Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001705.1

Orthogroup ID

OG0014056

Physical Location & Seq

Genomic Coordinates Reverse (-)

57622 .. 61635

Gene Structure 4014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001705.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atgtctctgagaatcaaagtcgtggtggacaagttcgtacaggagctcaaggaagctttggatgcggatattcaagacagaatcatgaaggagagggagatgcagagctacatcgaagaacgcgaacgcgaagtcgccgagcgcgaagctgcttggaaagccgagctctctcgccgtgaggcagaaattgccagacaagaagcaaggctgaaaatagagaaggaaaaccttgagaaagagaagagtgttctgatgggaactgcatcaaatcaagataaccaagatggagctcttgaaatcactgccttcacagcagcatggaaagaggcgtgccagtccaaaggtagagtccacctaataatcccaagaggaacatacatgattggccctcttaagttttcaggcccctgccaaaacgtatcggctctaaatcttcgagtaaaggcaagactatctctccatcagtttgacatttttgcagttaatatcaagccatttgctgatgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

169

Amino Acids

19.38

Weight (kDa)

6.22

Isoelectric Point (pI)

37.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17350
fragaria_vesca	FvH4_2g16970 FvH4_2g16970
malus_domestica	MD05G1141900.v1.1 MD05G1142800.v1.1 MD10G1142700.v1.1
prunus_persica	Prupe.8G181600_v2.0.a1
pyrus_communis	pycom10g12260
rosa_chinensis	RchiOBHm_Chr6g0281161
rosa_laevigata	RLG00000012989
rosa_multiflora	Rmu_sc0001705.1_g000020
rosa_rugosa	Rorug06G0139400
rosa_samantha	Rh6AG251200 Rh6BG254400 Rh6CG253800 Rh6DG245800
rosa_wichuraiana	Rw6G021810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	123, 129, 144
AciI	CCGC	1 cut(s)	65
AfaI	GTAC	1 cut(s)	39
AflII	CTTAAG	1 cut(s)	392
AgsI	TTSAA	2 cut(s)	74, 296
AluBI	AGCT	6 cut(s)	46, 56, 108, 149, 166, 290
AluI	AGCT	6 cut(s)	46, 56, 108, 149, 166, 290
Alw21I	GWGCWC	3 cut(s)	48, 168, 292
Alw26I	GTCTC	1 cut(s)	9
AoxI	GGCC	2 cut(s)	385, 403
ApeKI	GCWGC	2 cut(s)	149, 314
ArsI	GACNNNNNNTTYG	4 cut(s)	117, 149, 333, 365
AspLEI	GCGC	1 cut(s)	144
AspS9I	GGNCC	2 cut(s)	386, 404
BanII	GRGCYC	3 cut(s)	48, 168, 292
Bbv12I	GWGCWC	3 cut(s)	48, 168, 292
BbvI	GCAGC	2 cut(s)	136, 326
BccI	CCATC	3 cut(s)	247, 278, 468
BceAI	ACGGC	1 cut(s)	159
BcoDI	GTCTC	1 cut(s)	9
BfrI	CTTAAG	1 cut(s)	392
BisI	GCNGC	2 cut(s)	150, 315
BlsI	GCNGC	2 cut(s)	151, 316
BmgT120I	GGNCC	2 cut(s)	386, 404
BmiI	GGNNCC	1 cut(s)	406
BmsI	GCATC	3 cut(s)	52, 90, 272
BpuEI	CTTGAG	2 cut(s)	32, 251
BsaXI	ACNNNNNCTCC	2 cut(s)	441, 471
Bse1I	ACTGG	1 cut(s)	334
BseGI	GGATG	1 cut(s)	67
BseNI	ACTGG	1 cut(s)	334
BseXI	GCAGC	2 cut(s)	136, 326
Bsh1236I	CGCG	3 cut(s)	123, 129, 144
BshFI	GGCC	2 cut(s)	387, 405
BsiHKAI	GWGCWC	3 cut(s)	48, 168, 292
BsmAI	GTCTC	1 cut(s)	9
BsnI	GGCC	2 cut(s)	387, 405
Bsp1286I	GDGCHC	3 cut(s)	48, 168, 292
BspACI	CCGC	1 cut(s)	65
BspANI	GGCC	2 cut(s)	387, 405
BspFNI	CGCG	3 cut(s)	123, 129, 144
BspHI	TCATGA	1 cut(s)	84
BspLI	GGNNCC	1 cut(s)	406
BspTI	CTTAAG	1 cut(s)	392
BsrI	ACTGG	1 cut(s)	334
Bst6I	CTCTTC	1 cut(s)	236
BstAFI	CTTAAG	1 cut(s)	392
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	331
BstDEI	CTNAG	1 cut(s)	8
BstF5I	GGATG	1 cut(s)	67
BstFNI	CGCG	3 cut(s)	123, 129, 144
BstHHI	GCGC	1 cut(s)	144
BstMAI	GTCTC	1 cut(s)	9
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 158, 188, 311
