MD05G1141900.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0014056
Physical Location & Seq
Reverse (-)
27233678 .. 27235517
1840 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1141900.v1.1.491

Sequence Viewer

Length: 354 bp
ATGCCTCTGAGAATCAAACTGGTGGTGGACAAGTTCGTCCAGGAGCTCAAGGAAGCTCTGGATGCCGATATCCAAGATAGAATCATGAAGGAGCGAGAGATGCAGAGCTACATTGAAGAGCGGGAACGCGAGGTCGCCGAGCGCGAAGCTGCTTGGAAGGCGGAGCTCTCTCGCCGCGAGGCAGAGATAGCCAGACAAGAAGCAAGGCTAAAAATAGAGAAAGAAAACCTCGAAAAGGAGAAAAGTGTTCTAATGGGAACTGCATCGAATCAAGATAACCAAGACGGGGCACTTGAAATCACTGTCAGTGGTGAAAAGTATCGGTGTCTCAGGTTTGCAAAGGCAAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.73

Weight (kDa)

5.76

Isoelectric Point (pI)

39.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014056)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17350
fragaria_vesca FvH4_2g16970 FvH4_2g16970
malus_domestica MD05G1141900.v1.1 MD05G1142800.v1.1 MD10G1142700.v1.1
prunus_persica Prupe.8G181600_v2.0.a1
pyrus_communis pycom10g12260
rosa_chinensis RchiOBHm_Chr6g0281161
rosa_laevigata RLG00000012989
rosa_multiflora Rmu_sc0001705.1_g000020
rosa_rugosa Rorug06G0139400
rosa_samantha Rh6AG251200 Rh6BG254400 Rh6CG253800 Rh6DG245800
rosa_wichuraiana Rw6G021810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 35
AccBSI CCGCTC 1 cut(s) 121
AccII CGCG 3 cut(s) 129, 144, 177
AciI CCGC 3 cut(s) 121, 161, 175
AfiI CCNNNNNNNGG 2 cut(s) 235, 286
AgsI TTSAA 2 cut(s) 116, 296
AjnI CCWGG 1 cut(s) 39
AluBI AGCT 5 cut(s) 46, 56, 108, 149, 166
AluI AGCT 5 cut(s) 46, 56, 108, 149, 166
Alw21I GWGCWC 2 cut(s) 48, 168
Alw26I GTCTC 1 cut(s) 332
ApeKI GCWGC 1 cut(s) 149
AspLEI GCGC 1 cut(s) 144
AsuHPI GGTGA 1 cut(s) 323
BaeGI GKGCMC 1 cut(s) 292
BanII GRGCYC 2 cut(s) 48, 168
Bbv12I GWGCWC 2 cut(s) 48, 168
BbvI GCAGC 1 cut(s) 136
BciT130I CCWGG 1 cut(s) 41
BcoDI GTCTC 1 cut(s) 332
BisI GCNGC 2 cut(s) 150, 175
BlsI GCNGC 2 cut(s) 151, 176
Bme1390I CCNGG 1 cut(s) 41
BmrFI CCNGG 1 cut(s) 41
BmsI GCATC 3 cut(s) 52, 90, 272
BpuEI CTTGAG 1 cut(s) 32
Bsc4I CCNNNNNNNGG 2 cut(s) 235, 286
Bse1I ACTGG 1 cut(s) 24
BseBI CCWGG 1 cut(s) 41
BseGI GGATG 1 cut(s) 67
BseLI CCNNNNNNNGG 2 cut(s) 235, 286
BseMII CTCAG 1 cut(s) 343
BseNI ACTGG 1 cut(s) 24
BseSI GKGCMC 1 cut(s) 292
BseXI GCAGC 1 cut(s) 136
Bsh1236I CGCG 3 cut(s) 129, 144, 177
BsiHKAI GWGCWC 2 cut(s) 48, 168
BslI CCNNNNNNNGG 2 cut(s) 235, 286
BsmAI GTCTC 1 cut(s) 332
Bsp1286I GDGCHC 3 cut(s) 48, 168, 292
BspACI CCGC 3 cut(s) 121, 161, 175
BspCNI CTCAG 1 cut(s) 342
BspFNI CGCG 3 cut(s) 129, 144, 177
BspHI TCATGA 1 cut(s) 84
BspQI GCTCTTC 1 cut(s) 111
BsrBI CCGCTC 1 cut(s) 121
BsrI ACTGG 1 cut(s) 24
Bst2UI CCWGG 1 cut(s) 41
Bst4CI ACNGT 1 cut(s) 304
Bst6I CTCTTC 1 cut(s) 111
BstDEI CTNAG 2 cut(s) 8, 329
BstENI CCTNNNNNAGG 1 cut(s) 233
BstF5I GGATG 1 cut(s) 67
BstFNI CGCG 3 cut(s) 129, 144, 177
BstHHI GCGC 1 cut(s) 144
BstMAI GTCTC 1 cut(s) 332
BstMWI GCNNNNNNNGC 4 cut(s) 62, 100, 158, 188
BstNI CCWGG 1 cut(s) 41
BstSCI CCNGG 1 cut(s) 39
