cut(s) 781, 929
Alw26I GTCTC 1 cut(s) 238
Alw44I GTGCAC 1 cut(s) 925
AlwI GGATC 4 cut(s) 353, 435, 448, 601
Ama87I CYCGRG 1 cut(s) 407
AoxI GGCC 9 cut(s) 181, 217, 391, 415, 433, 744, 771, 944, 1008
ApaI GGGCCC 1 cut(s) 948
ApaLI GTGCAC 1 cut(s) 925
ApeKI GCWGC 5 cut(s) 204, 458, 467, 724, 899
ApoI RAATTY 1 cut(s) 760
AspLEI GCGC 5 cut(s) 209, 341, 449, 458, 724
AspS9I GGNCC 5 cut(s) 182, 520, 745, 944, 945
AsuC2I CCSGG 4 cut(s) 186, 264, 343, 876
AsuHPI GGTGA 7 cut(s) 33, 106, 130, 232, 691, 901, 973
AsuII TTCGAA 1 cut(s) 693
AvaI CYCGRG 1 cut(s) 407
AvaII GGWCC 1 cut(s) 520
BaeGI GKGCMC 2 cut(s) 929, 948
BamHI GGATCC 1 cut(s) 440
BanII GRGCYC 4 cut(s) 534, 781, 865, 948
BbrPI CACGTG 1 cut(s) 754
Bbv12I GWGCWC 2 cut(s) 781, 929
BbvI GCAGC 5 cut(s) 191, 470, 479, 711, 886
BccI CCATC 8 cut(s) 77, 116, 284, 362, 583, 736, 997, 1019
BceAI ACGGC 5 cut(s) 194, 232, 455, 607, 966
BciT130I CCWGG 1 cut(s) 770
BcnI CCSGG 4 cut(s) 186, 264, 343, 876
BcoDI GTCTC 1 cut(s) 238
BfaI CTAG 1 cut(s) 1077
BfoI RGCGCY 2 cut(s) 450, 725
BglI GCCNNNNNGGC 1 cut(s) 908
BglII AGATCT 1 cut(s) 285
BlpI GCTNAGC 1 cut(s) 314
Bme1390I CCNGG 5 cut(s) 186, 264, 343, 770, 876
Bme18I GGWCC 1 cut(s) 520
BmeT110I CYCGRG 1 cut(s) 407
BmgBI CACGTC 1 cut(s) 808
BmgT120I GGNCC 5 cut(s) 182, 520, 745, 944, 945
BmiI GGNNCC 5 cut(s) 184, 442, 852, 864, 946
BmrFI CCNGG 5 cut(s) 186, 264, 343, 770, 876
BmsI GCATC 2 cut(s) 68, 360
BplI GAGNNNNNCTC 2 cut(s) 850, 882
BpmI CTGGAG 1 cut(s) 933
Bpu1102I GCTNAGC 1 cut(s) 314
Bpu14I TTCGAA 1 cut(s) 693
BpuMI CCSGG 4 cut(s) 186, 264, 343, 876
BsaAI YACGTR 1 cut(s) 754
BsaBI GATNNNNATC 1 cut(s) 275
BsaHI GRCGYC 1 cut(s) 378
BsaJI CCNNGG 7 cut(s) 178, 184, 199, 220, 262, 436, 948
BsaWI WCCGGW 2 cut(s) 554, 636
Bsc4I CCNNNNNNNGG 2 cut(s) 424, 981
Bse8I GATNNNNATC 1 cut(s) 275
BseBI CCWGG 1 cut(s) 770
BseDI CCNNGG 7 cut(s) 178, 184, 199, 220, 262, 436, 948
BseGI GGATG 3 cut(s) 108, 747, 1008
BseJI GATNNNNATC 1 cut(s) 275
BseLI CCNNNNNNNGG 2 cut(s) 424, 981
BseMII CTCAG 1 cut(s) 305
BseRI GAGGAG 3 cut(s) 527, 557, 855
BseSI GKGCMC 2 cut(s) 929, 948
BseXI GCAGC 5 cut(s) 191, 470, 479, 711, 886
BseYI CCCAGC 1 cut(s) 941
Bsh1236I CGCG 1 cut(s) 527
BshFI GGCC 9 cut(s) 183, 219, 393, 417, 435, 746, 773, 946, 1010
BsiHKAI GWGCWC 2 cut(s) 781, 929
BsiHKCI CYCGRG 1 cut(s) 407
BsiSI CCGG 9 cut(s) 186, 264, 291, 342, 555, 581, 637, 774, 875
BslFI GGGAC 1 cut(s) 382
BslI CCNNNNNNNGG 2 cut(s) 424, 981
BsmAI GTCTC 1 cut(s) 238
