RLG00000016792

protein At4g08330, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0015322
Physical Location & Seq
Forward (+)
10026458 .. 10028733
2276 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016792

Sequence Viewer

Length: 888 bp
ATGACGACTCGTCGGAGGATGGAAGAATATCCAGAGGAAATGCGGAGTCCGCCGATGAGTCTGGTCTCAGTCGTCGGCTGCTCGGAGCTCCACTCCTTCATCTCCACACACCTCTACTCCCTCGACCCTCTGATCAACACCTTGGCCTTGCCGGACCTCTCCAAGGTCTCTCTCCTCTTACCTTCCCCCAAGCCCAATCCCGCCGACTCCTCCTCCTCAGCCTCCGCCGCCGCTCCTCCTCCCGCCGGAATTTTGAAGCGCGATTGGCTTCTCAAGCACCGCACCAAAGTCCCCGCCGTTGTCGCCGCCCTCATCTCCTCGGATCGGGTCTCCGGCGACCCGGCCCAGTGGCTCGAGCTCTGCTCCGAATCGACAATCTCAAGGGGCTTATCCGCGGTCGGAGCATCAAATTGGTCATCGTCGTCGTCAACTCCCACTCCACTGCGAAACGCGAAAGAGCGAATACCCCAATCGCCAAAATCCAAAATGACTTCTGCATCTTCTTCTTCTTCTCCGGTCTACACCTGCACGGAGTGCGGAGCAAACCTGAACCTGAACGCGGCCTATCTCTACCCGCCGGACGTTTACTTCGAGGCCGGCAACAAGAAAACGCTGTCGTTTTCGGGGATCGACACGACCAAGTTCAGGTTCGAGAAGGAGGACAAGATCATGCCCTTCTGGGAGACCCGAAACTATTGGGGGATCCAACGGACGAGGACCAAGATCAAGTGCAACGGATGTGGGCGGCTGGTCGGACACGTGTATGACGATGGGCCTCCGATTATGGCGGGGAATGGGCAGTATGGGTTCGGGCCCAGCCAGGTTATTCCCAGAGCGGCTAGGTACAGGTTCAAGATCAAGGCCTTACGGGTTTCGTCTCAGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SelR

Protein Analysis

296

Amino Acids

32.27

Weight (kDa)

9.49

Isoelectric Point (pI)

