MD15G1237300.v1.1

protein At4g08330, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0015322
Physical Location & Seq
Forward (+)
19530336 .. 19530926
591 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1237300.v1.1.491

Sequence Viewer

Length: 504 bp
ATGCTTGAATCAACCAGCCATAGAATCCTCCATCATGGACATCCAAAACCACCAGCAATGGCCTCTTCCGATTCGACAATCTACACCTGCACGGAGTGCCGAGCCAACCTGAACCTTACCGCTGCGAATCTCTATCCGCCGGACTTCTTCTTCGAGGCCGGAAACAAGGGAACGGTGTCGTTTGCGGCGGTCGACGCAACCAAGTTCCGGTTCGACAAGGAGGACAAGATCAGACCGTTCTTCGAGACTAGAAACTACTGGGGGATCCAATGGACGAGGACGAAGATCAAGTGCAATGGCTGCCAGAAATTTTTTATTGAAACCGAATACGCCATCCAAAAATCTTTTAACTGTTGCGGACGGCTCGTCGGATACGTGTACGGCGATGGGCCGCTCATGATTGACAGTCCCGGTCAGTTTCACATGGGACCCAGCCAGGTGGTCCCTCGAGCTGCCCGGTATCGATTCAAAACGAAAGCCCTTCGCGTTTCGTCTGGCACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SelR

Protein Analysis

168

Amino Acids

18.91

Weight (kDa)

9.3

Isoelectric Point (pI)