BsmBI CGTCTC 1 cut(s) 238
BsmFI GGGAC 1 cut(s) 382
BsmI GAATGC 1 cut(s) 1092
BsnI GGCC 9 cut(s) 183, 219, 393, 417, 435, 746, 773, 946, 1010
BsoBI CYCGRG 1 cut(s) 407
Bsp119I TTCGAA 1 cut(s) 693
Bsp120I GGGCCC 1 cut(s) 944
Bsp1286I GDGCHC 5 cut(s) 534, 781, 865, 929, 948
Bsp143I GATC 5 cut(s) 270, 285, 345, 440, 606
Bsp1720I GCTNAGC 1 cut(s) 314
BspANI GGCC 9 cut(s) 183, 219, 393, 417, 435, 746, 773, 946, 1010
BspCNI CTCAG 1 cut(s) 306
BspFNI CGCG 1 cut(s) 527
BspHI TCATGA 1 cut(s) 363
BspLI GGNNCC 5 cut(s) 184, 442, 852, 864, 946
BspPI GGATC 4 cut(s) 353, 435, 448, 601
BspQI GCTCTTC 1 cut(s) 41
BspT104I TTCGAA 1 cut(s) 693
BssECI CCNNGG 7 cut(s) 178, 184, 199, 220, 262, 436, 948
BssMI GATC 5 cut(s) 270, 285, 345, 440, 606
BssNI GRCGYC 1 cut(s) 378
Bst2UI CCWGG 1 cut(s) 770
Bst4CI ACNGT 2 cut(s) 169, 244
Bst6I CTCTTC 3 cut(s) 41, 140, 851
BstACI GRCGYC 1 cut(s) 378
BstBAI YACGTR 1 cut(s) 754
BstBI TTCGAA 1 cut(s) 693
BstC8I GCNNGC 2 cut(s) 419, 454
BstDEI CTNAG 1 cut(s) 314
BstDSI CCRYGG 1 cut(s) 948
BstEII GGTNACC 1 cut(s) 557
BstF5I GGATG 3 cut(s) 108, 747, 1008
BstFNI CGCG 1 cut(s) 527
BstH2I RGCGCY 2 cut(s) 450, 725
BstHHI GCGC 5 cut(s) 209, 341, 449, 458, 724
BstKTI GATC 5 cut(s) 273, 288, 348, 443, 609
BstMAI GTCTC 1 cut(s) 238
BstMBI GATC 5 cut(s) 270, 285, 345, 440, 606
BstNI CCWGG 1 cut(s) 770
BstPI GGTNACC 1 cut(s) 557
BstSCI CCNGG 5 cut(s) 184, 262, 341, 768, 874
BstSLI GKGCMC 2 cut(s) 929, 948
BstUI CGCG 1 cut(s) 527
BstV1I GCAGC 5 cut(s) 191, 470, 479, 711, 886
BstX2I RGATCY 2 cut(s) 285, 440
BstYI RGATCY 2 cut(s) 285, 440
BsuRI GGCC 9 cut(s) 183, 219, 393, 417, 435, 746, 773, 946, 1010
BtgI CCRYGG 1 cut(s) 948
BtgZI GCGATG 1 cut(s) 559
BtrI CACGTC 1 cut(s) 808
BtsCI GGATG 3 cut(s) 108, 747, 1008
Cac8I GCNNGC 2 cut(s) 419, 454
CciI TCATGA 1 cut(s) 363
CfoI GCGC 5 cut(s) 209, 341, 449, 458, 724
Cfr13I GGNCC 5 cut(s) 182, 520, 745, 944, 945
CseI GACGC 1 cut(s) 367
CspCI CAANNNNNGTGG 2 cut(s) 937, 972
CviAII CATG 1 cut(s) 364
DdeI CTNAG 1 cut(s) 314
DpnI GATC 5 cut(s) 272, 287, 347, 442, 608
DpnII GATC 5 cut(s) 270, 285, 345, 440, 606
DraIII CACNNNGTG 1 cut(s) 754
DrdI GACNNNNNNGTC 1 cut(s) 254
DseDI GACNNNNNNGTC 1 cut(s) 254
EaeI YGGCCR 1 cut(s) 1008
Eam1104I CTCTTC 3 cut(s) 41, 140, 851
EarI CTCTTC 3 cut(s) 41, 140, 851
Ecl136II GAGCTC 1 cut(s) 779
Eco147I AGGCCT 1 cut(s) 417
Eco24I GRGCYC 4 cut(s) 534, 781, 865, 948
Eco47I GGWCC 1 cut(s) 520
Eco53kI GAGCTC 1 cut(s) 779