51.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At4g08330 PF24046 168 - 292 1.6e-38 At4g08330 beta-tent
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015322)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17705
fragaria_vesca FvH4_1g11071
malus_domestica MD02G1123500.v1.1 MD15G1237300.v1.1
prunus_persica Prupe.7G175100_v2.0.a1
pyrus_communis pycom02g09620
rosa_chinensis RchiOBHm_Chr2g0098341
rosa_laevigata RLG00000016792
rosa_multiflora Rmu_sc0003434.1_g000003
rosa_roxburghii Rroxscaffold_2G00144050
rosa_rugosa Rorug02G0072200
rosa_samantha Rh2AG119300 Rh2BG122500 Rh2CG124100 Rh2DG124200
rosa_wichuraiana Rw2G009350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 533
Acc36I ACCTGC 1 cut(s) 533
AccBSI CCGCTC 2 cut(s) 233, 836
AccI GTMKAC 1 cut(s) 519
AccII CGCG 4 cut(s) 261, 395, 452, 560
AclWI GGATC 4 cut(s) 330, 635, 697, 710
AcsI RAATTY 1 cut(s) 249
AcvI CACGTG 1 cut(s) 760
AdeI CACNNNGTG 1 cut(s) 534
AfaI GTAC 1 cut(s) 845
AfiI CCNNNNNNNGG 5 cut(s) 163, 245, 324, 559, 645
AflIII ACRYGT 2 cut(s) 757, 759
AgsI TTSAA 2 cut(s) 256, 853
AhdI GACNNNNNGTC 1 cut(s) 9
AjnI CCWGG 1 cut(s) 819
AjuI GAANNNNNNNTTGG 2 cut(s) 632, 664
AluBI AGCT 2 cut(s) 88, 358
AluI AGCT 2 cut(s) 88, 358
Alw21I GWGCWC 2 cut(s) 90, 360
Alw26I GTCTC 5 cut(s) 70, 172, 334, 677, 882
AlwI GGATC 4 cut(s) 330, 635, 697, 710
Ama87I CYCGRG 1 cut(s) 353
AoxI GGCC 7 cut(s) 144, 342, 561, 594, 773, 812, 861
ApaI GGGCCC 1 cut(s) 816
ApeKI GCWGC 1 cut(s) 78
ApoI RAATTY 1 cut(s) 249
ArsI GACNNNNNNTTYG 2 cut(s) 572, 604
AspLEI GCGC 1 cut(s) 261
AspS9I GGNCC 6 cut(s) 154, 343, 717, 773, 812, 813
AsuC2I CCSGG 1 cut(s) 341
AvaI CYCGRG 1 cut(s) 353
AvaII GGWCC 2 cut(s) 154, 717
BaeGI GKGCMC 1 cut(s) 816
BamHI GGATCC 1 cut(s) 702
BanII GRGCYC 3 cut(s) 90, 360, 816
BbrPI CACGTG 1 cut(s) 760
Bbv12I GWGCWC 2 cut(s) 90, 360
BbvCI CCTCAGC 1 cut(s) 217
BbvI GCAGC 1 cut(s) 65
BccI CCATC 2 cut(s) 13, 764
BceAI ACGGC 1 cut(s) 281
BciT130I CCWGG 1 cut(s) 821
BclI TGATCA 1 cut(s) 132
BcnI CCSGG 1 cut(s) 341
BcoDI GTCTC 5 cut(s) 70, 172, 334, 677, 882
BfaI CTAG 1 cut(s) 840
BfuAI ACCTGC 1 cut(s) 533
BisI GCNGC 7 cut(s) 79, 228, 231, 306, 561, 746, 837
BlsI GCNGC 7 cut(s) 80, 229, 232, 307, 562, 747, 838
Bme1390I CCNGG 2 cut(s) 341, 821
Bme18I GGWCC 2 cut(s) 154, 717
BmeRI GACNNNNNGTC 1 cut(s) 9
BmeT110I CYCGRG 1 cut(s) 353
BmgT120I GGNCC 6 cut(s) 154, 343, 717, 773, 812, 813
BmiI GGNNCC 2 cut(s) 704, 814
BmrFI CCNGG 2 cut(s) 341, 821
BmrI ACTGGG 1 cut(s) 340
BmsI GCATC 2 cut(s) 413, 506
BmuI ACTGGG 1 cut(s) 340
BplI GAGNNNNNCTC 4 cut(s) 77, 109, 347, 379
Bpu10I CCTNAGC 1 cut(s) 217
BpuEI CTTGAG 2 cut(s) 257, 364
BpuMI CCSGG 1 cut(s) 341
BsaAI YACGTR 1 cut(s) 760
BsaI GGTCTC 4 cut(s) 70, 172, 334, 677
BsaJI CCNNGG 4 cut(s) 141, 162, 318, 393