BstSLI GKGCMC 1 cut(s) 292
BstUI CGCG 3 cut(s) 129, 144, 177
BstV1I GCAGC 1 cut(s) 136
BtsCI GGATG 1 cut(s) 67
BtsIMutI CAGTG 2 cut(s) 300, 313
CciI TCATGA 1 cut(s) 84
CfoI GCGC 1 cut(s) 144
CviAII CATG 1 cut(s) 85
CviJI RGCY 7 cut(s) 46, 56, 108, 149, 166, 191, 208
CviKI_1 RGCY 7 cut(s) 46, 56, 108, 149, 166, 191, 208
DdeI CTNAG 2 cut(s) 8, 329
DrdI GACNNNNNNGTC 1 cut(s) 35
DseDI GACNNNNNNGTC 1 cut(s) 35
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
EciI GGCGGA 1 cut(s) 176
Ecl136II GAGCTC 2 cut(s) 46, 166
Eco24I GRGCYC 2 cut(s) 48, 168
Eco32I GATATC 1 cut(s) 70
Eco53kI GAGCTC 2 cut(s) 46, 166
EcoICRI GAGCTC 2 cut(s) 46, 166
EcoNI CCTNNNNNAGG 1 cut(s) 233
EcoRII CCWGG 1 cut(s) 39
EcoRV GATATC 1 cut(s) 70
EcoT38I GRGCYC 2 cut(s) 48, 168
FaeI CATG 1 cut(s) 88
FaiI YATR 1 cut(s) 86
FatI CATG 1 cut(s) 84
FauI CCCGC 1 cut(s) 114
Fnu4HI GCNGC 2 cut(s) 150, 175
FokI GGATG 1 cut(s) 74
FriOI GRGCYC 2 cut(s) 48, 168
Fsp4HI GCNGC 2 cut(s) 150, 175
GlaI GCGC 1 cut(s) 143
GluI GCNGC 2 cut(s) 150, 175
HhaI GCGC 1 cut(s) 144
Hin1II CATG 1 cut(s) 88
Hin6I GCGC 1 cut(s) 142
HinP1I GCGC 1 cut(s) 142
HinfI GANTC 3 cut(s) 12, 81, 268
HphI GGTGA 1 cut(s) 323
Hpy166II GTNNAC 1 cut(s) 28
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 3 cut(s) 59, 85, 272
Hpy8I GTNNAC 1 cut(s) 28
HpyAV CCTTC 2 cut(s) 82, 151
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4V TGCA 3 cut(s) 103, 263, 338
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 100, 158, 188
HpyF3I CTNAG 2 cut(s) 8, 329
Hsp92II CATG 1 cut(s) 88
HspAI GCGC 1 cut(s) 142
LguI GCTCTTC 1 cut(s) 111
LmnI GCTCC 3 cut(s) 43, 91, 163
LpnPI CCDG 6 cut(s) 5, 26, 44, 53, 205, 316
Lsp1109I GCAGC 1 cut(s) 136
LweI GCATC 3 cut(s) 52, 90, 272
MbiI CCGCTC 1 cut(s) 121
MboII GAAGA 1 cut(s) 128
MhlI GDGCHC 3 cut(s) 48, 168, 292
MnlI CCTC 4 cut(s) 15, 124, 172, 239
MspR9I CCNGG 1 cut(s) 41
MvaI CCWGG 1 cut(s) 41
MvnI CGCG 3 cut(s) 129, 144, 177
MwoI GCNNNNNNNGC 4 cut(s) 62, 100, 158, 188
NlaIII CATG 1 cut(s) 88
NmeAIII GCCGAG 1 cut(s) 163
PagI TCATGA 1 cut(s) 84
PciSI GCTCTTC 1 cut(s) 111
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PfeI GAWTC 3 cut(s) 12, 81, 268
PfoI TCCNGGA 1 cut(s) 39
PkrI GCNGC 2 cut(s) 151, 176
Psp124BI GAGCTC 2 cut(s) 48, 168
Psp6I CCWGG 1 cut(s) 39
PspGI CCWGG 1 cut(s) 39
SacI GAGCTC 2 cut(s) 48, 168
SapI GCTCTTC 1 cut(s) 111
SatI GCNGC 2 cut(s) 150, 175
ScrFI CCNGG 1 cut(s) 41
SduI GDGCHC 3 cut(s) 48, 168, 292
SetI ASST 8 cut(s) 48, 58, 110, 135, 151, 168, 231, 335
SfaNI GCATC 3 cut(s) 52, 90, 272
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
SsiI CCGC 3 cut(s) 121, 161, 175
SstI GAGCTC 2 cut(s) 48, 168
StyD4I CCNGG 1 cut(s) 39
TaaI ACNGT 1 cut(s) 304
TaqI TCGA 2 cut(s) 231, 266
TauI GCSGC 1 cut(s) 177
TfiI GAWTC 3 cut(s) 12, 81, 268
TscAI CASTG 2 cut(s) 307, 313
TseI GCWGC 1 cut(s) 149
TspDTI ATGAA 1 cut(s) 101
TspRI CASTG 2 cut(s) 307, 313
XagI CCTNNNNNAGG 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.