AT2G17705

protein At4g08330, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0015322
Physical Location & Seq
Forward (+)
7692396 .. 7693253
858 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G17705.1

Sequence Viewer

Length: 384 bp
ATGGCTTCAACGATCTACACTTGCAAAGAATGCGGATCAGATCTGAATCTAAACCCTAACGATTTATTTCCACCGGATTTCTACTTCGAAGCCGGTAACAAAGGAACACTCTCATTCGCCGCCGTCGACGCCGAGAAATTCCGATTCGAGAAAGAAGATAAGATCATGCCTTTCTTCGAAACCCTAAATTACTGGGGAATCCAACGGAAACGAACCAAGATCAAGTGCACTAGCTGCAACCACCTCATCGGTTACATCTACGACGATGGTCCTCCTCTCACTGGTGGTATTGGCCAATACGGATTTGGTCCGAGTCAAGTCATTCCTCGTGCTCCTCGGTATCGATTCAAAACCAAGGCGGTTCAAGTCTCGTCCCAGACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SelR

Protein Analysis

127

Amino Acids

14.37

Weight (kDa)

8.67

Isoelectric Point (pI)

28.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At4g08330 PF24046 3 - 124 2.5e-41 At4g08330 beta-tent
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015322)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17705
fragaria_vesca FvH4_1g11071
malus_domestica MD02G1123500.v1.1 MD15G1237300.v1.1
prunus_persica Prupe.7G175100_v2.0.a1
pyrus_communis pycom02g09620
rosa_chinensis RchiOBHm_Chr2g0098341
rosa_laevigata RLG00000016792
rosa_multiflora Rmu_sc0003434.1_g000003
rosa_roxburghii Rroxscaffold_2G00144050
rosa_rugosa Rorug02G0072200
rosa_samantha Rh2AG119300 Rh2BG122500 Rh2CG124100 Rh2DG124200
rosa_wichuraiana Rw2G009350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 126
AciI CCGC 3 cut(s) 33, 120, 359
AclWI GGATC 1 cut(s) 43
AcoI YGGCCR 1 cut(s) 292
AcsI RAATTY 1 cut(s) 137
AcyI GRCGYC 1 cut(s) 129
AfiI CCNNNNNNNGG 1 cut(s) 281
AgsI TTSAA 3 cut(s) 9, 349, 365
AluBI AGCT 1 cut(s) 234
AluI AGCT 1 cut(s) 234
Alw21I GWGCWC 2 cut(s) 230, 334
Alw26I GTCTC 1 cut(s) 373
Alw44I GTGCAC 1 cut(s) 226
AlwI GGATC 1 cut(s) 43
AoxI GGCC 1 cut(s) 292
ApaLI GTGCAC 1 cut(s) 226
ApeKI GCWGC 1 cut(s) 234
ApoI RAATTY 1 cut(s) 137
AspS9I GGNCC 2 cut(s) 269, 308
AsuII TTCGAA 2 cut(s) 87, 177
AvaII GGWCC 2 cut(s) 269, 308
BaeGI GKGCMC 1 cut(s) 230
BalI TGGCCA 1 cut(s) 294
BauI CACGAG 1 cut(s) 327
Bbv12I GWGCWC 2 cut(s) 230, 334
BbvI GCAGC 1 cut(s) 221
BccI CCATC 1 cut(s) 260
BceAI ACGGC 1 cut(s) 107
BcoDI GTCTC 1 cut(s) 373
BfaI CTAG 1 cut(s) 231
BglII AGATCT 1 cut(s) 40
BisI GCNGC 2 cut(s) 120, 235
BlsI GCNGC 2 cut(s) 121, 236
Bme18I GGWCC 2 cut(s) 269, 308
BmgT120I GGNCC 2 cut(s) 269, 308
BmrI ACTGGG 1 cut(s) 202
BmuI ACTGGG 1 cut(s) 202
BoxI GACNNNNGTC 1 cut(s) 267
Bpu14I TTCGAA 2 cut(s) 87, 177
