Rw6G021810

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
43362373 .. 43365390
3018 bp
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UTR
Exon/CDS
Intron
Rw6G021810.1

Sequence Viewer

Length: 354 bp
ATGTCTCTGAGAATCAAAGTGGTGGTGGACAAGTTCGTACAGGAGCTCAAGGAAGCTTTGGATGCGGATATTCAAGACAGAATCATGAAGGAGAGGGAGATGCAGAGCTACATCGAAGAACGCGAACGCGAAGTCGCCGAGCGCGAAGCTGCTTGGAAAGCCGAGCTCTCTCGCCGTGAGGCAGAAATTGCCAGACAAGAAGCAAGGCTGAAAATAGAGAAGGAAAACCTTGAGAAAGAGAAGAGTGTTCTGATGGGAACTGCATCAAATCAAGATAACCAAGATGGAGCTCTTGAAATCACTGTAAGTGGTGAGAAGTATCGATGTCTTAGGTTTGCCAAGGCAAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.7

Weight (kDa)

5.76

Isoelectric Point (pI)

39.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014056)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 123, 129, 144
AciI CCGC 1 cut(s) 65
AfaI GTAC 1 cut(s) 39
AgsI TTSAA 2 cut(s) 74, 296
AluBI AGCT 6 cut(s) 46, 56, 108, 149, 166, 290
AluI AGCT 6 cut(s) 46, 56, 108, 149, 166, 290
Alw21I GWGCWC 3 cut(s) 48, 168, 292
Alw26I GTCTC 1 cut(s) 9
ApeKI GCWGC 1 cut(s) 149
ArsI GACNNNNNNTTYG 2 cut(s) 117, 149
AspLEI GCGC 1 cut(s) 144
AsuHPI GGTGA 1 cut(s) 323
BanII GRGCYC 3 cut(s) 48, 168, 292
Bbv12I GWGCWC 3 cut(s) 48, 168, 292
BbvI GCAGC 1 cut(s) 136
BccI CCATC 2 cut(s) 247, 278
BceAI ACGGC 1 cut(s) 159
BcoDI GTCTC 1 cut(s) 9
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
BmsI GCATC 3 cut(s) 52, 90, 272
BpuEI CTTGAG 2 cut(s) 32, 251
Bsa29I ATCGAT 1 cut(s) 322
BsaJI CCNNGG 1 cut(s) 339
BseCI ATCGAT 1 cut(s) 322
BseDI CCNNGG 1 cut(s) 339
BseGI GGATG 1 cut(s) 67
BseXI GCAGC 1 cut(s) 136
Bsh1236I CGCG 3 cut(s) 123, 129, 144
BshVI ATCGAT 1 cut(s) 322
BsiHKAI GWGCWC 3 cut(s) 48, 168, 292
BsmAI GTCTC 1 cut(s) 9
Bsp1286I GDGCHC 3 cut(s) 48, 168, 292
BspACI CCGC 1 cut(s) 65
BspDI ATCGAT 1 cut(s) 322
BspFNI CGCG 3 cut(s) 123, 129, 144
BspHI TCATGA 1 cut(s) 84
BssECI CCNNGG 1 cut(s) 339
BssT1I CCWWGG 1 cut(s) 339
Bst4CI ACNGT 1 cut(s) 304
Bst6I CTCTTC 1 cut(s) 236
BstAPI GCANNNNNTGC 1 cut(s) 188
BstDEI CTNAG 2 cut(s) 8, 329
BstF5I GGATG 1 cut(s) 67
BstFNI CGCG 3 cut(s) 123, 129, 144
BstHHI GCGC 1 cut(s) 144
BstMAI GTCTC 1 cut(s) 9
BstMWI GCNNNNNNNGC 3 cut(s) 62, 158, 188
BstUI CGCG 3 cut(s) 123, 129, 144
BstV1I GCAGC 1 cut(s) 136
Bsu15I ATCGAT 1 cut(s) 322
BsuTUI ATCGAT 1 cut(s) 322
BtsCI GGATG 1 cut(s) 67
BtsIMutI CAGTG 1 cut(s) 300
CciI TCATGA 1 cut(s) 84
CfoI GCGC 1 cut(s) 144
ClaI ATCGAT 1 cut(s) 322
Csp6I GTAC 1 cut(s) 38
