FvH4_1g11071

protein At4g08330, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0015322
Physical Location & Seq
Forward (+)
6045753 .. 6046797
1045 bp
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UTR
Exon/CDS
Intron
FvH4_1g11071.t1

Sequence Viewer

Length: 399 bp
ATGTCTTCAGCTTATTCTTCTTCATCGGTCTACACCTGCACGGAGTGCGGAGCCAACCTGAACCTGAACGCCGCCTATCTCTACCCGCCGGACGTTTACTTCGAGGCCGGGAACAAGAACACGCTGTCGTTTTCGGGCATCGACACGACCAAGTTCCGGTTCGAGAAAGAGGACAAGATCAGGCCCTTCTGGGAGACCCGAAACTATTGGGGGATCCAACGGACGAGGACCAAGATCAAGTGCAACGGGTGCGGGCGGCTGGTCGGACACGTGTACGATGATGGGCCGCCGATGATGGAGGGGAACGGGCAGTTTGGGTTTGGGCCCAGCCAGGTTATTCCCAGGGCGGCTAGGTACCGGTTCAAGATCAAGGCCTTAAGGGTTGCTTCTCAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SelR

Protein Analysis

133

Amino Acids

14.92

Weight (kDa)

9.39

Isoelectric Point (pI)

22.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At4g08330 PF24046 6 - 128 2.4e-40 At4g08330 beta-tent
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015322)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17705
fragaria_vesca FvH4_1g11071
malus_domestica MD02G1123500.v1.1 MD15G1237300.v1.1
prunus_persica Prupe.7G175100_v2.0.a1
pyrus_communis pycom02g09620
rosa_chinensis RchiOBHm_Chr2g0098341
rosa_laevigata RLG00000016792
rosa_multiflora Rmu_sc0003434.1_g000003
rosa_roxburghii Rroxscaffold_2G00144050
rosa_rugosa Rorug02G0072200
rosa_samantha Rh2AG119300 Rh2BG122500 Rh2CG124100 Rh2DG124200
rosa_wichuraiana Rw2G009350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 44
Acc36I ACCTGC 1 cut(s) 44
Acc65I GGTACC 1 cut(s) 354
AccB1I GGYRCC 1 cut(s) 354
AccI GTMKAC 1 cut(s) 30
AciI CCGC 7 cut(s) 48, 72, 86, 252, 256, 287, 347
AclWI GGATC 2 cut(s) 208, 221
AcvI CACGTG 1 cut(s) 271
AdeI CACNNNGTG 1 cut(s) 45
AfaI GTAC 2 cut(s) 275, 356
AfiI CCNNNNNNNGG 1 cut(s) 156
AflII CTTAAG 1 cut(s) 376
AflIII ACRYGT 2 cut(s) 268, 270
AgeI ACCGGT 1 cut(s) 357
AgsI TTSAA 1 cut(s) 364
AjnI CCWGG 2 cut(s) 330, 341
AjuI GAANNNNNNNTTGG 2 cut(s) 143, 175
AluBI AGCT 1 cut(s) 11
AluI AGCT 1 cut(s) 11
Alw26I GTCTC 1 cut(s) 188
AlwI GGATC 2 cut(s) 208, 221
AoxI GGCC 5 cut(s) 105, 182, 284, 323, 372
ApaI GGGCCC 1 cut(s) 327
ArsI GACNNNNNNTTYG 2 cut(s) 83, 115
AsiGI ACCGGT 1 cut(s) 357
Asp718I GGTACC 1 cut(s) 354
AspS9I GGNCC 5 cut(s) 183, 228, 284, 323, 324
AsuC2I CCSGG 1 cut(s) 109
AvaII GGWCC 1 cut(s) 228
BaeGI GKGCMC 1 cut(s) 327
BamHI GGATCC 1 cut(s) 213
BanI GGYRCC 1 cut(s) 354
BanII GRGCYC 1 cut(s) 327
BbrPI CACGTG 1 cut(s) 271
BccI CCATC 2 cut(s) 275, 289
BciT130I CCWGG 2 cut(s) 332, 343
BcnI CCSGG 1 cut(s) 109
BcoDI GTCTC 1 cut(s) 188
BfaI CTAG 1 cut(s) 351
BfrI CTTAAG 1 cut(s) 376
BfuAI ACCTGC 1 cut(s) 44