Bsa29I ATCGAT 1 cut(s) 343
BsaBI GATNNNNATC 1 cut(s) 45
BsaHI GRCGYC 1 cut(s) 129
BsaJI CCNNGG 2 cut(s) 335, 354
BsaWI WCCGGW 1 cut(s) 73
Bsc4I CCNNNNNNNGG 1 cut(s) 281
Bse118I RCCGGY 1 cut(s) 92
Bse1I ACTGG 2 cut(s) 197, 286
Bse8I GATNNNNATC 1 cut(s) 45
BseCI ATCGAT 1 cut(s) 343
BseDI CCNNGG 2 cut(s) 335, 354
BseJI GATNNNNATC 1 cut(s) 45
BseLI CCNNNNNNNGG 1 cut(s) 281
BseNI ACTGG 2 cut(s) 197, 286
BseRI GAGGAG 2 cut(s) 264, 324
BseSI GKGCMC 1 cut(s) 230
BseXI GCAGC 1 cut(s) 221
BshFI GGCC 1 cut(s) 294
BshVI ATCGAT 1 cut(s) 343
BsiHKAI GWGCWC 2 cut(s) 230, 334
BsiSI CCGG 2 cut(s) 74, 93
BslFI GGGAC 1 cut(s) 358
BslI CCNNNNNNNGG 1 cut(s) 281
BsmAI GTCTC 1 cut(s) 373
BsmFI GGGAC 1 cut(s) 358
BsmI GAATGC 1 cut(s) 35
BsnI GGCC 1 cut(s) 294
Bsp119I TTCGAA 2 cut(s) 87, 177
Bsp1286I GDGCHC 2 cut(s) 230, 334
Bsp143I GATC 5 cut(s) 12, 35, 40, 162, 219
BspACI CCGC 3 cut(s) 33, 120, 359
BspANI GGCC 1 cut(s) 294
BspDI ATCGAT 1 cut(s) 343
BspPI GGATC 1 cut(s) 43
BspT104I TTCGAA 2 cut(s) 87, 177
BsrFI RCCGGY 1 cut(s) 92
BsrI ACTGG 2 cut(s) 197, 286
BssAI RCCGGY 1 cut(s) 92
BssECI CCNNGG 2 cut(s) 335, 354
BssMI GATC 5 cut(s) 12, 35, 40, 162, 219
BssNI GRCGYC 1 cut(s) 129
BssSI CACGAG 1 cut(s) 327
BssT1I CCWWGG 1 cut(s) 354
Bst2BI CACGAG 1 cut(s) 327
BstACI GRCGYC 1 cut(s) 129
BstAPI GCANNNNNTGC 2 cut(s) 30, 234
BstBI TTCGAA 2 cut(s) 87, 177
BstDEI CTNAG 1 cut(s) 381
BstKTI GATC 5 cut(s) 15, 38, 43, 165, 222
BstMAI GTCTC 1 cut(s) 373
BstMBI GATC 5 cut(s) 12, 35, 40, 162, 219
BstMWI GCNNNNNNNGC 3 cut(s) 30, 128, 234
BstPAI GACNNNNGTC 1 cut(s) 267
BstSLI GKGCMC 1 cut(s) 230
BstV1I GCAGC 1 cut(s) 221
BstX2I RGATCY 1 cut(s) 40
BstYI RGATCY 1 cut(s) 40
Bsu15I ATCGAT 1 cut(s) 343
BsuRI GGCC 1 cut(s) 294
BsuTUI ATCGAT 1 cut(s) 343
BtsIMutI CAGTG 1 cut(s) 279
Cfr10I RCCGGY 1 cut(s) 92
Cfr13I GGNCC 2 cut(s) 269, 308
ClaI ATCGAT 1 cut(s) 343
CseI GACGC 1 cut(s) 137
CviAII CATG 1 cut(s) 166
CviJI RGCY 4 cut(s) 5, 92, 234, 294
CviKI_1 RGCY 4 cut(s) 5, 92, 234, 294
DdeI CTNAG 1 cut(s) 381
DpnI GATC 5 cut(s) 14, 37, 42, 164, 221
DpnII GATC 5 cut(s) 12, 35, 40, 162, 219
EaeI YGGCCR 1 cut(s) 292
Eco130I CCWWGG 1 cut(s) 354
Eco47I GGWCC 2 cut(s) 269, 308
EcoT14I CCWWGG 1 cut(s) 354
ErhI CCWWGG 1 cut(s) 354
FaeI CATG 1 cut(s) 169
FaiI YATR 1 cut(s) 167
FaqI GGGAC 1 cut(s) 358
FatI CATG 1 cut(s) 165
FblI GTMKAC 1 cut(s) 126
Fnu4HI GCNGC 2 cut(s) 120, 235
Fsp4HI GCNGC 2 cut(s) 120, 235
FspBI CTAG 1 cut(s) 231
GluI GCNGC 2 cut(s) 120, 235
HaeIII GGCC 1 cut(s) 294
HapII CCGG 2 cut(s) 74, 93
HgaI GACGC 1 cut(s) 137
