AT2G17350

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014056
Physical Location & Seq
Reverse (-)
7545454 .. 7546374
921 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G17350.1

Sequence Viewer

Length: 354 bp
ATGTCGCTGAGAATTAAATTAGTGGTGGATAAGTTTGTGGAGGAGCTTAAGCAAGCACTTGACGCTGATATACAAGATCGGATCATGAAGGAGAGAGAGATGCAGAGTTATATAGAAGAGCGTGAGCGTGAAGTCGCTGAGCGAGAAGCTGCCTGGAAAGCTGAGCTCTCTCGCCGTGAGACGGAGATCGCTAGACAGGAAGCGAGGTTGAAGATGGAGAGAGAGAATCTGGAGAAGGAGAAGAGTGTTCTTATGGGGACTGCGTCGAATCAGGATAATCAAGATGGTGCTCTGGAAATTACTGTGAGTGGTGAGAAATATCGGTGTCTTAGATTCTCTAAGGCTAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.81

Weight (kDa)

5.76

Isoelectric Point (pI)

44.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014056)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17350
fragaria_vesca FvH4_2g16970 FvH4_2g16970
malus_domestica MD05G1141900.v1.1 MD05G1142800.v1.1 MD10G1142700.v1.1
prunus_persica Prupe.8G181600_v2.0.a1
pyrus_communis pycom10g12260
rosa_chinensis RchiOBHm_Chr6g0281161
rosa_laevigata RLG00000012989
rosa_multiflora Rmu_sc0001705.1_g000020
rosa_rugosa Rorug06G0139400
rosa_samantha Rh6AG251200 Rh6BG254400 Rh6CG253800 Rh6DG245800
rosa_wichuraiana Rw6G021810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 89
AfiI CCNNNNNNNGG 1 cut(s) 181
AflII CTTAAG 1 cut(s) 47
AgsI TTSAA 1 cut(s) 211
AjnI CCWGG 1 cut(s) 152
AluBI AGCT 4 cut(s) 46, 149, 161, 166
AluI AGCT 4 cut(s) 46, 149, 161, 166
Alw21I GWGCWC 2 cut(s) 168, 292
Alw26I GTCTC 1 cut(s) 173
AlwI GGATC 1 cut(s) 89
ApeKI GCWGC 1 cut(s) 149
AsuHPI GGTGA 1 cut(s) 323
BanII GRGCYC 1 cut(s) 168
Bbv12I GWGCWC 2 cut(s) 168, 292
BbvI GCAGC 1 cut(s) 136
BccI CCATC 2 cut(s) 208, 278
BceAI ACGGC 1 cut(s) 159
BciT130I CCWGG 1 cut(s) 154
BcoDI GTCTC 1 cut(s) 173
BfaI CTAG 1 cut(s) 192
BfrI CTTAAG 1 cut(s) 47
BisI GCNGC 1 cut(s) 150
BlpI GCTNAGC 2 cut(s) 138, 162
BlsI GCNGC 1 cut(s) 151
Bme1390I CCNGG 1 cut(s) 154
BmrFI CCNGG 1 cut(s) 154
BmsI GCATC 1 cut(s) 90
BpmI CTGGAG 1 cut(s) 251
Bpu1102I GCTNAGC 2 cut(s) 138, 162
Bsc4I CCNNNNNNNGG 1 cut(s) 181
BseBI CCWGG 1 cut(s) 154
BseLI CCNNNNNNNGG 1 cut(s) 181
BseMII CTCAG 2 cut(s) 129, 153
BseRI GAGGAG 1 cut(s) 56
BseXI GCAGC 1 cut(s) 136
BsiHKAI GWGCWC 2 cut(s) 168, 292
BslFI GGGAC 1 cut(s) 271
BslI CCNNNNNNNGG 1 cut(s) 181
BsmAI GTCTC 1 cut(s) 173
BsmBI CGTCTC 1 cut(s) 173
BsmFI GGGAC 1 cut(s) 271
Bsp1286I GDGCHC 2 cut(s) 168, 292
Bsp143I GATC 3 cut(s) 76, 81, 186
Bsp1720I GCTNAGC 2 cut(s) 138, 162
BspCNI CTCAG 2 cut(s) 130, 154
BspHI TCATGA 1 cut(s) 84
BspPI GGATC 1 cut(s) 89
BspQI GCTCTTC 1 cut(s) 111
BspTI CTTAAG 1 cut(s) 47
BssMI GATC 3 cut(s) 76, 81, 186
Bst2UI CCWGG 1 cut(s) 154
Bst4CI ACNGT 1 cut(s) 304
Bst6I CTCTTC 2 cut(s) 111, 236
BstAFI CTTAAG 1 cut(s) 47
BstC8I GCNNGC 1 cut(s) 54
BstDEI CTNAG 6 cut(s) 8, 138, 162, 329, 339, 345
BstKTI GATC 3 cut(s) 79, 84, 189
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 3 cut(s) 76, 81, 186
BstMWI GCNNNNNNNGC 2 cut(s) 62, 158
