Prupe.8G181600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0014056
Physical Location & Seq
Reverse (-)
18161460 .. 18162980
1521 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G181600.1

Sequence Viewer

Length: 354 bp
ATGTCTCTGAGAATCAAAATTGTGGTGGACAAGTTCGTCCAGGAGCTCAAAGAAGCTTTGGATGCCGATATCCAAGACAGAATCATGAAGGAGAGAGAGATGCAGAGCTACATCGAAGAGCGCGAACGCGAAGTCGCCGAGCGCGAAGCTGCTTGGAAAGCTGAGCTCTCTCGCCGCGAGGCAGAGATTGCCAGGCAAGAAGCAAGGCTGAAAATAGAGAAGGAAAACCTTGAGAAAGAGAAAAGCGTTCTAATGGGAACTGCTTCGAATCAAGATAACCAAGATGGAGCTCTTGAAATCACCGTAAGCGGTGAAAAATACCGGTGTCTTAGGTTTGCGAAGGCAAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.72

Weight (kDa)

5.76

Isoelectric Point (pI)

39.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014056)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17350
fragaria_vesca FvH4_2g16970 FvH4_2g16970
malus_domestica MD05G1141900.v1.1 MD05G1142800.v1.1 MD10G1142700.v1.1
prunus_persica Prupe.8G181600_v2.0.a1
pyrus_communis pycom10g12260
rosa_chinensis RchiOBHm_Chr6g0281161
rosa_laevigata RLG00000012989
rosa_multiflora Rmu_sc0001705.1_g000020
rosa_rugosa Rorug06G0139400
rosa_samantha Rh6AG251200 Rh6BG254400 Rh6CG253800 Rh6DG245800
rosa_wichuraiana Rw6G021810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 35
AccII CGCG 4 cut(s) 123, 129, 144, 177
AciI CCGC 2 cut(s) 175, 309
AgeI ACCGGT 1 cut(s) 321
AgsI TTSAA 1 cut(s) 296
AjnI CCWGG 2 cut(s) 39, 191
AluBI AGCT 7 cut(s) 46, 56, 108, 149, 161, 166, 290
AluI AGCT 7 cut(s) 46, 56, 108, 149, 161, 166, 290
Alw21I GWGCWC 3 cut(s) 48, 168, 292
Alw26I GTCTC 1 cut(s) 9
ApeKI GCWGC 1 cut(s) 149
ArsI GACNNNNNNTTYG 2 cut(s) 117, 149
AsiGI ACCGGT 1 cut(s) 321
Asp700I GAANNNNTTC 1 cut(s) 262
AspLEI GCGC 2 cut(s) 123, 144
AsuHPI GGTGA 2 cut(s) 292, 323
AsuII TTCGAA 1 cut(s) 266
BanII GRGCYC 3 cut(s) 48, 168, 292
Bbv12I GWGCWC 3 cut(s) 48, 168, 292
BbvI GCAGC 1 cut(s) 136
BccI CCATC 1 cut(s) 278
BciT130I CCWGG 2 cut(s) 41, 193
BcoDI GTCTC 1 cut(s) 9
BisI GCNGC 2 cut(s) 150, 175
BlpI GCTNAGC 1 cut(s) 162
BlsI GCNGC 2 cut(s) 151, 176
Bme1390I CCNGG 2 cut(s) 41, 193
BmrFI CCNGG 2 cut(s) 41, 193
BmsI GCATC 2 cut(s) 52, 90
Bpu1102I GCTNAGC 1 cut(s) 162
Bpu14I TTCGAA 1 cut(s) 266
BpuEI CTTGAG 1 cut(s) 251
BsaWI WCCGGW 1 cut(s) 321
Bse118I RCCGGY 1 cut(s) 321
BseBI CCWGG 2 cut(s) 41, 193
BseGI GGATG 1 cut(s) 67
BseMII CTCAG 1 cut(s) 153
BseXI GCAGC 1 cut(s) 136
Bsh1236I CGCG 4 cut(s) 123, 129, 144, 177
BshTI ACCGGT 1 cut(s) 321
BsiHKAI GWGCWC 3 cut(s) 48, 168, 292
BsiSI CCGG 1 cut(s) 322
BsmAI GTCTC 1 cut(s) 9
Bsp119I TTCGAA 1 cut(s) 266
Bsp1286I GDGCHC 3 cut(s) 48, 168, 292
Bsp1720I GCTNAGC 1 cut(s) 162
BspACI CCGC 2 cut(s) 175, 309
BspCNI CTCAG 1 cut(s) 154
BspFNI CGCG 4 cut(s) 123, 129, 144, 177
BspHI TCATGA 1 cut(s) 84
BspQI GCTCTTC 1 cut(s) 111
BspT104I TTCGAA 1 cut(s) 266
BsrFI RCCGGY 1 cut(s) 321
BssAI RCCGGY 1 cut(s) 321
Bst2UI CCWGG 2 cut(s) 41, 193
Bst4CI ACNGT 1 cut(s) 304
Bst6I CTCTTC 1 cut(s) 111
BstAPI GCANNNNNTGC 1 cut(s) 188
BstBI TTCGAA 1 cut(s) 266
BstDEI CTNAG 3 cut(s) 8, 162, 329
BstF5I GGATG 1 cut(s) 67
BstFNI CGCG 4 cut(s) 123, 129, 144, 177
BstHHI GCGC 2 cut(s) 123, 144
BstMAI GTCTC 1 cut(s) 9
BstMWI GCNNNNNNNGC 3 cut(s) 62, 158, 188
BstNI CCWGG 2 cut(s) 41, 193