Eco72I CACGTG 1 cut(s) 754
Eco88I CYCGRG 1 cut(s) 407
Eco91I GGTNACC 1 cut(s) 557
EcoICRI GAGCTC 1 cut(s) 779
EcoO65I GGTNACC 1 cut(s) 557
EcoRI GAATTC 1 cut(s) 760
EcoRII CCWGG 1 cut(s) 768
EcoT38I GRGCYC 4 cut(s) 534, 781, 865, 948
Esp3I CGTCTC 1 cut(s) 238
FaeI CATG 1 cut(s) 367
FaiI YATR 2 cut(s) 365, 618
FaqI GGGAC 1 cut(s) 382
FatI CATG 1 cut(s) 363
FauI CCCGC 4 cut(s) 169, 488, 520, 929
FblI GTMKAC 2 cut(s) 213, 246
FokI GGATG 3 cut(s) 95, 754, 1015
FriOI GRGCYC 4 cut(s) 534, 781, 865, 948
FspBI CTAG 1 cut(s) 1077
GlaI GCGC 5 cut(s) 208, 340, 448, 457, 723
GsaI CCCAGC 1 cut(s) 945
GsuI CTGGAG 1 cut(s) 933
HaeII RGCGCY 2 cut(s) 450, 725
HaeIII GGCC 9 cut(s) 183, 219, 393, 417, 435, 746, 773, 946, 1010
HapII CCGG 9 cut(s) 186, 264, 291, 342, 555, 581, 637, 774, 875
HgaI GACGC 1 cut(s) 367
HhaI GCGC 5 cut(s) 209, 341, 449, 458, 724
Hin1I GRCGYC 1 cut(s) 378
Hin1II CATG 1 cut(s) 367
Hin6I GCGC 5 cut(s) 207, 339, 447, 456, 722
HinP1I GCGC 5 cut(s) 207, 339, 447, 456, 722
HincII GTYRAC 3 cut(s) 214, 247, 481
HindII GTYRAC 3 cut(s) 214, 247, 481
HinfI GANTC 3 cut(s) 322, 682, 871
HpaII CCGG 9 cut(s) 186, 264, 291, 342, 555, 581, 637, 774, 875
HphI GGTGA 7 cut(s) 33, 106, 130, 232, 691, 901, 973
Hpy166II GTNNAC 5 cut(s) 214, 247, 481, 523, 927
Hpy188I TCNGA 8 cut(s) 77, 283, 440, 541, 606, 702, 838, 870
Hpy188III TCNNGA 8 cut(s) 99, 148, 331, 364, 409, 610, 686, 1018
Hpy8I GTNNAC 5 cut(s) 214, 247, 481, 523, 927
HpyAV CCTTC 7 cut(s) 37, 163, 541, 817, 889, 973, 979
HpyCH4III ACNGT 2 cut(s) 169, 244
HpyCH4IV ACGT 3 cut(s) 387, 753, 807
HpyCH4V TGCA 2 cut(s) 81, 927
HpyF3I CTNAG 1 cut(s) 314
HpySE526I ACGT 3 cut(s) 387, 753, 807
Hsp92I GRCGYC 1 cut(s) 378
Hsp92II CATG 1 cut(s) 367
HspAI GCGC 5 cut(s) 207, 339, 447, 456, 722
Kzo9I GATC 5 cut(s) 270, 285, 345, 440, 606
LguI GCTCTTC 1 cut(s) 41
Lsp1109I GCAGC 5 cut(s) 191, 470, 479, 711, 886
LweI GCATC 2 cut(s) 68, 360
MaeI CTAG 1 cut(s) 1077
MaeII ACGT 3 cut(s) 387, 753, 807
MaeIII GTNAC 2 cut(s) 557, 961
MalI GATC 5 cut(s) 272, 287, 347, 442, 608
MboI GATC 5 cut(s) 270, 285, 345, 440, 606
MboII GAAGA 8 cut(s) 28, 64, 127, 379, 718, 721, 868, 904
MflI RGATCY 2 cut(s) 285, 440
MhlI GDGCHC 5 cut(s) 534, 781, 865, 929, 948
MluCI AATT 3 cut(s) 500, 760, 990
MlyI GAGTC 1 cut(s) 691
MmeI TCCRAC 3 cut(s) 606, 725, 816
MslI CAYNNNNRTG 1 cut(s) 368
MspA1I CMGCKG 1 cut(s) 936
MspI CCGG 9 cut(s) 186, 264, 291, 342, 555, 581, 637, 774, 875
MspR9I CCNGG 5 cut(s) 186, 264, 343, 770, 876
