Prupe.7G175100_v2.0.a1

protein At4g08330, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0015322
Physical Location & Seq
Reverse (-)
17454710 .. 17455605
896 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G175100.1

Sequence Viewer

Length: 432 bp
ATGCGAAACGTCTTCTTCTCCAAACCCAAATTCAACTCAACAATGGCTTCCGATTCGATCTACACCTGCACGGAGTGCGGGGCAAACCTGAACCTGAGCGCCTCCTATCTCTACCCACCGGACTTCTTCTTCGAGGCCGGCAACAAGGGAACGCTGTCGTTTTCGTGGGTCGACGGCACCAAGTTCAGGTTCGAGAAGGAGGACAAGATCAGGCCCTTTTTCGAAACCAGAAACTACTGGGGCATCCAGAGGACCAGGACCAAGATCAAGTGCAACGGCTGCGGGCGGCTTGTCGGGCATATCTACGATGATGGCACCCCCATGACTGACAGTCCAGGTCAGCTCCACATGGGGCCCAGCCAGGTCATTCCCAGAGCTGCTAGATATAGATTCAAGACCAAGGCCCTTCGTGTTTCATCGTCTGGGACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SelR

Protein Analysis

144

Amino Acids

16.25

Weight (kDa)

9.62

Isoelectric Point (pI)