CviAII CATG 1 cut(s) 85
CviJI RGCY 8 cut(s) 46, 56, 108, 149, 161, 166, 208, 290
CviKI_1 RGCY 8 cut(s) 46, 56, 108, 149, 161, 166, 208, 290
CviQI GTAC 1 cut(s) 38
DdeI CTNAG 2 cut(s) 8, 329
Eam1104I CTCTTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 236
Ecl136II GAGCTC 3 cut(s) 46, 166, 290
Eco130I CCWWGG 1 cut(s) 339
Eco24I GRGCYC 3 cut(s) 48, 168, 292
Eco53kI GAGCTC 3 cut(s) 46, 166, 290
EcoICRI GAGCTC 3 cut(s) 46, 166, 290
EcoT14I CCWWGG 1 cut(s) 339
EcoT38I GRGCYC 3 cut(s) 48, 168, 292
ErhI CCWWGG 1 cut(s) 339
FaeI CATG 1 cut(s) 88
FaiI YATR 1 cut(s) 86
FatI CATG 1 cut(s) 84
Fnu4HI GCNGC 1 cut(s) 150
FokI GGATG 1 cut(s) 74
FriOI GRGCYC 3 cut(s) 48, 168, 292
Fsp4HI GCNGC 1 cut(s) 150
GlaI GCGC 1 cut(s) 143
GluI GCNGC 1 cut(s) 150
HhaI GCGC 1 cut(s) 144
Hin1II CATG 1 cut(s) 88
Hin6I GCGC 1 cut(s) 142
HinP1I GCGC 1 cut(s) 142
HindIII AAGCTT 1 cut(s) 54
HinfI GANTC 2 cut(s) 12, 81
HphI GGTGA 1 cut(s) 323
Hpy166II GTNNAC 1 cut(s) 28
Hpy188I TCNGA 2 cut(s) 9, 252
Hpy188III TCNNGA 4 cut(s) 74, 85, 272, 293
Hpy8I GTNNAC 1 cut(s) 28
HpyAV CCTTC 2 cut(s) 82, 214
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4V TGCA 2 cut(s) 103, 263
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 158, 188
HpyF3I CTNAG 2 cut(s) 8, 329
Hsp92II CATG 1 cut(s) 88
HspAI GCGC 1 cut(s) 142
LmnI GCTCC 2 cut(s) 43, 287
LpnPI CCDG 2 cut(s) 26, 205
Lsp1109I GCAGC 1 cut(s) 136
LweI GCATC 3 cut(s) 52, 90, 272
MboII GAAGA 2 cut(s) 128, 253
MhlI GDGCHC 3 cut(s) 48, 168, 292
MluCI AATT 1 cut(s) 186
MnlI CCTC 2 cut(s) 87, 172
MvnI CGCG 3 cut(s) 123, 129, 144
MwoI GCNNNNNNNGC 3 cut(s) 62, 158, 188
NlaIII CATG 1 cut(s) 88
NmeAIII GCCGAG 2 cut(s) 163, 187
PagI TCATGA 1 cut(s) 84
PcsI WCGNNNNNNNCGW 2 cut(s) 120, 141
PfeI GAWTC 2 cut(s) 12, 81
PkrI GCNGC 1 cut(s) 151
Psp124BI GAGCTC 3 cut(s) 48, 168, 292
RsaI GTAC 1 cut(s) 39
RsaNI GTAC 1 cut(s) 38
SacI GAGCTC 3 cut(s) 48, 168, 292
SatI GCNGC 1 cut(s) 150
SduI GDGCHC 3 cut(s) 48, 168, 292
SetI ASST 8 cut(s) 48, 58, 110, 151, 168, 231, 292, 335
SfaNI GCATC 3 cut(s) 52, 90, 272
SmlI CTYRAG 2 cut(s) 47, 230
SmoI CTYRAG 2 cut(s) 47, 230
Sse9I AATT 1 cut(s) 186
SsiI CCGC 1 cut(s) 65
SstI GAGCTC 3 cut(s) 48, 168, 292
StyI CCWWGG 1 cut(s) 339
TaaI ACNGT 1 cut(s) 304
TaqI TCGA 2 cut(s) 114, 322
TasI AATT 1 cut(s) 186
TfiI GAWTC 2 cut(s) 12, 81
TscAI CASTG 1 cut(s) 307
TseI GCWGC 1 cut(s) 149
TspDTI ATGAA 1 cut(s) 101
TspRI CASTG 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.