MD05G1142800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0014056
Physical Location & Seq
Reverse (-)
27368777 .. 27369557
781 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1142800.v1.1.491

Sequence Viewer

Length: 252 bp
ATGTCTCTGAGAATCAAACTGGTGGTGGACAAGTTCGTCCAGGAGCTCAAGGAAGCTCTGGATGCCGATATCCAAGATAGAATCATGAAGGAGCGAGAGATGCAGAGCTACATCGAAGAGCGGGAACGCGAGGTCGCCGAGCGCGAAGCTGCTTGGAAGGCGGAACTCTCTCGCCGCGAGGTCCTATTCGTACTATATTCTTGTTCTCGTCAATCCAATTTTTTCATTCAGTCCTTTTGTCGAACACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

10.02

Weight (kDa)

5.54

Isoelectric Point (pI)

54.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014056)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17350
fragaria_vesca FvH4_2g16970 FvH4_2g16970
malus_domestica MD05G1141900.v1.1 MD05G1142800.v1.1 MD10G1142700.v1.1
prunus_persica Prupe.8G181600_v2.0.a1
pyrus_communis pycom10g12260
rosa_chinensis RchiOBHm_Chr6g0281161
rosa_laevigata RLG00000012989
rosa_multiflora Rmu_sc0001705.1_g000020
rosa_rugosa Rorug06G0139400
rosa_samantha Rh6AG251200 Rh6BG254400 Rh6CG253800 Rh6DG245800
rosa_wichuraiana Rw6G021810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 35
AccBSI CCGCTC 1 cut(s) 121
AccII CGCG 3 cut(s) 129, 144, 177
AciI CCGC 3 cut(s) 121, 161, 175
AfaI GTAC 1 cut(s) 192
AjnI CCWGG 1 cut(s) 39
AluBI AGCT 4 cut(s) 46, 56, 108, 149
AluI AGCT 4 cut(s) 46, 56, 108, 149
Alw21I GWGCWC 1 cut(s) 48
Alw26I GTCTC 1 cut(s) 9
ApeKI GCWGC 1 cut(s) 149
AspLEI GCGC 1 cut(s) 144
AspS9I GGNCC 1 cut(s) 181
AvaII GGWCC 1 cut(s) 181
BanII GRGCYC 1 cut(s) 48
Bbv12I GWGCWC 1 cut(s) 48
BbvI GCAGC 1 cut(s) 136
BciT130I CCWGG 1 cut(s) 41
BcoDI GTCTC 1 cut(s) 9
BisI GCNGC 2 cut(s) 150, 175
BlsI GCNGC 2 cut(s) 151, 176
Bme1390I CCNGG 1 cut(s) 41
Bme18I GGWCC 1 cut(s) 181
BmgT120I GGNCC 1 cut(s) 181
BmrFI CCNGG 1 cut(s) 41
BmsI GCATC 2 cut(s) 52, 90
BpuEI CTTGAG 1 cut(s) 32
Bse1I ACTGG 1 cut(s) 24
BseBI CCWGG 1 cut(s) 41
BseGI GGATG 1 cut(s) 67
BseNI ACTGG 1 cut(s) 24
BseXI GCAGC 1 cut(s) 136
Bsh1236I CGCG 3 cut(s) 129, 144, 177
BsiHKAI GWGCWC 1 cut(s) 48
BsmAI GTCTC 1 cut(s) 9
Bsp1286I GDGCHC 1 cut(s) 48
BspACI CCGC 3 cut(s) 121, 161, 175
BspFNI CGCG 3 cut(s) 129, 144, 177
BspHI TCATGA 1 cut(s) 84
BspQI GCTCTTC 1 cut(s) 111
BsrBI CCGCTC 1 cut(s) 121
BsrI ACTGG 1 cut(s) 24
Bst2UI CCWGG 1 cut(s) 41
Bst6I CTCTTC 1 cut(s) 111
BstDEI CTNAG 1 cut(s) 8
BstF5I GGATG 1 cut(s) 67
BstFNI CGCG 3 cut(s) 129, 144, 177
BstHHI GCGC 1 cut(s) 144
BstMAI GTCTC 1 cut(s) 9
BstMWI GCNNNNNNNGC 3 cut(s) 62, 100, 158
BstNI CCWGG 1 cut(s) 41
BstSCI CCNGG 1 cut(s) 39
BstUI CGCG 3 cut(s) 129, 144, 177
BstV1I GCAGC 1 cut(s) 136
BtsCI GGATG 1 cut(s) 67
CciI TCATGA 1 cut(s) 84
CfoI GCGC 1 cut(s) 144
Cfr13I GGNCC 1 cut(s) 181
Csp6I GTAC 1 cut(s) 191