25.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015322)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17705
fragaria_vesca FvH4_1g11071
malus_domestica MD02G1123500.v1.1 MD15G1237300.v1.1
prunus_persica Prupe.7G175100_v2.0.a1
pyrus_communis pycom02g09620
rosa_chinensis RchiOBHm_Chr2g0098341
rosa_laevigata RLG00000016792
rosa_multiflora Rmu_sc0003434.1_g000003
rosa_roxburghii Rroxscaffold_2G00144050
rosa_rugosa Rorug02G0072200
rosa_samantha Rh2AG119300 Rh2BG122500 Rh2CG124100 Rh2DG124200
rosa_wichuraiana Rw2G009350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 74
Acc36I ACCTGC 1 cut(s) 74
AccB1I GGYRCC 2 cut(s) 176, 314
AccI GTMKAC 1 cut(s) 171
AciI CCGC 3 cut(s) 78, 282, 286
AcsI RAATTY 1 cut(s) 29
AdeI CACNNNGTG 1 cut(s) 75
AfiI CCNNNNNNNGG 1 cut(s) 186
AgsI TTSAA 2 cut(s) 34, 394
AhdI GACNNNNNGTC 1 cut(s) 330
AjnI CCWGG 3 cut(s) 254, 334, 360
AjuI GAANNNNNNNTTGG 4 cut(s) 14, 46, 173, 205
AluBI AGCT 2 cut(s) 343, 377
AluI AGCT 2 cut(s) 343, 377
AoxI GGCC 4 cut(s) 135, 212, 353, 402
ApaI GGGCCC 1 cut(s) 357
ApeKI GCWGC 2 cut(s) 279, 377
ApoI RAATTY 1 cut(s) 29
ArsI GACNNNNNNTTYG 2 cut(s) 113, 145
AspLEI GCGC 1 cut(s) 101
AspS9I GGNCC 6 cut(s) 213, 252, 258, 353, 354, 403
AsuII TTCGAA 1 cut(s) 222
AvaII GGWCC 2 cut(s) 252, 258
BaeGI GKGCMC 1 cut(s) 357
BanI GGYRCC 2 cut(s) 176, 314
BanII GRGCYC 1 cut(s) 357
BbsI GAAGAC 1 cut(s) 4
BbvI GCAGC 2 cut(s) 266, 364
BccI CCATC 1 cut(s) 305
BceAI ACGGC 2 cut(s) 190, 292
BciT130I CCWGG 3 cut(s) 256, 336, 362
BfaI CTAG 1 cut(s) 381
BfoI RGCGCY 1 cut(s) 102
BfuAI ACCTGC 1 cut(s) 74
BisI GCNGC 3 cut(s) 280, 287, 378
BlsI GCNGC 3 cut(s) 281, 288, 379
Bme1390I CCNGG 3 cut(s) 256, 336, 362
Bme18I GGWCC 2 cut(s) 252, 258
BmeRI GACNNNNNGTC 1 cut(s) 330
BmgT120I GGNCC 6 cut(s) 213, 252, 258, 353, 354, 403
BmiI GGNNCC 4 cut(s) 178, 316, 354, 355
BmrFI CCNGG 3 cut(s) 256, 336, 362
BmrI ACTGGG 1 cut(s) 247
BmsI GCATC 1 cut(s) 252
BmuI ACTGGG 1 cut(s) 247
BpiI GAAGAC 1 cut(s) 4
Bpu10I CCTNAGC 1 cut(s) 95
Bpu14I TTCGAA 1 cut(s) 222
BsaJI CCNNGG 1 cut(s) 399
BsaWI WCCGGW 1 cut(s) 118
Bsc4I CCNNNNNNNGG 1 cut(s) 186
Bse118I RCCGGY 1 cut(s) 137
Bse1I ACTGG 1 cut(s) 242
BseBI CCWGG 3 cut(s) 256, 336, 362
BseDI CCNNGG 1 cut(s) 399
BseGI GGATG 1 cut(s) 243
BseLI CCNNNNNNNGG 1 cut(s) 186
BseMII CTCAG 1 cut(s) 86
BseNI ACTGG 1 cut(s) 242
BseSI GKGCMC 1 cut(s) 357
BseXI GCAGC 2 cut(s) 266, 364
BseYI CCCAGC 1 cut(s) 356
BsgI GTGCAG 1 cut(s) 52
BshFI GGCC 4 cut(s) 137, 214, 355, 404
BshNI GGYRCC 2 cut(s) 176, 314
BsiSI CCGG 2 cut(s) 119, 138
BslI CCNNNNNNNGG 1 cut(s) 186
BsnI GGCC 4 cut(s) 137, 214, 355, 404
Bsp119I TTCGAA 1 cut(s) 222
Bsp120I GGGCCC 1 cut(s) 353
Bsp1286I GDGCHC 1 cut(s) 357
Bsp143I GATC 3 cut(s) 57, 207, 264
BspACI CCGC 3 cut(s) 78, 282, 286
BspANI GGCC 4 cut(s) 137, 214, 355, 404
BspCNI CTCAG 1 cut(s) 87
BspLI GGNNCC 4 cut(s) 178, 316, 354, 355
BspMI ACCTGC 1 cut(s) 74
BspT104I TTCGAA 1 cut(s) 222
BspT107I GGYRCC 2 cut(s) 176, 314
BsrFI RCCGGY 1 cut(s) 137
BsrI ACTGG 1 cut(s) 242
BssAI RCCGGY 1 cut(s) 137
BssECI CCNNGG 1 cut(s) 399
BssMI GATC 3 cut(s) 57, 207, 264
BssT1I CCWWGG 1 cut(s) 399
Bst2UI CCWGG 3 cut(s) 256, 336, 362
Bst4CI ACNGT 1 cut(s) 332
BstAPI GCANNNNNTGC 2 cut(s) 75, 279
BstBI TTCGAA 1 cut(s) 222
BstC8I GCNNGC 2 cut(s) 139, 284
BstDEI CTNAG 2 cut(s) 95, 429
BstF5I GGATG 1 cut(s) 243
BstH2I RGCGCY 1 cut(s) 102
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 3 cut(s) 60, 210, 267
BstMBI GATC 3 cut(s) 57, 207, 264
BstMWI GCNNNNNNNGC 3 cut(s) 75, 279, 295
BstNI CCWGG 3 cut(s) 256, 336, 362
BstSCI CCNGG 3 cut(s) 254, 334, 360
BstSLI GKGCMC 1 cut(s) 357
BstV1I GCAGC 2 cut(s) 266, 364
BstV2I GAAGAC 1 cut(s) 4
BsuRI GGCC 4 cut(s) 137, 214, 355, 404
BtsCI GGATG 1 cut(s) 243