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 1 cut(s) 169
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HinfI GANTC 5 cut(s) 46, 144, 198, 313, 345
HpaII CCGG 2 cut(s) 74, 93
Hpy166II GTNNAC 2 cut(s) 127, 228
Hpy188I TCNGA 4 cut(s) 40, 45, 143, 312
Hpy188III TCNNGA 1 cut(s) 148
Hpy8I GTNNAC 2 cut(s) 127, 228
Hpy99I CGWCG 3 cut(s) 128, 131, 266
HpyCH4V TGCA 3 cut(s) 24, 228, 237
HpyF10VI GCNNNNNNNGC 3 cut(s) 30, 128, 234
HpyF3I CTNAG 1 cut(s) 381
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 1 cut(s) 169
Kzo9I GATC 5 cut(s) 12, 35, 40, 162, 219
LmnI GCTCC 1 cut(s) 337
LpnPI CCDG 4 cut(s) 87, 106, 178, 267
Lsp1109I GCAGC 1 cut(s) 221
MaeI CTAG 1 cut(s) 231
MaeIII GTNAC 2 cut(s) 95, 251
MalI GATC 5 cut(s) 14, 37, 42, 164, 221
MboI GATC 5 cut(s) 12, 35, 40, 162, 219
MboII GAAGA 2 cut(s) 166, 167
MflI RGATCY 1 cut(s) 40
MhlI GDGCHC 2 cut(s) 230, 334
MlsI TGGCCA 1 cut(s) 294
MluCI AATT 2 cut(s) 137, 187
MluNI TGGCCA 1 cut(s) 294
MlyI GAGTC 1 cut(s) 322
MmeI TCCRAC 1 cut(s) 226
MnlI CCTC 5 cut(s) 254, 282, 285, 336, 345
Mox20I TGGCCA 1 cut(s) 294
MscI TGGCCA 1 cut(s) 294
Msp20I TGGCCA 1 cut(s) 294
MspI CCGG 2 cut(s) 74, 93
Mva1269I GAATGC 1 cut(s) 35
MwoI GCNNNNNNNGC 3 cut(s) 30, 128, 234
NdeII GATC 5 cut(s) 12, 35, 40, 162, 219
NlaIII CATG 1 cut(s) 169
NmeAIII GCCGAG 1 cut(s) 157
NspV TTCGAA 2 cut(s) 87, 177
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PctI GAATGC 1 cut(s) 35
PfeI GAWTC 4 cut(s) 46, 144, 198, 345
PkrI GCNGC 2 cut(s) 121, 236
PleI GAGTC 1 cut(s) 321
PpsI GAGTC 1 cut(s) 321
PshAI GACNNNNGTC 1 cut(s) 267
PspPI GGNCC 2 cut(s) 269, 308
PsuI RGATCY 1 cut(s) 40
SalI GTCGAC 1 cut(s) 125
SatI GCNGC 2 cut(s) 120, 235
Sau3AI GATC 5 cut(s) 12, 35, 40, 162, 219
Sau96I GGNCC 2 cut(s) 269, 308
SchI GAGTC 1 cut(s) 322
SduI GDGCHC 2 cut(s) 230, 334
SetI ASST 2 cut(s) 236, 246
SfuI TTCGAA 2 cut(s) 87, 177
SgrDI CGTCGACG 1 cut(s) 125
SinI GGWCC 2 cut(s) 269, 308
Sse9I AATT 2 cut(s) 137, 187
SsiI CCGC 3 cut(s) 33, 120, 359
SspMI CTAG 1 cut(s) 231
StyI CCWWGG 1 cut(s) 354
TaqI TCGA 5 cut(s) 87, 126, 147, 177, 343
TasI AATT 2 cut(s) 137, 187
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 4 cut(s) 46, 144, 198, 345
TscAI CASTG 1 cut(s) 286
TseI GCWGC 1 cut(s) 234
TspGWI ACGGA 2 cut(s) 220, 315
TspRI CASTG 1 cut(s) 286
VneI GTGCAC 1 cut(s) 226
VpaK11BI GGWCC 2 cut(s) 269, 308
XapI RAATTY 1 cut(s) 137
XcmI CCANNNNNNNNNTGG 1 cut(s) 302
XmiI GTMKAC 1 cut(s) 126
XspI CTAG 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.