MD10G1142000.v1.1

homoserine

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Forward (+)
22777634 .. 22778743
1110 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1142000.v1.1.491

Sequence Viewer

Length: 1110 bp
ATGGCGATCTGCCACCAATCTCCGTTCAAGCTCTTCGCCGCAATCCCATCACCATCATCGAAGCCCAAACCCCTCCACCTCCGCTGCAACCTCTCCCTCCCCTCCAGACCTCCCCTCACCTCCACCGAGCCCGAACCCGTCTTCACTTCCGTCAAGGCCTTCGCCCCCGCCACCATCGCCAATCTCGGCCCCGGCTTCGACTTCTTGGGCTGCGCCGTCGACGGCCTCGGCGACTTCGTCTCTCTCACCCTCGACCCCCAGGTATCGCCGGGCGAGATCTCCATTTCCGAGATCTCCGGTGACCACAACTCCAAGAAGCTCAGCAAGAACCCTCTCTGGAACTGCGCCGGAATCGCTGCCATCGAAGTCATGAAGATGCTCGGAGTCCGATCGGTGGGCCTTTCCCTCACTCTGGAAAAGGGCTTGCCTTTGGGCTCCGGGCTCGGATCCAGTGCGGCGAGCGCGGCCGCCGCGGCTGTTGCGGTCAACGAAATTTTTGGCGGGAAATTGGGTATAGAGGAATTGGTGATCGCGGGGCTGAAATCGGAGGAGAAGGTTTCCGGTTACCACGCTGATAACATAGCTCCGGCTATTATGGGCGGGTTCGTATTGATTCGGAGCTATGAACCGTTGGATTTGATTCCGCTGATCTTTCCGGATGGTAAAGAATTGTTTTTTGTGTTGGCTACGCCGGAGTTTGAAGCTCCGACGAAGAAGATGAGAGCGGCGCTGCCTGCGGAGGTGGGGATGGCCCATCATGTCTGGAATTCGAGCCAGGCCGGGGCCCTTGTTGCGGCAGTGTTGCAGGGGGACTTGCCCGGGCTCGGCAGGGCTTTGTCGAGCGATAAGATCGTGGAGCCGCGGCGAGCTCCGCTGATTCCCGGTATGGACGCTGTAAAAAAGGCAGCAATCGAGGCCGGGGCATTCGGGTGCACCATTAGCGGGGCAGGTCCCACTGCCGTGGCGGTCACGGATGATCCCGAGAAAGGAAAGATGATCGGAGAAAAAATGGTGGCGGCCTTTCTAAAGGAGGGAAAGTTGAAGGCCGCGGCGAGTGTGAGTAGACTCGACCGGGTTGGCGCCAGACTTGTCAGCACCATTCCGAGATAA

Protein Analysis

370

Amino Acids

38.19

Weight (kDa)

7.65

Isoelectric Point (pI)