BsaWI WCCGGW 1 cut(s) 514
BsaXI ACNNNNNCTCC 6 cut(s) 101, 131, 197, 227, 421, 451
Bsc4I CCNNNNNNNGG 5 cut(s) 163, 245, 324, 559, 645
Bse118I RCCGGY 1 cut(s) 596
Bse1I ACTGG 1 cut(s) 346
BseBI CCWGG 1 cut(s) 821
BseDI CCNNGG 4 cut(s) 141, 162, 318, 393
BseGI GGATG 2 cut(s) 24, 743
BseLI CCNNNNNNNGG 5 cut(s) 163, 245, 324, 559, 645
BseMII CTCAG 2 cut(s) 81, 231
BseNI ACTGG 1 cut(s) 346
BseRI GAGGAG 7 cut(s) 164, 199, 202, 205, 225, 228, 307
BseSI GKGCMC 1 cut(s) 816
BseXI GCAGC 1 cut(s) 65
BseYI CCCAGC 1 cut(s) 815
BsgI GTGCAG 1 cut(s) 511
Bsh1236I CGCG 4 cut(s) 261, 395, 452, 560
Bsh1285I CGRYCG 1 cut(s) 399
BshFI GGCC 7 cut(s) 146, 344, 563, 596, 775, 814, 863
BsiEI CGRYCG 1 cut(s) 399
BsiHKAI GWGCWC 2 cut(s) 90, 360
BsiHKCI CYCGRG 1 cut(s) 353
BsiSI CCGG 7 cut(s) 152, 246, 333, 341, 515, 578, 597
BslFI GGGAC 1 cut(s) 275
BslI CCNNNNNNNGG 5 cut(s) 163, 245, 324, 559, 645
BsmAI GTCTC 5 cut(s) 70, 172, 334, 677, 882
BsmBI CGTCTC 1 cut(s) 882
BsmFI GGGAC 1 cut(s) 275
BsnI GGCC 7 cut(s) 146, 344, 563, 596, 775, 814, 863
Bso31I GGTCTC 4 cut(s) 70, 172, 334, 677
BsoBI CYCGRG 1 cut(s) 353
Bsp120I GGGCCC 1 cut(s) 812
Bsp1286I GDGCHC 3 cut(s) 90, 360, 816
Bsp143I GATC 7 cut(s) 132, 322, 627, 666, 702, 723, 855
BspANI GGCC 7 cut(s) 146, 344, 563, 596, 775, 814, 863
BspCNI CTCAG 2 cut(s) 80, 230
BspFNI CGCG 4 cut(s) 261, 395, 452, 560
BspLI GGNNCC 2 cut(s) 704, 814
BspMI ACCTGC 1 cut(s) 533
BspPI GGATC 4 cut(s) 330, 635, 697, 710
BspTNI GGTCTC 4 cut(s) 70, 172, 334, 677
BsrBI CCGCTC 2 cut(s) 233, 836
BsrFI RCCGGY 1 cut(s) 596
BsrI ACTGG 1 cut(s) 346
BssAI RCCGGY 1 cut(s) 596
BssECI CCNNGG 4 cut(s) 141, 162, 318, 393
BssMI GATC 7 cut(s) 132, 322, 627, 666, 702, 723, 855
BssT1I CCWWGG 2 cut(s) 141, 162
Bst2UI CCWGG 1 cut(s) 821
BstAPI GCANNNNNTGC 1 cut(s) 534
BstBAI YACGTR 1 cut(s) 760
BstC8I GCNNGC 1 cut(s) 598
BstDEI CTNAG 3 cut(s) 67, 217, 879
BstDSI CCRYGG 1 cut(s) 393
BstENI CCTNNNNNAGG 1 cut(s) 161
BstF5I GGATG 2 cut(s) 24, 743
BstFNI CGCG 4 cut(s) 261, 395, 452, 560
BstHHI GCGC 1 cut(s) 261
BstKTI GATC 7 cut(s) 135, 325, 630, 669, 705, 726, 858
BstMAI GTCTC 5 cut(s) 70, 172, 334, 677, 882
BstMBI GATC 7 cut(s) 132, 322, 627, 666, 702, 723, 855
BstMCI CGRYCG 1 cut(s) 399
BstMWI GCNNNNNNNGC 7 cut(s) 49, 227, 265, 274, 302, 401, 534
BstNI CCWGG 1 cut(s) 821
BstSCI CCNGG 2 cut(s) 339, 819
BstSLI GKGCMC 1 cut(s) 816
BstUI CGCG 4 cut(s) 261, 395, 452, 560
BstV1I GCAGC 1 cut(s) 65
BstX2I RGATCY 1 cut(s) 702
BstYI RGATCY 1 cut(s) 702
BsuRI GGCC 7 cut(s) 146, 344, 563, 596, 775, 814, 863
BtgI CCRYGG 1 cut(s) 393
BtsCI GGATG 2 cut(s) 24, 743
BtsI GCAGTG 1 cut(s) 440
BtsIMutI CAGTG 2 cut(s) 353, 440
BveI ACCTGC 1 cut(s) 533
Cac8I GCNNGC 1 cut(s) 598
CfoI GCGC 1 cut(s) 261
Cfr10I RCCGGY 1 cut(s) 596
Cfr13I GGNCC 6 cut(s) 154, 343, 717, 773, 812, 813