BstNI CCWGG 1 cut(s) 154
BstSCI CCNGG 1 cut(s) 152
BstV1I GCAGC 1 cut(s) 136
Cac8I GCNNGC 1 cut(s) 54
CciI TCATGA 1 cut(s) 84
CseI GACGC 2 cut(s) 71, 252
CviAII CATG 1 cut(s) 85
CviJI RGCY 5 cut(s) 46, 149, 161, 166, 344
CviKI_1 RGCY 5 cut(s) 46, 149, 161, 166, 344
DdeI CTNAG 6 cut(s) 8, 138, 162, 329, 339, 345
DpnI GATC 3 cut(s) 78, 83, 188
DpnII GATC 3 cut(s) 76, 81, 186
Eam1104I CTCTTC 2 cut(s) 111, 236
EarI CTCTTC 2 cut(s) 111, 236
Ecl136II GAGCTC 1 cut(s) 166
Eco24I GRGCYC 1 cut(s) 168
Eco53kI GAGCTC 1 cut(s) 166
EcoICRI GAGCTC 1 cut(s) 166
EcoRII CCWGG 1 cut(s) 152
EcoT38I GRGCYC 1 cut(s) 168
Esp3I CGTCTC 1 cut(s) 173
FaeI CATG 1 cut(s) 88
FaiI YATR 5 cut(s) 71, 86, 111, 113, 254
FaqI GGGAC 1 cut(s) 271
FatI CATG 1 cut(s) 84
Fnu4HI GCNGC 1 cut(s) 150
FriOI GRGCYC 1 cut(s) 168
Fsp4HI GCNGC 1 cut(s) 150
FspBI CTAG 1 cut(s) 192
GluI GCNGC 1 cut(s) 150
GsuI CTGGAG 1 cut(s) 251
HgaI GACGC 2 cut(s) 71, 252
Hin1II CATG 1 cut(s) 88
HinfI GANTC 3 cut(s) 226, 268, 333
HphI GGTGA 1 cut(s) 323
Hpy188I TCNGA 1 cut(s) 81
Hpy188III TCNNGA 5 cut(s) 85, 230, 272, 281, 293
Hpy99I CGWCG 1 cut(s) 268
HpyAV CCTTC 2 cut(s) 82, 229
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4V TGCA 1 cut(s) 103
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 158
HpyF3I CTNAG 6 cut(s) 8, 138, 162, 329, 339, 345
Hsp92II CATG 1 cut(s) 88
Kzo9I GATC 3 cut(s) 76, 81, 186
LguI GCTCTTC 1 cut(s) 111
LmnI GCTCC 1 cut(s) 43
LpnPI CCDG 6 cut(s) 139, 166, 182, 215, 257, 278
Lsp1109I GCAGC 1 cut(s) 136
LweI GCATC 1 cut(s) 90
MaeI CTAG 1 cut(s) 192
MalI GATC 3 cut(s) 78, 83, 188
MboI GATC 3 cut(s) 76, 81, 186
MboII GAAGA 3 cut(s) 128, 223, 253
MhlI GDGCHC 2 cut(s) 168, 292
MluCI AATT 3 cut(s) 12, 17, 297
MnlI CCTC 2 cut(s) 34, 198
MseI TTAA 2 cut(s) 15, 48
MspCI CTTAAG 1 cut(s) 47
MspR9I CCNGG 1 cut(s) 154
MvaI CCWGG 1 cut(s) 154
MwoI GCNNNNNNNGC 2 cut(s) 62, 158
NdeII GATC 3 cut(s) 76, 81, 186
NlaIII CATG 1 cut(s) 88
PagI TCATGA 1 cut(s) 84
PciSI GCTCTTC 1 cut(s) 111
PfeI GAWTC 3 cut(s) 226, 268, 333
PflFI GACNNNGTC 1 cut(s) 262
PkrI GCNGC 1 cut(s) 151
Psp124BI GAGCTC 1 cut(s) 168
Psp6I CCWGG 1 cut(s) 152
PspGI CCWGG 1 cut(s) 152
PsyI GACNNNGTC 1 cut(s) 262
SacI GAGCTC 1 cut(s) 168
SapI GCTCTTC 1 cut(s) 111
SaqAI TTAA 2 cut(s) 15, 48
SatI GCNGC 1 cut(s) 150
Sau3AI GATC 3 cut(s) 76, 81, 186
ScrFI CCNGG 1 cut(s) 154
SduI GDGCHC 2 cut(s) 168, 292
SetI ASST 5 cut(s) 48, 151, 163, 168, 209
SfaNI GCATC 1 cut(s) 90
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse9I AATT 3 cut(s) 12, 17, 297
SspMI CTAG 1 cut(s) 192
SstI GAGCTC 1 cut(s) 168
StyD4I CCNGG 1 cut(s) 152
TaaI ACNGT 1 cut(s) 304
TaqI TCGA 1 cut(s) 266
TasI AATT 3 cut(s) 12, 17, 297
TfiI GAWTC 3 cut(s) 226, 268, 333
Tru1I TTAA 2 cut(s) 15, 48
Tru9I TTAA 2 cut(s) 15, 48
TseI GCWGC 1 cut(s) 149
TspDTI ATGAA 1 cut(s) 101
TspGWI ACGGA 1 cut(s) 197
Tth111I GACNNNGTC 1 cut(s) 262
Vha464I CTTAAG 1 cut(s) 47
XspI CTAG 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.