45.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GHMP_kinases_N PF00288 121 - 201 7.8e-16 GHMP kinases N terminal domain
GHMP_kinases_C PF08544 264 - 338 5.5e-12 GHMP kinases C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015166)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 938
AccB1I GGYRCC 1 cut(s) 1079
AccBSI CCGCTC 1 cut(s) 725
AccI GTMKAC 2 cut(s) 219, 1063
AccII CGCG 5 cut(s) 464, 473, 533, 862, 1049
AccIII TCCGGA 1 cut(s) 655
AclWI GGATC 3 cut(s) 441, 454, 971
AcoI YGGCCR 1 cut(s) 465
AcsI RAATTY 2 cut(s) 492, 766
AcyI GRCGYC 1 cut(s) 1080
AfiI CCNNNNNNNGG 7 cut(s) 394, 412, 781, 793, 824, 942, 986
AgsI TTSAA 3 cut(s) 28, 701, 1042
AjnI CCWGG 2 cut(s) 258, 774
AleI CACNNNNGTG 1 cut(s) 959
AluBI AGCT 6 cut(s) 31, 319, 584, 621, 704, 869
AluI AGCT 6 cut(s) 31, 319, 584, 621, 704, 869
Alw21I GWGCWC 2 cut(s) 871, 935
Alw26I GTCTC 1 cut(s) 244
Alw44I GTGCAC 1 cut(s) 931
AlwI GGATC 3 cut(s) 441, 454, 971
Ama87I CYCGRG 2 cut(s) 818, 980
Aor13HI TCCGGA 1 cut(s) 655
ApaI GGGCCC 1 cut(s) 787
ApaLI GTGCAC 1 cut(s) 931
ApeKI GCWGC 5 cut(s) 84, 210, 356, 730, 905
ApoI RAATTY 2 cut(s) 492, 766
AspLEI GCGC 5 cut(s) 215, 347, 464, 730, 1082
AspS9I GGNCC 6 cut(s) 188, 397, 751, 783, 784, 950
AsuC2I CCSGG 9 cut(s) 192, 270, 439, 781, 819, 820, 882, 919, 1073
AsuHPI GGTGA 5 cut(s) 42, 109, 238, 311, 538
AvaI CYCGRG 2 cut(s) 818, 980
AvaII GGWCC 1 cut(s) 950
BaeGI GKGCMC 2 cut(s) 787, 935
BamHI GGATCC 1 cut(s) 446
BanI GGYRCC 1 cut(s) 1079
BanII GRGCYC 6 cut(s) 132, 437, 444, 787, 825, 871
BbsI GAAGAC 1 cut(s) 133
Bbv12I GWGCWC 2 cut(s) 871, 935
BbvI GCAGC 5 cut(s) 71, 197, 343, 717, 917
BccI CCATC 7 cut(s) 55, 61, 182, 368, 653, 742, 762
BceAI ACGGC 3 cut(s) 200, 238, 944
BciT130I CCWGG 2 cut(s) 260, 776
BcnI CCSGG 9 cut(s) 192, 270, 439, 781, 819, 820, 882, 919, 1073
BcoDI GTCTC 1 cut(s) 244
BfoI RGCGCY 2 cut(s) 731, 1083
BfuAI ACCTGC 1 cut(s) 938
BglI GCCNNNNNGGC 1 cut(s) 473
BglII AGATCT 2 cut(s) 276, 291
BlpI GCTNAGC 1 cut(s) 320
Bme18I GGWCC 1 cut(s) 950
BmeT110I CYCGRG 2 cut(s) 818, 980
BmgT120I GGNCC 6 cut(s) 188, 397, 751, 783, 784, 950
BmiI GGNNCC 8 cut(s) 190, 436, 448, 784, 785, 858, 952, 1081
BmsI GCATC 1 cut(s) 366
BpiI GAAGAC 1 cut(s) 133
BpmI CTGGAG 1 cut(s) 88
Bpu1102I GCTNAGC 1 cut(s) 320
BpuMI CCSGG 9 cut(s) 192, 270, 439, 781, 819, 820, 882, 919, 1073
BsaHI GRCGYC 1 cut(s) 1080
BsaWI WCCGGW 3 cut(s) 296, 560, 655
BsaXI ACNNNNNCTCC 4 cut(s) 293, 323, 1022, 1052
Bsc4I CCNNNNNNNGG 7 cut(s) 394, 412, 781, 793, 824, 942, 986
Bse1I ACTGG 1 cut(s) 450
BseAI TCCGGA 1 cut(s) 655
BseBI CCWGG 2 cut(s) 260, 776
