Rh6CG253800

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Reverse (-)
42443384 .. 42445427
2044 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG253800.1

Sequence Viewer

Length: 306 bp
ATGTCTCTGAGAATCAAGGTGGTGGTGGACAAGTTCGTACAGGAGCTCAAGGAAGCTTTGGATGCGGATATTCAAGACAGAATCATGAAGGAGAGGGAGATGCAGAGCTACATCGAAGAACGCGAACGCGAAGTCGCCGAGCGCGAAGCTGCTTGGAAAGCCGAGCTCTCTCGCCGTGAGGCAGAAATTGCCAGACAAGAAGCAAGGCTGAAAATAGAGAAGGAAAACCTTGAGAAAGAGAAGAGTGTTCTGATGGGAACTGCATCAAATCAAGATAACCAAGATGGAGCTCTTGAAATCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.84

Weight (kDa)

4.88

Isoelectric Point (pI)

43.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014056)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 123, 129, 144
AciI CCGC 1 cut(s) 65
AfaI GTAC 1 cut(s) 39
AgsI TTSAA 2 cut(s) 74, 296
AluBI AGCT 6 cut(s) 46, 56, 108, 149, 166, 290
AluI AGCT 6 cut(s) 46, 56, 108, 149, 166, 290
Alw21I GWGCWC 3 cut(s) 48, 168, 292
Alw26I GTCTC 1 cut(s) 9
ApeKI GCWGC 1 cut(s) 149
ArsI GACNNNNNNTTYG 2 cut(s) 117, 149
AspLEI GCGC 1 cut(s) 144
BanII GRGCYC 3 cut(s) 48, 168, 292
Bbv12I GWGCWC 3 cut(s) 48, 168, 292
BbvI GCAGC 1 cut(s) 136
BccI CCATC 2 cut(s) 247, 278
BceAI ACGGC 1 cut(s) 159
BcoDI GTCTC 1 cut(s) 9
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
BmsI GCATC 3 cut(s) 52, 90, 272
BpuEI CTTGAG 2 cut(s) 32, 251
BseGI GGATG 1 cut(s) 67
BseXI GCAGC 1 cut(s) 136
Bsh1236I CGCG 3 cut(s) 123, 129, 144
BsiHKAI GWGCWC 3 cut(s) 48, 168, 292
BsmAI GTCTC 1 cut(s) 9
Bsp1286I GDGCHC 3 cut(s) 48, 168, 292
BspACI CCGC 1 cut(s) 65
BspFNI CGCG 3 cut(s) 123, 129, 144
BspHI TCATGA 1 cut(s) 84
Bst6I CTCTTC 1 cut(s) 236
BstAPI GCANNNNNTGC 1 cut(s) 188
BstDEI CTNAG 1 cut(s) 8
BstF5I GGATG 1 cut(s) 67
BstFNI CGCG 3 cut(s) 123, 129, 144
BstHHI GCGC 1 cut(s) 144
BstMAI GTCTC 1 cut(s) 9
BstMWI GCNNNNNNNGC 3 cut(s) 62, 158, 188
BstUI CGCG 3 cut(s) 123, 129, 144
BstV1I GCAGC 1 cut(s) 136
BtsCI GGATG 1 cut(s) 67
CciI TCATGA 1 cut(s) 84
CfoI GCGC 1 cut(s) 144
Csp6I GTAC 1 cut(s) 38
CviAII CATG 1 cut(s) 85
CviJI RGCY 8 cut(s) 46, 56, 108, 149, 161, 166, 208, 290
CviKI_1 RGCY 8 cut(s) 46, 56, 108, 149, 161, 166, 208, 290
CviQI GTAC 1 cut(s) 38
DdeI CTNAG 1 cut(s) 8
Eam1104I CTCTTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 236
Ecl136II GAGCTC 3 cut(s) 46, 166, 290
Eco24I GRGCYC 3 cut(s) 48, 168, 292
Eco53kI GAGCTC 3 cut(s) 46, 166, 290
EcoICRI GAGCTC 3 cut(s) 46, 166, 290
EcoT38I GRGCYC 3 cut(s) 48, 168, 292
FaeI CATG 1 cut(s) 88
FaiI YATR 1 cut(s) 86
FatI CATG 1 cut(s) 84
Fnu4HI GCNGC 1 cut(s) 150
FokI GGATG 1 cut(s) 74
FriOI GRGCYC 3 cut(s) 48, 168, 292
Fsp4HI GCNGC 1 cut(s) 150
GlaI GCGC 1 cut(s) 143
GluI GCNGC 1 cut(s) 150
HhaI GCGC 1 cut(s) 144
Hin1II CATG 1 cut(s) 88
Hin6I GCGC 1 cut(s) 142
HinP1I GCGC 1 cut(s) 142
HindIII AAGCTT 1 cut(s) 54
HinfI GANTC 2 cut(s) 12, 81
Hpy166II GTNNAC 1 cut(s) 28
Hpy188I TCNGA 2 cut(s) 9, 252
Hpy188III TCNNGA 4 cut(s) 74, 85, 272, 293
Hpy8I GTNNAC 1 cut(s) 28
HpyAV CCTTC 2 cut(s) 82, 214
HpyCH4V TGCA 2 cut(s) 103, 263
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 158, 188
HpyF3I CTNAG 1 cut(s) 8
Hsp92II CATG 1 cut(s) 88
HspAI GCGC 1 cut(s) 142
LmnI GCTCC 2 cut(s) 43, 287
LpnPI CCDG 2 cut(s) 26, 205
Lsp1109I GCAGC 1 cut(s) 136
LweI GCATC 3 cut(s) 52, 90, 272
MboII GAAGA 2 cut(s) 128, 253
MhlI GDGCHC 3 cut(s) 48, 168, 292
MluCI AATT 1 cut(s) 186
MnlI CCTC 2 cut(s) 87, 172
MvnI CGCG 3 cut(s) 123, 129, 144
MwoI GCNNNNNNNGC 3 cut(s) 62, 158, 188
NlaIII CATG 1 cut(s) 88
NmeAIII GCCGAG 2 cut(s) 163, 187
PagI TCATGA 1 cut(s) 84
PcsI WCGNNNNNNNCGW 2 cut(s) 120, 141
PfeI GAWTC 2 cut(s) 12, 81
PkrI GCNGC 1 cut(s) 151
Psp124BI GAGCTC 3 cut(s) 48, 168, 292
RsaI GTAC 1 cut(s) 39
RsaNI GTAC 1 cut(s) 38
SacI GAGCTC 3 cut(s) 48, 168, 292
SatI GCNGC 1 cut(s) 150
SduI GDGCHC 3 cut(s) 48, 168, 292
SetI ASST 8 cut(s) 21, 48, 58, 110, 151, 168, 231, 292
SfaNI GCATC 3 cut(s) 52, 90, 272
SmlI CTYRAG 2 cut(s) 47, 230
SmoI CTYRAG 2 cut(s) 47, 230
Sse9I AATT 1 cut(s) 186
SsiI CCGC 1 cut(s) 65
SstI GAGCTC 3 cut(s) 48, 168, 292
TaqI TCGA 1 cut(s) 114
TasI AATT 1 cut(s) 186
TfiI GAWTC 2 cut(s) 12, 81
TseI GCWGC 1 cut(s) 149
TspDTI ATGAA 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.