BstUI	CGCG	3 cut(s)	123, 129, 144
BstV1I	GCAGC	2 cut(s)	136, 326
BsuRI	GGCC	2 cut(s)	387, 405
BtsCI	GGATG	1 cut(s)	67
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	1 cut(s)	300
Cac8I	GCNNGC	1 cut(s)	331
CciI	TCATGA	1 cut(s)	84
CfoI	GCGC	1 cut(s)	144
Cfr13I	GGNCC	2 cut(s)	386, 404
Csp6I	GTAC	1 cut(s)	38
CviAII	CATG	3 cut(s)	85, 318, 379
CviQI	GTAC	1 cut(s)	38
DdeI	CTNAG	1 cut(s)	8
Eam1104I	CTCTTC	1 cut(s)	236
EarI	CTCTTC	1 cut(s)	236
Ecl136II	GAGCTC	3 cut(s)	46, 166, 290
Eco24I	GRGCYC	3 cut(s)	48, 168, 292
Eco53kI	GAGCTC	3 cut(s)	46, 166, 290
EcoICRI	GAGCTC	3 cut(s)	46, 166, 290
EcoO109I	RGGNCCY	1 cut(s)	404
EcoT38I	GRGCYC	3 cut(s)	48, 168, 292
FaeI	CATG	3 cut(s)	88, 321, 382
FaiI	YATR	4 cut(s)	86, 319, 376, 380
FatI	CATG	3 cut(s)	84, 317, 378
Fnu4HI	GCNGC	2 cut(s)	150, 315
FokI	GGATG	1 cut(s)	74
FriOI	GRGCYC	3 cut(s)	48, 168, 292
Fsp4HI	GCNGC	2 cut(s)	150, 315
GlaI	GCGC	1 cut(s)	143
GluI	GCNGC	2 cut(s)	150, 315
HaeIII	GGCC	2 cut(s)	387, 405
HhaI	GCGC	1 cut(s)	144
Hin1II	CATG	3 cut(s)	88, 321, 382
Hin6I	GCGC	1 cut(s)	142
HinP1I	GCGC	1 cut(s)	142
HindIII	AAGCTT	1 cut(s)	54
HinfI	GANTC	3 cut(s)	12, 81, 348
Hpy166II	GTNNAC	2 cut(s)	28, 352
Hpy188I	TCNGA	2 cut(s)	9, 252
Hpy188III	TCNNGA	4 cut(s)	74, 85, 272, 293
Hpy8I	GTNNAC	2 cut(s)	28, 352
HpyAV	CCTTC	3 cut(s)	82, 214, 316
HpyCH4IV	ACGT	1 cut(s)	417
HpyCH4V	TGCA	3 cut(s)	103, 263, 479
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 158, 188, 311
HpyF3I	CTNAG	1 cut(s)	8
HpySE526I	ACGT	1 cut(s)	417
Hsp92II	CATG	3 cut(s)	88, 321, 382
HspAI	GCGC	1 cut(s)	142
LmnI	GCTCC	2 cut(s)	43, 287
LpnPI	CCDG	5 cut(s)	26, 205, 347, 387, 421
Lsp1109I	GCAGC	2 cut(s)	136, 326
LweI	GCATC	3 cut(s)	52, 90, 272
MaeII	ACGT	1 cut(s)	417
MboII	GAAGA	3 cut(s)	128, 253, 425
MhlI	GDGCHC	3 cut(s)	48, 168, 292
MluCI	AATT	1 cut(s)	186
MlyI	GAGTC	1 cut(s)	357
MnlI	CCTC	5 cut(s)	87, 172, 319, 362, 399
MseI	TTAA	2 cut(s)	393, 483
MspCI	CTTAAG	1 cut(s)	392
MvnI	CGCG	3 cut(s)	123, 129, 144
MwoI	GCNNNNNNNGC	4 cut(s)	62, 158, 188, 311
NlaIII	CATG	3 cut(s)	88, 321, 382
NlaIV	GGNNCC	1 cut(s)	406
NmeAIII	GCCGAG	2 cut(s)	163, 187
PagI	TCATGA	1 cut(s)	84
PcsI	WCGNNNNNNNCGW	2 cut(s)	120, 141
PfeI	GAWTC	2 cut(s)	12, 81
PkrI	GCNGC	2 cut(s)	151, 316
PleI	GAGTC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	356
Psp124BI	GAGCTC	3 cut(s)	48, 168, 292
PspN4I	GGNNCC	1 cut(s)	406
PspPI	GGNCC	2 cut(s)	386, 404
RsaI	GTAC	1 cut(s)	39
RsaNI	GTAC	1 cut(s)	38
SacI	GAGCTC	3 cut(s)	48, 168, 292
SaqAI	TTAA	2 cut(s)	393, 483
SatI	GCNGC	2 cut(s)	150, 315
Sau96I	GGNCC	2 cut(s)	386, 404
SchI	GAGTC	1 cut(s)	357
SduI	GDGCHC	3 cut(s)	48, 168, 292
SfaNI	GCATC	3 cut(s)	52, 90, 272
SmlI	CTYRAG	3 cut(s)	47, 230, 392
SmoI	CTYRAG	3 cut(s)	47, 230, 392
Sse9I	AATT	1 cut(s)	186
SsiI	CCGC	1 cut(s)	65
SstI	GAGCTC	3 cut(s)	48, 168, 292
TaiI	ACGT	1 cut(s)	420
TaqI	TCGA	2 cut(s)	114, 436
TasI	AATT	1 cut(s)	186
TfiI	GAWTC	2 cut(s)	12, 81
Tru1I	TTAA	2 cut(s)	393, 483
Tru9I	TTAA	2 cut(s)	393, 483
TscAI	CASTG	1 cut(s)	307
TseI	GCWGC	2 cut(s)	149, 314
TspDTI	ATGAA	1 cut(s)	101
TspRI	CASTG	1 cut(s)	307
Vha464I	CTTAAG	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.