BseGI GGATG 3 cut(s) 664, 753, 979
BseLI CCNNNNNNNGG 7 cut(s) 394, 412, 781, 793, 824, 942, 986
BseMII CTCAG 1 cut(s) 334
BseNI ACTGG 1 cut(s) 450
BseRI GAGGAG 1 cut(s) 563
BseSI GKGCMC 2 cut(s) 787, 935
BseX3I CGGCCG 1 cut(s) 465
BseXI GCAGC 5 cut(s) 71, 197, 343, 717, 917
Bsh1236I CGCG 5 cut(s) 464, 473, 533, 862, 1049
Bsh1285I CGRYCG 3 cut(s) 392, 468, 1072
BshNI GGYRCC 1 cut(s) 1079
BsiEI CGRYCG 3 cut(s) 392, 468, 1072
BsiHKAI GWGCWC 2 cut(s) 871, 935
BsiHKCI CYCGRG 2 cut(s) 818, 980
BslFI GGGAC 2 cut(s) 824, 936
BslI CCNNNNNNNGG 7 cut(s) 394, 412, 781, 793, 824, 942, 986
BsmAI GTCTC 1 cut(s) 244
BsmBI CGTCTC 1 cut(s) 244
BsmFI GGGAC 2 cut(s) 824, 936
BsmI GAATGC 1 cut(s) 923
BsoBI CYCGRG 2 cut(s) 818, 980
Bsp120I GGGCCC 1 cut(s) 783
Bsp1286I GDGCHC 7 cut(s) 132, 437, 444, 787, 825, 871, 935
Bsp13I TCCGGA 1 cut(s) 655
Bsp1720I GCTNAGC 1 cut(s) 320
BspCNI CTCAG 1 cut(s) 333
BspEI TCCGGA 1 cut(s) 655
BspFNI CGCG 5 cut(s) 464, 473, 533, 862, 1049
BspHI TCATGA 1 cut(s) 369
BspLI GGNNCC 8 cut(s) 190, 436, 448, 784, 785, 858, 952, 1081
BspMI ACCTGC 1 cut(s) 938
BspPI GGATC 3 cut(s) 441, 454, 971
BspQI GCTCTTC 1 cut(s) 38
BspT107I GGYRCC 1 cut(s) 1079
BsrBI CCGCTC 1 cut(s) 725
BsrI ACTGG 1 cut(s) 450
BssNI GRCGYC 1 cut(s) 1080
Bst2UI CCWGG 2 cut(s) 260, 776
Bst4CI ACNGT 1 cut(s) 630
Bst6I CTCTTC 1 cut(s) 38
BstACI GRCGYC 1 cut(s) 1080
BstC8I GCNNGC 4 cut(s) 425, 460, 735, 867
BstDEI CTNAG 1 cut(s) 320
BstDSI CCRYGG 4 cut(s) 471, 860, 960, 1047
BstEII GGTNACC 2 cut(s) 299, 563
BstF5I GGATG 3 cut(s) 664, 753, 979
BstFNI CGCG 5 cut(s) 464, 473, 533, 862, 1049
BstH2I RGCGCY 2 cut(s) 731, 1083
BstHHI GCGC 5 cut(s) 215, 347, 464, 730, 1082
BstMAI GTCTC 1 cut(s) 244
BstMCI CGRYCG 3 cut(s) 392, 468, 1072
BstNI CCWGG 2 cut(s) 260, 776
BstPI GGTNACC 2 cut(s) 299, 563
BstSLI GKGCMC 2 cut(s) 787, 935
BstUI CGCG 5 cut(s) 464, 473, 533, 862, 1049
BstV1I GCAGC 5 cut(s) 71, 197, 343, 717, 917
BstV2I GAAGAC 1 cut(s) 133
BstX2I RGATCY 3 cut(s) 276, 291, 446
BstXI CCANNNNNNTGG 1 cut(s) 961
BstYI RGATCY 3 cut(s) 276, 291, 446
BstZI CGGCCG 1 cut(s) 465
BtgI CCRYGG 4 cut(s) 471, 860, 960, 1047
BtgZI GCGATG 1 cut(s) 160
BtsCI GGATG 3 cut(s) 664, 753, 979
BtsI GCAGTG 2 cut(s) 804, 954
BtsIMutI CAGTG 3 cut(s) 457, 804, 954
BveI ACCTGC 1 cut(s) 938
Cac8I GCNNGC 4 cut(s) 425, 460, 735, 867
CciI TCATGA 1 cut(s) 369
CciNI GCGGCCGC 1 cut(s) 465
CfoI GCGC 5 cut(s) 215, 347, 464, 730, 1082
Cfr13I GGNCC 6 cut(s) 188, 397, 751, 783, 784, 950
Cfr42I CCGCGG 3 cut(s) 474, 863, 1050
Cfr9I CCCGGG 1 cut(s) 818
CseI GACGC 1 cut(s) 899
CviAII CATG 2 cut(s) 370, 758
DdeI CTNAG 1 cut(s) 320