CviAII CATG 1 cut(s) 85
CviJI RGCY 4 cut(s) 46, 56, 108, 149
CviKI_1 RGCY 4 cut(s) 46, 56, 108, 149
CviQI GTAC 1 cut(s) 191
DdeI CTNAG 1 cut(s) 8
DrdI GACNNNNNNGTC 1 cut(s) 35
DseDI GACNNNNNNGTC 1 cut(s) 35
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
EciI GGCGGA 1 cut(s) 176
Ecl136II GAGCTC 1 cut(s) 46
Eco24I GRGCYC 1 cut(s) 48
Eco32I GATATC 1 cut(s) 70
Eco47I GGWCC 1 cut(s) 181
Eco53kI GAGCTC 1 cut(s) 46
EcoICRI GAGCTC 1 cut(s) 46
EcoO109I RGGNCCY 1 cut(s) 181
EcoRII CCWGG 1 cut(s) 39
EcoRV GATATC 1 cut(s) 70
EcoT38I GRGCYC 1 cut(s) 48
FaeI CATG 1 cut(s) 88
FaiI YATR 2 cut(s) 86, 196
FatI CATG 1 cut(s) 84
FauI CCCGC 1 cut(s) 114
Fnu4HI GCNGC 2 cut(s) 150, 175
FokI GGATG 1 cut(s) 74
FriOI GRGCYC 1 cut(s) 48
Fsp4HI GCNGC 2 cut(s) 150, 175
GlaI GCGC 1 cut(s) 143
GluI GCNGC 2 cut(s) 150, 175
HhaI GCGC 1 cut(s) 144
Hin1II CATG 1 cut(s) 88
Hin6I GCGC 1 cut(s) 142
HinP1I GCGC 1 cut(s) 142
HinfI GANTC 2 cut(s) 12, 81
Hpy166II GTNNAC 1 cut(s) 28
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 2 cut(s) 59, 85
Hpy8I GTNNAC 1 cut(s) 28
HpyAV CCTTC 2 cut(s) 82, 151
HpyCH4V TGCA 1 cut(s) 103
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 100, 158
HpyF3I CTNAG 1 cut(s) 8
Hsp92II CATG 1 cut(s) 88
HspAI GCGC 1 cut(s) 142
LguI GCTCTTC 1 cut(s) 111
LmnI GCTCC 2 cut(s) 43, 91
LpnPI CCDG 4 cut(s) 5, 26, 44, 53
Lsp1109I GCAGC 1 cut(s) 136
LweI GCATC 2 cut(s) 52, 90
MbiI CCGCTC 1 cut(s) 121
MboII GAAGA 1 cut(s) 128
MhlI GDGCHC 1 cut(s) 48
MluCI AATT 1 cut(s) 217
MnlI CCTC 2 cut(s) 124, 172
MspR9I CCNGG 1 cut(s) 41
MvaI CCWGG 1 cut(s) 41
MvnI CGCG 3 cut(s) 129, 144, 177
MwoI GCNNNNNNNGC 3 cut(s) 62, 100, 158
NlaIII CATG 1 cut(s) 88
NmeAIII GCCGAG 1 cut(s) 163
PagI TCATGA 1 cut(s) 84
PciSI GCTCTTC 1 cut(s) 111
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PfeI GAWTC 2 cut(s) 12, 81
PfoI TCCNGGA 1 cut(s) 39
PkrI GCNGC 2 cut(s) 151, 176
PpuMI RGGWCCY 1 cut(s) 181
Psp124BI GAGCTC 1 cut(s) 48
Psp5II RGGWCCY 1 cut(s) 181
Psp6I CCWGG 1 cut(s) 39
PspGI CCWGG 1 cut(s) 39
PspPI GGNCC 1 cut(s) 181
PspPPI RGGWCCY 1 cut(s) 181
RsaI GTAC 1 cut(s) 192
RsaNI GTAC 1 cut(s) 191
SacI GAGCTC 1 cut(s) 48
SapI GCTCTTC 1 cut(s) 111
SatI GCNGC 2 cut(s) 150, 175
Sau96I GGNCC 1 cut(s) 181
ScrFI CCNGG 1 cut(s) 41
SduI GDGCHC 1 cut(s) 48
SetI ASST 7 cut(s) 48, 58, 110, 135, 151, 183, 250
SfaNI GCATC 2 cut(s) 52, 90
SinI GGWCC 1 cut(s) 181
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse9I AATT 1 cut(s) 217
SsiI CCGC 3 cut(s) 121, 161, 175
SstI GAGCTC 1 cut(s) 48
StyD4I CCNGG 1 cut(s) 39
TaqI TCGA 2 cut(s) 114, 241
TasI AATT 1 cut(s) 217
TauI GCSGC 1 cut(s) 177
TfiI GAWTC 2 cut(s) 12, 81
TseI GCWGC 1 cut(s) 149
TspDTI ATGAA 2 cut(s) 101, 214
VpaK11BI GGWCC 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.