BstSCI CCNGG 2 cut(s) 39, 191
BstUI CGCG 4 cut(s) 123, 129, 144, 177
BstV1I GCAGC 1 cut(s) 136
BtsCI GGATG 1 cut(s) 67
CciI TCATGA 1 cut(s) 84
CfoI GCGC 2 cut(s) 123, 144
Cfr10I RCCGGY 1 cut(s) 321
CspAI ACCGGT 1 cut(s) 321
CviAII CATG 1 cut(s) 85
CviJI RGCY 8 cut(s) 46, 56, 108, 149, 161, 166, 208, 290
CviKI_1 RGCY 8 cut(s) 46, 56, 108, 149, 161, 166, 208, 290
DdeI CTNAG 3 cut(s) 8, 162, 329
DrdI GACNNNNNNGTC 1 cut(s) 35
DseDI GACNNNNNNGTC 1 cut(s) 35
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Ecl136II GAGCTC 3 cut(s) 46, 166, 290
Eco24I GRGCYC 3 cut(s) 48, 168, 292
Eco32I GATATC 1 cut(s) 70
Eco53kI GAGCTC 3 cut(s) 46, 166, 290
EcoICRI GAGCTC 3 cut(s) 46, 166, 290
EcoRII CCWGG 2 cut(s) 39, 191
EcoRV GATATC 1 cut(s) 70
EcoT38I GRGCYC 3 cut(s) 48, 168, 292
FaeI CATG 1 cut(s) 88
FaiI YATR 1 cut(s) 86
FatI CATG 1 cut(s) 84
Fnu4HI GCNGC 2 cut(s) 150, 175
FokI GGATG 1 cut(s) 74
FriOI GRGCYC 3 cut(s) 48, 168, 292
Fsp4HI GCNGC 2 cut(s) 150, 175
GlaI GCGC 2 cut(s) 122, 143
GluI GCNGC 2 cut(s) 150, 175
HapII CCGG 1 cut(s) 322
HhaI GCGC 2 cut(s) 123, 144
Hin1II CATG 1 cut(s) 88
Hin6I GCGC 2 cut(s) 121, 142
HinP1I GCGC 2 cut(s) 121, 142
HindIII AAGCTT 1 cut(s) 54
HinfI GANTC 3 cut(s) 12, 81, 268
HpaII CCGG 1 cut(s) 322
HphI GGTGA 2 cut(s) 292, 323
Hpy166II GTNNAC 1 cut(s) 28
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 3 cut(s) 85, 272, 293
Hpy8I GTNNAC 1 cut(s) 28
HpyAV CCTTC 3 cut(s) 82, 214, 334
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4V TGCA 1 cut(s) 103
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 158, 188
HpyF3I CTNAG 3 cut(s) 8, 162, 329
Hsp92II CATG 1 cut(s) 88
HspAI GCGC 2 cut(s) 121, 142
LguI GCTCTTC 1 cut(s) 111
LmnI GCTCC 2 cut(s) 43, 287
LpnPI CCDG 5 cut(s) 26, 53, 178, 205, 335
Lsp1109I GCAGC 1 cut(s) 136
LweI GCATC 2 cut(s) 52, 90
MboII GAAGA 1 cut(s) 128
MhlI GDGCHC 3 cut(s) 48, 168, 292
MluCI AATT 1 cut(s) 18
MnlI CCTC 1 cut(s) 172
MroXI GAANNNNTTC 1 cut(s) 262
MspI CCGG 1 cut(s) 322
MspR9I CCNGG 2 cut(s) 41, 193
MvaI CCWGG 2 cut(s) 41, 193
MvnI CGCG 4 cut(s) 123, 129, 144, 177
MwoI GCNNNNNNNGC 3 cut(s) 62, 158, 188
NlaIII CATG 1 cut(s) 88
NmeAIII GCCGAG 1 cut(s) 163
NspV TTCGAA 1 cut(s) 266
PagI TCATGA 1 cut(s) 84
PciSI GCTCTTC 1 cut(s) 111
PcsI WCGNNNNNNNCGW 2 cut(s) 120, 141
PdmI GAANNNNTTC 1 cut(s) 262
PfeI GAWTC 3 cut(s) 12, 81, 268
PfoI TCCNGGA 1 cut(s) 39
PinAI ACCGGT 1 cut(s) 321
PkrI GCNGC 2 cut(s) 151, 176
Psp124BI GAGCTC 3 cut(s) 48, 168, 292
Psp6I CCWGG 2 cut(s) 39, 191
PspGI CCWGG 2 cut(s) 39, 191
SacI GAGCTC 3 cut(s) 48, 168, 292
SapI GCTCTTC 1 cut(s) 111
SatI GCNGC 2 cut(s) 150, 175
ScrFI CCNGG 2 cut(s) 41, 193
SduI GDGCHC 3 cut(s) 48, 168, 292
SetI ASST 9 cut(s) 48, 58, 110, 151, 163, 168, 231, 292, 335
SfaNI GCATC 2 cut(s) 52, 90
SfuI TTCGAA 1 cut(s) 266
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 1 cut(s) 18
SsiI CCGC 2 cut(s) 175, 309
SstI GAGCTC 3 cut(s) 48, 168, 292
StyD4I CCNGG 2 cut(s) 39, 191
TaaI ACNGT 1 cut(s) 304
TaqI TCGA 2 cut(s) 114, 266
TasI AATT 1 cut(s) 18
TauI GCSGC 1 cut(s) 177
TfiI GAWTC 3 cut(s) 12, 81, 268
TseI GCWGC 1 cut(s) 149
TspDTI ATGAA 1 cut(s) 101
XmnI GAANNNNTTC 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.