DinI GGCGCC 1 cut(s) 1081
EaeI YGGCCR 1 cut(s) 465
EagI CGGCCG 1 cut(s) 465
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
Ecl136II GAGCTC 1 cut(s) 869
EclXI CGGCCG 1 cut(s) 465
Eco147I AGGCCT 1 cut(s) 158
Eco24I GRGCYC 6 cut(s) 132, 437, 444, 787, 825, 871
Eco47I GGWCC 1 cut(s) 950
Eco52I CGGCCG 1 cut(s) 465
Eco53kI GAGCTC 1 cut(s) 869
Eco88I CYCGRG 2 cut(s) 818, 980
Eco91I GGTNACC 2 cut(s) 299, 563
EcoICRI GAGCTC 1 cut(s) 869
EcoO109I RGGNCCY 3 cut(s) 783, 784, 950
EcoO65I GGTNACC 2 cut(s) 299, 563
EcoRI GAATTC 1 cut(s) 766
EcoRII CCWGG 2 cut(s) 258, 774
EcoT38I GRGCYC 6 cut(s) 132, 437, 444, 787, 825, 871
EgeI GGCGCC 1 cut(s) 1081
EheI GGCGCC 1 cut(s) 1081
Esp3I CGTCTC 1 cut(s) 244
FaeI CATG 2 cut(s) 373, 761
FaiI YATR 7 cut(s) 371, 515, 581, 596, 624, 759, 887
FaqI GGGAC 2 cut(s) 824, 936
FatI CATG 2 cut(s) 369, 757
FauI CCCGC 5 cut(s) 175, 494, 526, 593, 935
FblI GTMKAC 2 cut(s) 219, 1063
FokI GGATG 3 cut(s) 671, 760, 986
FriOI GRGCYC 6 cut(s) 132, 437, 444, 787, 825, 871
GlaI GCGC 5 cut(s) 214, 346, 463, 729, 1081
GsuI CTGGAG 1 cut(s) 88
HaeII RGCGCY 2 cut(s) 731, 1083
HgaI GACGC 1 cut(s) 899
HhaI GCGC 5 cut(s) 215, 347, 464, 730, 1082
Hin1I GRCGYC 1 cut(s) 1080
Hin1II CATG 2 cut(s) 373, 761
Hin6I GCGC 5 cut(s) 213, 345, 462, 728, 1080
HinP1I GCGC 5 cut(s) 213, 345, 462, 728, 1080
HincII GTYRAC 2 cut(s) 220, 487
HindII GTYRAC 2 cut(s) 220, 487
HinfI GANTC 6 cut(s) 351, 384, 613, 640, 877, 1065
HphI GGTGA 5 cut(s) 42, 109, 238, 311, 538
Hpy166II GTNNAC 4 cut(s) 220, 487, 933, 1064
Hpy188I TCNGA 9 cut(s) 289, 383, 389, 446, 547, 618, 708, 1001, 1104
Hpy188III TCNNGA 7 cut(s) 105, 337, 370, 413, 656, 763, 980
Hpy8I GTNNAC 4 cut(s) 220, 487, 933, 1064
Hpy99I CGWCG 3 cut(s) 221, 224, 712
HpyAV CCTTC 3 cut(s) 169, 547, 1036
HpyCH4III ACNGT 1 cut(s) 630
HpyCH4V TGCA 3 cut(s) 87, 805, 933
HpyF3I CTNAG 1 cut(s) 320
Hsp92I GRCGYC 1 cut(s) 1080
Hsp92II CATG 2 cut(s) 373, 761
HspAI GCGC 5 cut(s) 213, 345, 462, 728, 1080
KasI GGCGCC 1 cut(s) 1079
Kpn2I TCCGGA 1 cut(s) 655
KspI CCGCGG 3 cut(s) 474, 863, 1050
LguI GCTCTTC 1 cut(s) 38
LmnI GCTCC 6 cut(s) 440, 589, 618, 709, 856, 874
Lsp1109I GCAGC 5 cut(s) 71, 197, 343, 717, 917
LweI GCATC 1 cut(s) 366
MaeIII GTNAC 3 cut(s) 299, 563, 967
MbiI CCGCTC 1 cut(s) 725
MboII GAAGA 5 cut(s) 25, 133, 385, 724, 727
MflI RGATCY 3 cut(s) 276, 291, 446
MhlI GDGCHC 7 cut(s) 132, 437, 444, 787, 825, 871, 935
MluCI AATT 5 cut(s) 492, 506, 521, 668, 766
Mly113I GGCGCC 1 cut(s) 1080
MlyI GAGTC 2 cut(s) 393, 1059
MmeI TCCRAC 2 cut(s) 612, 731
MroI TCCGGA 1 cut(s) 655
MslI CAYNNNNRTG 3 cut(s) 374, 928, 959