28.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At4g08330 PF24046 20 - 103 3.3e-23 At4g08330 beta-tent
At4g08330 PF24046 118 - 164 6.5e-09 At4g08330 beta-tent
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015322)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17705
fragaria_vesca FvH4_1g11071
malus_domestica MD02G1123500.v1.1 MD15G1237300.v1.1
prunus_persica Prupe.7G175100_v2.0.a1
pyrus_communis pycom02g09620
rosa_chinensis RchiOBHm_Chr2g0098341
rosa_laevigata RLG00000016792
rosa_multiflora Rmu_sc0003434.1_g000003
rosa_roxburghii Rroxscaffold_2G00144050
rosa_rugosa Rorug02G0072200
rosa_samantha Rh2AG119300 Rh2BG122500 Rh2CG124100 Rh2DG124200
rosa_wichuraiana Rw2G009350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 95
Acc36I ACCTGC 1 cut(s) 95
AccBSI CCGCTC 1 cut(s) 394
AccI GTMKAC 1 cut(s) 192
AccII CGCG 1 cut(s) 486
AciI CCGC 6 cut(s) 120, 137, 185, 188, 357, 392
AclWI GGATC 2 cut(s) 259, 272
AcsI RAATTY 1 cut(s) 308
AdeI CACNNNGTG 1 cut(s) 96
AfaI GTAC 1 cut(s) 380
AfiI CCNNNNNNNGG 1 cut(s) 207
AflIII ACRYGT 1 cut(s) 375
AgsI TTSAA 3 cut(s) 8, 320, 469
AhdI GACNNNNNGTC 1 cut(s) 365
AjnI CCWGG 1 cut(s) 435
AjuI GAANNNNNNNTTGG 2 cut(s) 194, 226
AluBI AGCT 1 cut(s) 452
AluI AGCT 1 cut(s) 452
Alw26I GTCTC 1 cut(s) 239
AlwI GGATC 2 cut(s) 259, 272
Ama87I CYCGRG 1 cut(s) 447
AoxI GGCC 3 cut(s) 60, 156, 389
ApeKI GCWGC 3 cut(s) 122, 300, 452
ApoI RAATTY 1 cut(s) 308
ArsI GACNNNNNNTTYG 2 cut(s) 134, 166
AspS9I GGNCC 3 cut(s) 389, 428, 442
AsuC2I CCSGG 2 cut(s) 411, 457
AvaI CYCGRG 1 cut(s) 447
AvaII GGWCC 2 cut(s) 428, 442
BamHI GGATCC 1 cut(s) 264
BbvI GCAGC 3 cut(s) 109, 287, 439
BccI CCATC 3 cut(s) 39, 341, 380
BceAI ACGGC 2 cut(s) 377, 397
BciT130I CCWGG 1 cut(s) 437
BciVI GTATCC 1 cut(s) 365
BcnI CCSGG 2 cut(s) 411, 457
BcoDI GTCTC 1 cut(s) 239
BfaI CTAG 1 cut(s) 249
BfuAI ACCTGC 1 cut(s) 95
BfuI GTATCC 1 cut(s) 365
BisI GCNGC 5 cut(s) 123, 186, 301, 392, 453
BlsI GCNGC 5 cut(s) 124, 187, 302, 393, 454
Bme1390I CCNGG 3 cut(s) 411, 437, 457
Bme18I GGWCC 2 cut(s) 428, 442
BmeRI GACNNNNNGTC 1 cut(s) 365
BmeT110I CYCGRG 1 cut(s) 447
BmgT120I GGNCC 3 cut(s) 389, 428, 442
BmiI GGNNCC 4 cut(s) 266, 429, 430, 444
BmrFI CCNGG 3 cut(s) 411, 437, 457
BmrI ACTGGG 1 cut(s) 268
BmuI ACTGGG 1 cut(s) 268
BpuMI CCSGG 2 cut(s) 411, 457
Bsa29I ATCGAT 1 cut(s) 463
BsaAI YACGTR 1 cut(s) 376
BsaWI WCCGGW 1 cut(s) 207
Bsc4I CCNNNNNNNGG 1 cut(s) 207
Bse1I ACTGG 1 cut(s) 263
Bse3DI GCAATG 2 cut(s) 63, 301
BseBI CCWGG 1 cut(s) 437
BseCI ATCGAT 1 cut(s) 463
BseGI GGATG 2 cut(s) 40, 333
BseLI CCNNNNNNNGG 1 cut(s) 207
BseMI GCAATG 2 cut(s) 63, 301
BseNI ACTGG 1 cut(s) 263
BseXI GCAGC 3 cut(s) 109, 287, 439
BseYI CCCAGC 1 cut(s) 431
BsgI GTGCAG 1 cut(s) 73
Bsh1236I CGCG 1 cut(s) 486
Bsh1285I CGRYCG 1 cut(s) 192