BisI GCNGC 4 cut(s) 72, 257, 287, 348
BlsI GCNGC 4 cut(s) 73, 258, 288, 349
Bme1390I CCNGG 3 cut(s) 109, 332, 343
Bme18I GGWCC 1 cut(s) 228
BmgT120I GGNCC 5 cut(s) 183, 228, 284, 323, 324
BmiI GGNNCC 4 cut(s) 52, 215, 325, 356
BmrFI CCNGG 3 cut(s) 109, 332, 343
BmsI GCATC 1 cut(s) 147
BpuMI CCSGG 1 cut(s) 109
BsaAI YACGTR 1 cut(s) 271
BsaI GGTCTC 1 cut(s) 188
BsaJI CCNNGG 2 cut(s) 341, 342
BsaWI WCCGGW 2 cut(s) 156, 357
Bsc4I CCNNNNNNNGG 1 cut(s) 156
Bse118I RCCGGY 1 cut(s) 357
BseBI CCWGG 2 cut(s) 332, 343
BseDI CCNNGG 2 cut(s) 341, 342
BseLI CCNNNNNNNGG 1 cut(s) 156
BseSI GKGCMC 1 cut(s) 327
BseYI CCCAGC 1 cut(s) 326
BsgI GTGCAG 1 cut(s) 22
BshFI GGCC 5 cut(s) 107, 184, 286, 325, 374
BshNI GGYRCC 1 cut(s) 354
BshTI ACCGGT 1 cut(s) 357
BsiSI CCGG 4 cut(s) 89, 108, 157, 358
BslI CCNNNNNNNGG 1 cut(s) 156
BsmAI GTCTC 1 cut(s) 188
BsnI GGCC 5 cut(s) 107, 184, 286, 325, 374
Bso31I GGTCTC 1 cut(s) 188
Bsp120I GGGCCC 1 cut(s) 323
Bsp1286I GDGCHC 1 cut(s) 327
Bsp143I GATC 4 cut(s) 177, 213, 234, 366
BspACI CCGC 7 cut(s) 48, 72, 86, 252, 256, 287, 347
BspANI GGCC 5 cut(s) 107, 184, 286, 325, 374
BspLI GGNNCC 4 cut(s) 52, 215, 325, 356
BspMI ACCTGC 1 cut(s) 44
BspPI GGATC 2 cut(s) 208, 221
BspT107I GGYRCC 1 cut(s) 354
BspTI CTTAAG 1 cut(s) 376
BspTNI GGTCTC 1 cut(s) 188
BsrFI RCCGGY 1 cut(s) 357
BssAI RCCGGY 1 cut(s) 357
BssECI CCNNGG 2 cut(s) 341, 342
BssMI GATC 4 cut(s) 177, 213, 234, 366
Bst2UI CCWGG 2 cut(s) 332, 343
BstAFI CTTAAG 1 cut(s) 376
BstAPI GCANNNNNTGC 2 cut(s) 45, 249
BstBAI YACGTR 1 cut(s) 271
BstC8I GCNNGC 1 cut(s) 254
BstKTI GATC 4 cut(s) 180, 216, 237, 369
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 4 cut(s) 177, 213, 234, 366
BstMWI GCNNNNNNNGC 2 cut(s) 45, 249
BstNI CCWGG 2 cut(s) 332, 343
BstSCI CCNGG 3 cut(s) 107, 330, 341
BstSLI GKGCMC 1 cut(s) 327
BstX2I RGATCY 1 cut(s) 213
BstYI RGATCY 1 cut(s) 213
BsuRI GGCC 5 cut(s) 107, 184, 286, 325, 374
BveI ACCTGC 1 cut(s) 44
Cac8I GCNNGC 1 cut(s) 254
Cfr10I RCCGGY 1 cut(s) 357
Cfr13I GGNCC 5 cut(s) 183, 228, 284, 323, 324
Csp6I GTAC 2 cut(s) 274, 355
CspAI ACCGGT 1 cut(s) 357
CviQI GTAC 2 cut(s) 274, 355
DpnI GATC 4 cut(s) 179, 215, 236, 368
DpnII GATC 4 cut(s) 177, 213, 234, 366
DraIII CACNNNGTG 1 cut(s) 45
Eco147I AGGCCT 1 cut(s) 374
Eco24I GRGCYC 1 cut(s) 327
Eco31I GGTCTC 1 cut(s) 188
Eco47I GGWCC 1 cut(s) 228
Eco72I CACGTG 1 cut(s) 271
EcoO109I RGGNCCY 1 cut(s) 183
EcoRII CCWGG 2 cut(s) 330, 341
EcoT38I GRGCYC 1 cut(s) 327
FalI AAGNNNNNCTT 1 cut(s) 370
FauI CCCGC 2 cut(s) 93, 245
FblI GTMKAC 1 cut(s) 30
Fnu4HI GCNGC 4 cut(s) 72, 257, 287, 348
FriOI GRGCYC 1 cut(s) 327
Fsp4HI GCNGC 4 cut(s) 72, 257, 287, 348