BveI ACCTGC 1 cut(s) 74
Cac8I GCNNGC 2 cut(s) 139, 284
CfoI GCGC 1 cut(s) 101
Cfr10I RCCGGY 1 cut(s) 137
Cfr13I GGNCC 6 cut(s) 213, 252, 258, 353, 354, 403
CviAII CATG 2 cut(s) 322, 349
DdeI CTNAG 2 cut(s) 95, 429
DpnI GATC 3 cut(s) 59, 209, 266
DpnII GATC 3 cut(s) 57, 207, 264
DraIII CACNNNGTG 1 cut(s) 75
DriI GACNNNNNGTC 1 cut(s) 330
Eam1105I GACNNNNNGTC 1 cut(s) 330
Eco130I CCWWGG 1 cut(s) 399
Eco24I GRGCYC 1 cut(s) 357
Eco47I GGWCC 2 cut(s) 252, 258
EcoO109I RGGNCCY 3 cut(s) 213, 353, 403
EcoRII CCWGG 3 cut(s) 254, 334, 360
EcoT14I CCWWGG 1 cut(s) 399
EcoT38I GRGCYC 1 cut(s) 357
ErhI CCWWGG 1 cut(s) 399
FaeI CATG 2 cut(s) 325, 352
FaiI YATR 4 cut(s) 300, 323, 350, 387
FatI CATG 2 cut(s) 321, 348
FauI CCCGC 2 cut(s) 71, 275
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 3 cut(s) 280, 287, 378
FokI GGATG 1 cut(s) 230
FriOI GRGCYC 1 cut(s) 357
Fsp4HI GCNGC 3 cut(s) 280, 287, 378
FspBI CTAG 1 cut(s) 381
GlaI GCGC 1 cut(s) 100
GluI GCNGC 3 cut(s) 280, 287, 378
GsaI CCCAGC 1 cut(s) 360
HaeII RGCGCY 1 cut(s) 102
HaeIII GGCC 4 cut(s) 137, 214, 355, 404
HapII CCGG 2 cut(s) 119, 138
HhaI GCGC 1 cut(s) 101
Hin1II CATG 2 cut(s) 325, 352
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 2 cut(s) 53, 390
HpaII CCGG 2 cut(s) 119, 138
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 1 cut(s) 52
Hpy188III TCNNGA 3 cut(s) 193, 247, 394
Hpy8I GTNNAC 1 cut(s) 172
Hpy99I CGWCG 1 cut(s) 176
HpyAV CCTTC 2 cut(s) 190, 416
HpyCH4III ACNGT 1 cut(s) 332
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 2 cut(s) 69, 273
HpyF10VI GCNNNNNNNGC 3 cut(s) 75, 279, 295
HpyF3I CTNAG 2 cut(s) 95, 429
HpySE526I ACGT 1 cut(s) 9
Hsp92II CATG 2 cut(s) 325, 352
HspAI GCGC 1 cut(s) 99
KroI GCCGGC 1 cut(s) 137
KroNI GCCGGC 1 cut(s) 139
Kzo9I GATC 3 cut(s) 57, 207, 264
LmnI GCTCC 1 cut(s) 348
Lsp1109I GCAGC 2 cut(s) 266, 364
LweI GCATC 1 cut(s) 252
MaeI CTAG 1 cut(s) 381
MaeII ACGT 1 cut(s) 9
MalI GATC 3 cut(s) 59, 209, 266
MboI GATC 3 cut(s) 57, 207, 264
MboII GAAGA 4 cut(s) 4, 7, 118, 121
MhlI GDGCHC 1 cut(s) 357
MluCI AATT 1 cut(s) 29
MnlI CCTC 4 cut(s) 112, 127, 193, 243
MroNI GCCGGC 1 cut(s) 137
MslI CAYNNNNRTG 1 cut(s) 320
MspI CCGG 2 cut(s) 119, 138
MspR9I CCNGG 3 cut(s) 256, 336, 362
MvaI CCWGG 3 cut(s) 256, 336, 362
MwoI GCNNNNNNNGC 3 cut(s) 75, 279, 295
NaeI GCCGGC 1 cut(s) 139
NdeII GATC 3 cut(s) 57, 207, 264
NgoMIV GCCGGC 1 cut(s) 137
NlaIII CATG 2 cut(s) 325, 352
NlaIV GGNNCC 4 cut(s) 178, 316, 354, 355
NspV TTCGAA 1 cut(s) 222
PaqCI CACCTGC 1 cut(s) 74
PdiI GCCGGC 1 cut(s) 139
PfeI GAWTC 2 cut(s) 53, 390
PkrI GCNGC 3 cut(s) 281, 288, 379
Psp6I CCWGG 3 cut(s) 254, 334, 360
PspFI CCCAGC 1 cut(s) 356
PspGI CCWGG 3 cut(s) 254, 334, 360
PspN4I GGNNCC 4 cut(s) 178, 316, 354, 355
PspOMI GGGCCC 1 cut(s) 353
PspPI GGNCC 6 cut(s) 213, 252, 258, 353, 354, 403
RseI CAYNNNNRTG 1 cut(s) 320
SalI GTCGAC 1 cut(s) 170
SatI GCNGC 3 cut(s) 280, 287, 378
Sau3AI GATC 3 cut(s) 57, 207, 264
Sau96I GGNCC 6 cut(s) 213, 252, 258, 353, 354, 403
ScrFI CCNGG 3 cut(s) 256, 336, 362
SduI GDGCHC 1 cut(s) 357
SetI ASST 9 cut(s) 12, 68, 90, 96, 191, 340, 345, 366, 379
SfaNI GCATC 1 cut(s) 252
SfuI TTCGAA 1 cut(s) 222
SinI GGWCC 2 cut(s) 252, 258
SmiMI CAYNNNNRTG 1 cut(s) 320
Sse9I AATT 1 cut(s) 29
SsiI CCGC 3 cut(s) 78, 282, 286
SspMI CTAG 1 cut(s) 381
StyD4I CCNGG 3 cut(s) 254, 334, 360
StyI CCWWGG 1 cut(s) 399
TaaI ACNGT 1 cut(s) 332
TaiI ACGT 1 cut(s) 12
TaqI TCGA 5 cut(s) 56, 132, 171, 192, 222
TasI AATT 1 cut(s) 29
TauI GCSGC 1 cut(s) 289
TfiI GAWTC 2 cut(s) 53, 390
TseI GCWGC 2 cut(s) 279, 377
TspDTI ATGAA 1 cut(s) 405
TspGWI ACGGA 1 cut(s) 86
VpaK11BI GGWCC 2 cut(s) 252, 258
XapI RAATTY 1 cut(s) 29
XmiI GTMKAC 1 cut(s) 171
XspI CTAG 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.