MspA1I CMGCKG 6 cut(s) 84, 473, 646, 862, 874, 1049
Mva1269I GAATGC 1 cut(s) 923
MvaI CCWGG 2 cut(s) 260, 776
MvnI CGCG 5 cut(s) 464, 473, 533, 862, 1049
NarI GGCGCC 1 cut(s) 1080
NciI CCSGG 9 cut(s) 192, 270, 439, 781, 819, 820, 882, 919, 1073
NlaIII CATG 2 cut(s) 373, 761
NlaIV GGNNCC 8 cut(s) 190, 436, 448, 784, 785, 858, 952, 1081
NmeAIII GCCGAG 3 cut(s) 165, 207, 804
NmuCI GTSAC 2 cut(s) 299, 967
NotI GCGGCCGC 1 cut(s) 465
OliI CACNNNNGTG 1 cut(s) 959
PagI TCATGA 1 cut(s) 369
PceI AGGCCT 1 cut(s) 158
PciSI GCTCTTC 1 cut(s) 38
PcsI WCGNNNNNNNCGW 3 cut(s) 228, 234, 360
PctI GAATGC 1 cut(s) 923
PfeI GAWTC 4 cut(s) 351, 613, 640, 877
PflFI GACNNNGTC 1 cut(s) 236
Ple19I CGATCG 1 cut(s) 392
PleI GAGTC 2 cut(s) 392, 1059
PluTI GGCGCC 1 cut(s) 1083
PpsI GAGTC 2 cut(s) 392, 1059
PpuMI RGGWCCY 1 cut(s) 950
Psp124BI GAGCTC 1 cut(s) 871
Psp5II RGGWCCY 1 cut(s) 950
Psp6I CCWGG 2 cut(s) 258, 774
PspEI GGTNACC 2 cut(s) 299, 563
PspGI CCWGG 2 cut(s) 258, 774
PspN4I GGNNCC 8 cut(s) 190, 436, 448, 784, 785, 858, 952, 1081
PspOMI GGGCCC 1 cut(s) 783
PspPI GGNCC 6 cut(s) 188, 397, 751, 783, 784, 950
PspPPI RGGWCCY 1 cut(s) 950
PsuI RGATCY 3 cut(s) 276, 291, 446
PsyI GACNNNGTC 1 cut(s) 236
PvuI CGATCG 1 cut(s) 392
RseI CAYNNNNRTG 3 cut(s) 374, 928, 959
SacI GAGCTC 1 cut(s) 871
SacII CCGCGG 3 cut(s) 474, 863, 1050
SalI GTCGAC 1 cut(s) 218
SapI GCTCTTC 1 cut(s) 38
Sau96I GGNCC 6 cut(s) 188, 397, 751, 783, 784, 950
SchI GAGTC 2 cut(s) 393, 1059
SduI GDGCHC 7 cut(s) 132, 437, 444, 787, 825, 871, 935
SfaNI GCATC 1 cut(s) 366
SfoI GGCGCC 1 cut(s) 1081
Sfr303I CCGCGG 3 cut(s) 474, 863, 1050
SgrBI CCGCGG 3 cut(s) 474, 863, 1050
SgrDI CGTCGACG 1 cut(s) 218
SinI GGWCC 1 cut(s) 950
SmaI CCCGGG 1 cut(s) 820
SmiMI CAYNNNNRTG 3 cut(s) 374, 928, 959
SrfI GCCCGGGC 1 cut(s) 820
Sse9I AATT 5 cut(s) 492, 506, 521, 668, 766
SseBI AGGCCT 1 cut(s) 158
SspDI GGCGCC 1 cut(s) 1079
SstI GAGCTC 1 cut(s) 871
StuI AGGCCT 1 cut(s) 158
TaaI ACNGT 1 cut(s) 630
TaqI TCGA 9 cut(s) 59, 198, 219, 252, 363, 770, 839, 912, 1068
TasI AATT 5 cut(s) 492, 506, 521, 668, 766
TfiI GAWTC 4 cut(s) 351, 613, 640, 877
TscAI CASTG 3 cut(s) 457, 804, 961
TseFI GTSAC 2 cut(s) 299, 967
TseI GCWGC 5 cut(s) 84, 210, 356, 730, 905
Tsp45I GTSAC 2 cut(s) 299, 967
TspDTI ATGAA 2 cut(s) 386, 639
TspGWI ACGGA 3 cut(s) 12, 139, 986
TspMI CCCGGG 1 cut(s) 818
TspRI CASTG 3 cut(s) 457, 804, 961
Tth111I GACNNNGTC 1 cut(s) 236
VneI GTGCAC 1 cut(s) 931
VpaK11BI GGWCC 1 cut(s) 950
XapI RAATTY 2 cut(s) 492, 766
XmaI CCCGGG 1 cut(s) 818
XmiI GTMKAC 2 cut(s) 219, 1063
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.