FspBI CTAG 1 cut(s) 351
GluI GCNGC 4 cut(s) 72, 257, 287, 348
GsaI CCCAGC 1 cut(s) 330
HaeIII GGCC 5 cut(s) 107, 184, 286, 325, 374
HapII CCGG 4 cut(s) 89, 108, 157, 358
HpaII CCGG 4 cut(s) 89, 108, 157, 358
Hpy166II GTNNAC 3 cut(s) 31, 97, 274
Hpy188I TCNGA 1 cut(s) 266
Hpy188III TCNNGA 2 cut(s) 163, 364
Hpy8I GTNNAC 3 cut(s) 31, 97, 274
HpyAV CCTTC 1 cut(s) 196
HpyCH4IV ACGT 2 cut(s) 93, 270
HpyCH4V TGCA 2 cut(s) 39, 243
HpyF10VI GCNNNNNNNGC 2 cut(s) 45, 249
HpySE526I ACGT 2 cut(s) 93, 270
KpnI GGTACC 1 cut(s) 358
Kzo9I GATC 4 cut(s) 177, 213, 234, 366
LmnI GCTCC 1 cut(s) 50
LweI GCATC 1 cut(s) 147
MaeI CTAG 1 cut(s) 351
MaeII ACGT 2 cut(s) 93, 270
MalI GATC 4 cut(s) 179, 215, 236, 368
MboI GATC 4 cut(s) 177, 213, 234, 366
MboII GAAGA 2 cut(s) 9, 12
MflI RGATCY 1 cut(s) 213
MhlI GDGCHC 1 cut(s) 327
MmeI TCCRAC 2 cut(s) 241, 244
MnlI CCTC 4 cut(s) 97, 163, 219, 292
MseI TTAA 1 cut(s) 377
MspCI CTTAAG 1 cut(s) 376
MspI CCGG 4 cut(s) 89, 108, 157, 358
MspR9I CCNGG 3 cut(s) 109, 332, 343
MvaI CCWGG 2 cut(s) 332, 343
MwoI GCNNNNNNNGC 2 cut(s) 45, 249
NciI CCSGG 1 cut(s) 109
NdeII GATC 4 cut(s) 177, 213, 234, 366
NlaIV GGNNCC 4 cut(s) 52, 215, 325, 356
PaqCI CACCTGC 1 cut(s) 44
PasI CCCWGGG 1 cut(s) 342
PceI AGGCCT 1 cut(s) 374
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PinAI ACCGGT 1 cut(s) 357
PkrI GCNGC 4 cut(s) 73, 258, 288, 349
PmaCI CACGTG 1 cut(s) 271
PmlI CACGTG 1 cut(s) 271
Ppu21I YACGTR 1 cut(s) 271
Psp6I CCWGG 2 cut(s) 330, 341
PspCI CACGTG 1 cut(s) 271
PspFI CCCAGC 1 cut(s) 326
PspGI CCWGG 2 cut(s) 330, 341
PspN4I GGNNCC 4 cut(s) 52, 215, 325, 356
PspOMI GGGCCC 1 cut(s) 323
PspPI GGNCC 5 cut(s) 183, 228, 284, 323, 324
PsuI RGATCY 1 cut(s) 213
RsaI GTAC 2 cut(s) 275, 356
RsaNI GTAC 2 cut(s) 274, 355
SaqAI TTAA 1 cut(s) 377
SatI GCNGC 4 cut(s) 72, 257, 287, 348
Sau3AI GATC 4 cut(s) 177, 213, 234, 366
Sau96I GGNCC 5 cut(s) 183, 228, 284, 323, 324
ScrFI CCNGG 3 cut(s) 109, 332, 343
SduI GDGCHC 1 cut(s) 327
SetI ASST 8 cut(s) 13, 38, 60, 66, 96, 273, 336, 356
SfaNI GCATC 1 cut(s) 147
SinI GGWCC 1 cut(s) 228
SmlI CTYRAG 1 cut(s) 376
SmoI CTYRAG 1 cut(s) 376
SseBI AGGCCT 1 cut(s) 374
SsiI CCGC 7 cut(s) 48, 72, 86, 252, 256, 287, 347
SspMI CTAG 1 cut(s) 351
StuI AGGCCT 1 cut(s) 374
StyD4I CCNGG 3 cut(s) 107, 330, 341
TaiI ACGT 2 cut(s) 96, 273
TaqI TCGA 3 cut(s) 102, 141, 162
TaqII GACCGA 1 cut(s) 16
TauI GCSGC 4 cut(s) 74, 259, 289, 350
Tru1I TTAA 1 cut(s) 377
Tru9I TTAA 1 cut(s) 377
TspDTI ATGAA 1 cut(s) 12
TspGWI ACGGA 2 cut(s) 56, 235
Vha464I CTTAAG 1 cut(s) 376
VpaK11BI GGWCC 1 cut(s) 228
XmiI GTMKAC 1 cut(s) 30
XspI CTAG 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.