Cfr42I CCGCGG 1 cut(s) 396
Csp6I GTAC 1 cut(s) 844
CspCI CAANNNNNGTGG 2 cut(s) 721, 756
CviAII CATG 1 cut(s) 670
CviQI GTAC 1 cut(s) 844
DdeI CTNAG 3 cut(s) 67, 217, 879
DpnI GATC 7 cut(s) 134, 324, 629, 668, 704, 725, 857
DpnII GATC 7 cut(s) 132, 322, 627, 666, 702, 723, 855
DraIII CACNNNGTG 1 cut(s) 534
DriI GACNNNNNGTC 1 cut(s) 9
Eam1105I GACNNNNNGTC 1 cut(s) 9
EciI GGCGGA 2 cut(s) 39, 214
Ecl136II GAGCTC 2 cut(s) 88, 358
Eco130I CCWWGG 2 cut(s) 141, 162
Eco147I AGGCCT 1 cut(s) 863
Eco24I GRGCYC 3 cut(s) 90, 360, 816
Eco31I GGTCTC 4 cut(s) 70, 172, 334, 677
Eco47I GGWCC 2 cut(s) 154, 717
Eco53kI GAGCTC 2 cut(s) 88, 358
Eco72I CACGTG 1 cut(s) 760
Eco88I CYCGRG 1 cut(s) 353
EcoICRI GAGCTC 2 cut(s) 88, 358
EcoNI CCTNNNNNAGG 1 cut(s) 161
EcoRII CCWGG 1 cut(s) 819
EcoT14I CCWWGG 2 cut(s) 141, 162
EcoT38I GRGCYC 3 cut(s) 90, 360, 816
ErhI CCWWGG 2 cut(s) 141, 162
Esp3I CGTCTC 1 cut(s) 882
FaeI CATG 1 cut(s) 673
FaiI YATR 4 cut(s) 671, 765, 785, 804
FaqI GGGAC 1 cut(s) 275
FatI CATG 1 cut(s) 669
FauI CCCGC 5 cut(s) 208, 250, 301, 582, 781
FbaI TGATCA 1 cut(s) 132
FblI GTMKAC 1 cut(s) 519
Fnu4HI GCNGC 7 cut(s) 79, 228, 231, 306, 561, 746, 837
FokI GGATG 2 cut(s) 31, 750
FriOI GRGCYC 3 cut(s) 90, 360, 816
Fsp4HI GCNGC 7 cut(s) 79, 228, 231, 306, 561, 746, 837
FspBI CTAG 1 cut(s) 840
GlaI GCGC 1 cut(s) 260
GluI GCNGC 7 cut(s) 79, 228, 231, 306, 561, 746, 837
GsaI CCCAGC 1 cut(s) 819
HaeIII GGCC 7 cut(s) 146, 344, 563, 596, 775, 814, 863
HapII CCGG 7 cut(s) 152, 246, 333, 341, 515, 578, 597
HhaI GCGC 1 cut(s) 261
Hin1II CATG 1 cut(s) 673
Hin6I GCGC 1 cut(s) 259
HinP1I GCGC 1 cut(s) 259
HincII GTYRAC 1 cut(s) 429
HindII GTYRAC 1 cut(s) 429
HinfI GANTC 5 cut(s) 7, 46, 58, 206, 368
HpaII CCGG 7 cut(s) 152, 246, 333, 341, 515, 578, 597
Hpy166II GTNNAC 3 cut(s) 429, 520, 586
Hpy188I TCNGA 9 cut(s) 15, 85, 132, 322, 367, 401, 755, 780, 882
Hpy188III TCNNGA 3 cut(s) 32, 652, 853
Hpy8I GTNNAC 3 cut(s) 429, 520, 586
Hpy99I CGWCG 4 cut(s) 15, 77, 424, 427
HpyAV CCTTC 4 cut(s) 106, 192, 649, 685
HpyCH4IV ACGT 2 cut(s) 582, 759
HpyCH4V TGCA 3 cut(s) 497, 528, 732
HpyF10VI GCNNNNNNNGC 7 cut(s) 49, 227, 265, 274, 302, 401, 534
HpyF3I CTNAG 3 cut(s) 67, 217, 879
HpySE526I ACGT 2 cut(s) 582, 759
Hsp92II CATG 1 cut(s) 673
HspAI GCGC 1 cut(s) 259
KroI GCCGGC 1 cut(s) 596
KroNI GCCGGC 1 cut(s) 598
Ksp22I TGATCA 1 cut(s) 132
KspI CCGCGG 1 cut(s) 396
Kzo9I GATC 7 cut(s) 132, 322, 627, 666, 702, 723, 855
LmnI GCTCC 6 cut(s) 85, 93, 238, 368, 401, 539
Lsp1109I GCAGC 1 cut(s) 65
LweI GCATC 2 cut(s) 413, 506
MaeI CTAG 1 cut(s) 840
MaeII ACGT 2 cut(s) 582, 759
MalI GATC 7 cut(s) 134, 324, 629, 668, 704, 725, 857
MbiI CCGCTC 2 cut(s) 233, 836
MboI GATC 7 cut(s) 132, 322, 627, 666, 702, 723, 855
MboII GAAGA 5 cut(s) 35, 492, 495, 498, 501