Mva1269I GAATGC 1 cut(s) 1092
MvaI CCWGG 1 cut(s) 770
MvnI CGCG 1 cut(s) 527
NciI CCSGG 4 cut(s) 186, 264, 343, 876
NdeII GATC 5 cut(s) 270, 285, 345, 440, 606
NlaIII CATG 1 cut(s) 367
NlaIV GGNNCC 5 cut(s) 184, 442, 852, 864, 946
NmeAIII GCCGAG 5 cut(s) 159, 180, 201, 354, 1000
NmuCI GTSAC 1 cut(s) 961
NspV TTCGAA 1 cut(s) 693
PaeR7I CTCGAG 1 cut(s) 407
PagI TCATGA 1 cut(s) 363
PceI AGGCCT 1 cut(s) 417
PciSI GCTCTTC 1 cut(s) 41
PcsI WCGNNNNNNNCGW 6 cut(s) 207, 222, 228, 279, 354, 480
PctI GAATGC 1 cut(s) 1092
PfeI GAWTC 2 cut(s) 322, 871
PflFI GACNNNGTC 1 cut(s) 230
PfoI TCCNGGA 1 cut(s) 874
PleI GAGTC 1 cut(s) 690
PmaCI CACGTG 1 cut(s) 754
PmlI CACGTG 1 cut(s) 754
PpsI GAGTC 1 cut(s) 690
Ppu21I YACGTR 1 cut(s) 754
Psp124BI GAGCTC 1 cut(s) 781
Psp6I CCWGG 1 cut(s) 768
PspCI CACGTG 1 cut(s) 754
PspEI GGTNACC 1 cut(s) 557
PspFI CCCAGC 1 cut(s) 941
PspGI CCWGG 1 cut(s) 768
PspN4I GGNNCC 5 cut(s) 184, 442, 852, 864, 946
PspOMI GGGCCC 1 cut(s) 944
PspPI GGNCC 5 cut(s) 182, 520, 745, 944, 945
PsuI RGATCY 2 cut(s) 285, 440
PsyI GACNNNGTC 1 cut(s) 230
RseI CAYNNNNRTG 1 cut(s) 368
SacI GAGCTC 1 cut(s) 781
SalI GTCGAC 2 cut(s) 212, 245
SapI GCTCTTC 1 cut(s) 41
Sau3AI GATC 5 cut(s) 270, 285, 345, 440, 606
Sau96I GGNCC 5 cut(s) 182, 520, 745, 944, 945
SchI GAGTC 1 cut(s) 691
ScrFI CCNGG 5 cut(s) 186, 264, 343, 770, 876
SduI GDGCHC 5 cut(s) 534, 781, 865, 929, 948
SfaNI GCATC 2 cut(s) 68, 360
Sfr274I CTCGAG 1 cut(s) 407
SfuI TTCGAA 1 cut(s) 693
SgrDI CGTCGACG 1 cut(s) 212
SinI GGWCC 1 cut(s) 520
SlaI CTCGAG 1 cut(s) 407
SmiMI CAYNNNNRTG 1 cut(s) 368
SmlI CTYRAG 1 cut(s) 407
SmoI CTYRAG 1 cut(s) 407
Sse9I AATT 3 cut(s) 500, 760, 990
SseBI AGGCCT 1 cut(s) 417
SspMI CTAG 1 cut(s) 1077
SstI GAGCTC 1 cut(s) 781
StuI AGGCCT 1 cut(s) 417
StyD4I CCNGG 5 cut(s) 184, 262, 341, 768, 874
TaaI ACNGT 2 cut(s) 169, 244
TaiI ACGT 3 cut(s) 390, 756, 810
TaqI TCGA 6 cut(s) 192, 213, 246, 357, 408, 693
TasI AATT 3 cut(s) 500, 760, 990
TauI GCSGC 8 cut(s) 353, 435, 452, 464, 467, 722, 791, 1013
TfiI GAWTC 2 cut(s) 322, 871
TseFI GTSAC 1 cut(s) 961
TseI GCWGC 5 cut(s) 204, 458, 467, 724, 899
Tsp45I GTSAC 1 cut(s) 961
TspDTI ATGAA 1 cut(s) 380
TspGWI ACGGA 4 cut(s) 133, 639, 746, 980
Tth111I GACNNNGTC 1 cut(s) 230
VneI GTGCAC 1 cut(s) 925
VpaK11BI GGWCC 1 cut(s) 520
XapI RAATTY 1 cut(s) 760
XhoI CTCGAG 1 cut(s) 407
XmiI GTMKAC 2 cut(s) 213, 246
XspI CTAG 1 cut(s) 1077
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.