BshFI GGCC 3 cut(s) 62, 158, 391
BshVI ATCGAT 1 cut(s) 463
BsiEI CGRYCG 1 cut(s) 192
BsiHKCI CYCGRG 1 cut(s) 447
BsiSI CCGG 5 cut(s) 140, 159, 208, 411, 457
BslFI GGGAC 3 cut(s) 393, 428, 441
BslI CCNNNNNNNGG 1 cut(s) 207
BsmAI GTCTC 1 cut(s) 239
BsmFI GGGAC 3 cut(s) 393, 428, 441
BsnI GGCC 3 cut(s) 62, 158, 391
BsoBI CYCGRG 1 cut(s) 447
Bsp143I GATC 3 cut(s) 228, 264, 285
BspACI CCGC 6 cut(s) 120, 137, 185, 188, 357, 392
BspANI GGCC 3 cut(s) 62, 158, 391
BspDI ATCGAT 1 cut(s) 463
BspFNI CGCG 1 cut(s) 486
BspHI TCATGA 1 cut(s) 396
BspLI GGNNCC 4 cut(s) 266, 429, 430, 444
BspMI ACCTGC 1 cut(s) 95
BspPI GGATC 2 cut(s) 259, 272
BsrBI CCGCTC 1 cut(s) 394
BsrDI GCAATG 2 cut(s) 63, 301
BsrI ACTGG 1 cut(s) 263
BssMI GATC 3 cut(s) 228, 264, 285
Bst2UI CCWGG 1 cut(s) 437
Bst4CI ACNGT 4 cut(s) 175, 237, 353, 407
Bst6I CTCTTC 1 cut(s) 70
BstAPI GCANNNNNTGC 2 cut(s) 96, 300
BstBAI YACGTR 1 cut(s) 376
BstDEI CTNAG 1 cut(s) 501
BstF5I GGATG 2 cut(s) 40, 333
BstFNI CGCG 1 cut(s) 486
BstKTI GATC 3 cut(s) 231, 267, 288
BstMAI GTCTC 1 cut(s) 239
BstMBI GATC 3 cut(s) 228, 264, 285
BstMCI CGRYCG 1 cut(s) 192
BstMWI GCNNNNNNNGC 3 cut(s) 96, 194, 300
BstNI CCWGG 1 cut(s) 437
BstSCI CCNGG 3 cut(s) 409, 435, 455
BstUI CGCG 1 cut(s) 486
BstV1I GCAGC 3 cut(s) 109, 287, 439
BstX2I RGATCY 1 cut(s) 264
BstXI CCANNNNNNTGG 1 cut(s) 439
BstYI RGATCY 1 cut(s) 264
Bsu15I ATCGAT 1 cut(s) 463
BsuI GTATCC 1 cut(s) 365
BsuRI GGCC 3 cut(s) 62, 158, 391
BsuTUI ATCGAT 1 cut(s) 463
BtgZI GCGATG 1 cut(s) 399
BtsCI GGATG 2 cut(s) 40, 333
BveI ACCTGC 1 cut(s) 95
CciI TCATGA 1 cut(s) 396
Cfr13I GGNCC 3 cut(s) 389, 428, 442
ClaI ATCGAT 1 cut(s) 463
CseI GACGC 1 cut(s) 203
Csp6I GTAC 1 cut(s) 379
CviAII CATG 3 cut(s) 35, 397, 424
CviQI GTAC 1 cut(s) 379
DdeI CTNAG 1 cut(s) 501
DpnI GATC 3 cut(s) 230, 266, 287
DpnII GATC 3 cut(s) 228, 264, 285
DraIII CACNNNGTG 1 cut(s) 96
DriI GACNNNNNGTC 1 cut(s) 365
Eam1104I CTCTTC 1 cut(s) 70
Eam1105I GACNNNNNGTC 1 cut(s) 365
EarI CTCTTC 1 cut(s) 70
EciI GGCGGA 1 cut(s) 126
Eco47I GGWCC 2 cut(s) 428, 442
Eco88I CYCGRG 1 cut(s) 447
EcoO109I RGGNCCY 1 cut(s) 428
EcoRII CCWGG 1 cut(s) 435
FaeI CATG 3 cut(s) 38, 400, 427
FaiI YATR 4 cut(s) 21, 36, 398, 425
FaqI GGGAC 3 cut(s) 393, 428, 441
FatI CATG 3 cut(s) 34, 396, 423
FblI GTMKAC 1 cut(s) 192
Fnu4HI GCNGC 5 cut(s) 123, 186, 301, 392, 453
FokI GGATG 2 cut(s) 27, 320
Fsp4HI GCNGC 5 cut(s) 123, 186, 301, 392, 453
FspBI CTAG 1 cut(s) 249
GluI GCNGC 5 cut(s) 123, 186, 301, 392, 453
GsaI CCCAGC 1 cut(s) 435
HaeIII GGCC 3 cut(s) 62, 158, 391
HapII CCGG 5 cut(s) 140, 159, 208, 411, 457
HgaI GACGC 1 cut(s) 203
Hin1II CATG 3 cut(s) 38, 400, 427
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HinfI GANTC 5 cut(s) 8, 24, 71, 127, 465
HpaII CCGG 5 cut(s) 140, 159, 208, 411, 457