MflI RGATCY 1 cut(s) 702
MhlI GDGCHC 3 cut(s) 90, 360, 816
MluCI AATT 2 cut(s) 249, 409
MlyI GAGTC 3 cut(s) 55, 67, 200
MmeI TCCRAC 3 cut(s) 379, 730, 733
MroNI GCCGGC 1 cut(s) 596
MseI TTAA 1 cut(s) 886
MslI CAYNNNNRTG 1 cut(s) 762
MspA1I CMGCKG 1 cut(s) 395
MspI CCGG 7 cut(s) 152, 246, 333, 341, 515, 578, 597
MspR9I CCNGG 2 cut(s) 341, 821
MvaI CCWGG 1 cut(s) 821
MvnI CGCG 4 cut(s) 261, 395, 452, 560
MwoI GCNNNNNNNGC 7 cut(s) 49, 227, 265, 274, 302, 401, 534
NaeI GCCGGC 1 cut(s) 598
NciI CCSGG 1 cut(s) 341
NdeII GATC 7 cut(s) 132, 322, 627, 666, 702, 723, 855
NgoMIV GCCGGC 1 cut(s) 596
NlaIII CATG 1 cut(s) 673
NlaIV GGNNCC 2 cut(s) 704, 814
PaeR7I CTCGAG 1 cut(s) 353
PaqCI CACCTGC 1 cut(s) 533
PceI AGGCCT 1 cut(s) 863
PcsI WCGNNNNNNNCGW 2 cut(s) 588, 765
PdiI GCCGGC 1 cut(s) 598
PfeI GAWTC 1 cut(s) 368
PkrI GCNGC 7 cut(s) 80, 229, 232, 307, 562, 747, 838
PleI GAGTC 3 cut(s) 54, 66, 200
PmaCI CACGTG 1 cut(s) 760
PmlI CACGTG 1 cut(s) 760
PpsI GAGTC 3 cut(s) 54, 66, 200
Ppu21I YACGTR 1 cut(s) 760
Psp124BI GAGCTC 2 cut(s) 90, 360
Psp6I CCWGG 1 cut(s) 819
PspCI CACGTG 1 cut(s) 760
PspFI CCCAGC 1 cut(s) 815
PspGI CCWGG 1 cut(s) 819
PspN4I GGNNCC 2 cut(s) 704, 814
PspOMI GGGCCC 1 cut(s) 812
PspPI GGNCC 6 cut(s) 154, 343, 717, 773, 812, 813
PspXI VCTCGAGB 1 cut(s) 353
PsuI RGATCY 1 cut(s) 702
RsaI GTAC 1 cut(s) 845
RsaNI GTAC 1 cut(s) 844
RseI CAYNNNNRTG 1 cut(s) 762
SacI GAGCTC 2 cut(s) 90, 360
SacII CCGCGG 1 cut(s) 396
SaqAI TTAA 1 cut(s) 886
SatI GCNGC 7 cut(s) 79, 228, 231, 306, 561, 746, 837
Sau3AI GATC 7 cut(s) 132, 322, 627, 666, 702, 723, 855
Sau96I GGNCC 6 cut(s) 154, 343, 717, 773, 812, 813
SchI GAGTC 3 cut(s) 55, 67, 200
ScrFI CCNGG 2 cut(s) 341, 821
SduI GDGCHC 3 cut(s) 90, 360, 816
SfaNI GCATC 2 cut(s) 413, 506
Sfr274I CTCGAG 1 cut(s) 353
Sfr303I CCGCGG 1 cut(s) 396
SgrBI CCGCGG 1 cut(s) 396
SinI GGWCC 2 cut(s) 154, 717
SlaI CTCGAG 1 cut(s) 353
SmiMI CAYNNNNRTG 1 cut(s) 762
SmlI CTYRAG 3 cut(s) 272, 353, 379
SmoI CTYRAG 3 cut(s) 272, 353, 379
Sse9I AATT 2 cut(s) 249, 409
SseBI AGGCCT 1 cut(s) 863
SspMI CTAG 1 cut(s) 840
SstI GAGCTC 2 cut(s) 90, 360
StuI AGGCCT 1 cut(s) 863
StyD4I CCNGG 2 cut(s) 339, 819
StyI CCWWGG 2 cut(s) 141, 162
TaiI ACGT 2 cut(s) 585, 762
TaqI TCGA 6 cut(s) 123, 354, 371, 591, 630, 651
TasI AATT 2 cut(s) 249, 409
TauI GCSGC 6 cut(s) 230, 233, 308, 563, 748, 839
TfiI GAWTC 1 cut(s) 368
Tru1I TTAA 1 cut(s) 886
Tru9I TTAA 1 cut(s) 886
TscAI CASTG 2 cut(s) 353, 447
TseI GCWGC 1 cut(s) 78
TspDTI ATGAA 1 cut(s) 88
TspGWI ACGGA 3 cut(s) 545, 724, 750
TspRI CASTG 2 cut(s) 353, 447
VpaK11BI GGWCC 2 cut(s) 154, 717
XagI CCTNNNNNAGG 1 cut(s) 161
XapI RAATTY 1 cut(s) 249
XhoI CTCGAG 1 cut(s) 353
XmiI GTMKAC 1 cut(s) 519
XspI CTAG 1 cut(s) 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.