Hpy166II GTNNAC 2 cut(s) 193, 379
Hpy188I TCNGA 3 cut(s) 70, 233, 371
Hpy188III TCNNGA 2 cut(s) 244, 397
Hpy8I GTNNAC 2 cut(s) 193, 379
Hpy99I CGWCG 2 cut(s) 197, 371
HpyAV CCTTC 1 cut(s) 491
HpyCH4III ACNGT 4 cut(s) 175, 237, 353, 407
HpyCH4IV ACGT 1 cut(s) 375
HpyCH4V TGCA 2 cut(s) 90, 294
HpyF10VI GCNNNNNNNGC 3 cut(s) 96, 194, 300
HpyF3I CTNAG 1 cut(s) 501
HpySE526I ACGT 1 cut(s) 375
Hsp92II CATG 3 cut(s) 38, 400, 427
KflI GGGWCCC 1 cut(s) 428
Kzo9I GATC 3 cut(s) 228, 264, 285
Lsp1109I GCAGC 3 cut(s) 109, 287, 439
MaeI CTAG 1 cut(s) 249
MaeII ACGT 1 cut(s) 375
MalI GATC 3 cut(s) 230, 266, 287
MbiI CCGCTC 1 cut(s) 394
MboI GATC 3 cut(s) 228, 264, 285
MboII GAAGA 5 cut(s) 57, 139, 142, 232, 295
MflI RGATCY 1 cut(s) 264
MluCI AATT 1 cut(s) 308
MmeI TCCRAC 1 cut(s) 349
MnlI CCTC 6 cut(s) 38, 73, 148, 214, 270, 456
MseI TTAA 1 cut(s) 348
MspA1I CMGCKG 1 cut(s) 122
MspI CCGG 5 cut(s) 140, 159, 208, 411, 457
MspR9I CCNGG 3 cut(s) 411, 437, 457
MvaI CCWGG 1 cut(s) 437
MvnI CGCG 1 cut(s) 486
MwoI GCNNNNNNNGC 3 cut(s) 96, 194, 300
NciI CCSGG 2 cut(s) 411, 457
NdeII GATC 3 cut(s) 228, 264, 285
NlaIII CATG 3 cut(s) 38, 400, 427
NlaIV GGNNCC 4 cut(s) 266, 429, 430, 444
NmeAIII GCCGAG 1 cut(s) 125
PaeR7I CTCGAG 1 cut(s) 447
PagI TCATGA 1 cut(s) 396
PaqCI CACCTGC 1 cut(s) 95
PcsI WCGNNNNNNNCGW 2 cut(s) 372, 381
PfeI GAWTC 5 cut(s) 8, 24, 71, 127, 465
PkrI GCNGC 5 cut(s) 124, 187, 302, 393, 454
Ppu21I YACGTR 1 cut(s) 376
PpuMI RGGWCCY 1 cut(s) 428
Psp5II RGGWCCY 1 cut(s) 428
Psp6I CCWGG 1 cut(s) 435
PspFI CCCAGC 1 cut(s) 431
PspGI CCWGG 1 cut(s) 435
PspN4I GGNNCC 4 cut(s) 266, 429, 430, 444
PspPI GGNCC 3 cut(s) 389, 428, 442
PspPPI RGGWCCY 1 cut(s) 428
PspXI VCTCGAGB 1 cut(s) 447
PsuI RGATCY 1 cut(s) 264
RsaI GTAC 1 cut(s) 380
RsaNI GTAC 1 cut(s) 379
SalI GTCGAC 1 cut(s) 191
SaqAI TTAA 1 cut(s) 348
SatI GCNGC 5 cut(s) 123, 186, 301, 392, 453
Sau3AI GATC 3 cut(s) 228, 264, 285
Sau96I GGNCC 3 cut(s) 389, 428, 442
ScrFI CCNGG 3 cut(s) 411, 437, 457
SetI ASST 6 cut(s) 89, 111, 117, 378, 441, 454
Sfr274I CTCGAG 1 cut(s) 447
SinI GGWCC 2 cut(s) 428, 442
SlaI CTCGAG 1 cut(s) 447
SmlI CTYRAG 1 cut(s) 447
SmoI CTYRAG 1 cut(s) 447
Sse9I AATT 1 cut(s) 308
SsiI CCGC 6 cut(s) 120, 137, 185, 188, 357, 392
SspMI CTAG 1 cut(s) 249
StyD4I CCNGG 3 cut(s) 409, 435, 455
TaaI ACNGT 4 cut(s) 175, 237, 353, 407
TaiI ACGT 1 cut(s) 378
TaqI TCGA 7 cut(s) 74, 153, 192, 213, 243, 448, 463
TasI AATT 1 cut(s) 308
TauI GCSGC 2 cut(s) 188, 394
TfiI GAWTC 5 cut(s) 8, 24, 71, 127, 465
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TseI GCWGC 3 cut(s) 122, 300, 452
TspGWI ACGGA 1 cut(s) 107
VpaK11BI GGWCC 2 cut(s) 428, 442
XapI RAATTY 1 cut(s) 308
XhoI CTCGAG 1 cut(s) 447
XmiI GTMKAC 1 cut(s) 192
XspI CTAG 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.