Rorug02G0072200

protein At4g08330, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0015322
Physical Location & Seq
Forward (+)
5687978 .. 5688685
708 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0072200.1

Sequence Viewer

Length: 708 bp
ATGAATAAAAACAAGACAATTAAGTCTCTCAATCGTGTTATACTTAACACTACAGAGACATCCTTCGTTGTTGGACAAATCCTTGTAAAGGCAGAAATTGATCTTAAAATCAACAGTGAGGGGTTTGTGTTGAAGGAGACTCAAAGGAATGCTGTGGAAAGTCAGCAGACTGATGGTTCTAAAGTGCAAGAAAATGGGATCAATAATGCAAGTACGTCACAAAAGAAGGCTGGAGAGGATCAGAAAAACCAAGGCAACAGCAACAACAATGCAGCAGCGCTTCCTATTACTACTACTCCTCCTCCTGTTCCTAAAAGGAATAGCAATAACTCTGTCGCGCTGAACAATCATTCTGAAAATGCCAAGGAAGTAGTAGTTCCTCAGACAAAGAATAACAACACTGTTAGTAGTGAGTTCAGGAAACTACAATACGTGGACCACAGACCATTGGACCATAGTACTACAGCTCCTAACTACTATGACGTTTACCATCAACTGGACTTGCAGTACCAAGCAGCCCAGAAGTACTATCCATGGAGGATTGATGATGGATCAGACCAAAAGTACCATGGTAGTGGAAGAAGGGTTACTAATGGATCAGAACAGAGGTACAATGGGAATGGAAGAAGGTTCACTAATGGTGGTGGTCAAGAGAGTCAAAAAGATAGAAGATGGGTGCAAAGAGGTAGAGTATCAACCTCGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SelR

Protein Analysis

235

Amino Acids

26.39

Weight (kDa)

9.69

Isoelectric Point (pI)

40.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015322)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17705
fragaria_vesca FvH4_1g11071
malus_domestica MD02G1123500.v1.1 MD15G1237300.v1.1
prunus_persica Prupe.7G175100_v2.0.a1
pyrus_communis pycom02g09620
rosa_chinensis RchiOBHm_Chr2g0098341
rosa_laevigata RLG00000016792
rosa_multiflora Rmu_sc0003434.1_g000003
rosa_roxburghii Rroxscaffold_2G00144050
rosa_rugosa Rorug02G0072200
rosa_samantha Rh2AG119300 Rh2BG122500 Rh2CG124100 Rh2DG124200
rosa_wichuraiana Rw2G009350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 22
AccB7I CCANNNNNTGG 1 cut(s) 496
AccII CGCG 1 cut(s) 338
AclWI GGATC 4 cut(s) 206, 246, 559, 604
AfaI GTAC 6 cut(s) 214, 460, 509, 527, 566, 611
AfeI AGCGCT 1 cut(s) 279
AfiI CCNNNNNNNGG 2 cut(s) 88, 496
AgsI TTSAA 1 cut(s) 133
AluBI AGCT 1 cut(s) 467
AluI AGCT 1 cut(s) 467
Alw26I GTCTC 3 cut(s) 30, 50, 131
AlwI GGATC 4 cut(s) 206, 246, 559, 604
Aor51HI AGCGCT 1 cut(s) 279
ApeKI GCWGC 3 cut(s) 272, 275, 515
AspLEI GCGC 2 cut(s) 280, 340
AspS9I GGNCC 2 cut(s) 436, 451
AvaII GGWCC 2 cut(s) 436, 451
BarI GAAGNNNNNNTAC 2 cut(s) 571, 603
BbvI GCAGC 3 cut(s) 284, 287, 527
BccI CCATC 4 cut(s) 167, 498, 542, 666
BcoDI GTCTC 3 cut(s) 30, 50, 131
BfmI CTRYAG 2 cut(s) 51, 462
BfoI RGCGCY 1 cut(s) 281
BisI GCNGC 3 cut(s) 273, 276, 516
BlsI GCNGC 3 cut(s) 274, 277, 517
BmcAI AGTACT 2 cut(s) 460, 527
Bme18I GGWCC 2 cut(s) 436, 451
BmgT120I GGNCC 2 cut(s) 436, 451
BpmI CTGGAG 1 cut(s) 252
BsaAI YACGTR 1 cut(s) 433
BsaJI CCNNGG 4 cut(s) 250, 363, 533, 568
BsaXI ACNNNNNCTCC 8 cut(s) 280, 283, 286, 310, 313, 316, 451, 481
Bsc4I CCNNNNNNNGG 2 cut(s) 88, 496
Bse1I ACTGG 1 cut(s) 501
BseDI CCNNGG 4 cut(s) 250, 363, 533, 568
BseGI GGATG 1 cut(s) 59
BseLI CCNNNNNNNGG 2 cut(s) 88, 496
BseMII CTCAG 1 cut(s) 395
BseNI ACTGG 1 cut(s) 501
BseRI GAGGAG 2 cut(s) 288, 291
BseXI GCAGC 3 cut(s) 284, 287, 527
Bsh1236I CGCG 1 cut(s) 338
BslI CCNNNNNNNGG 2 cut(s) 88, 496
BsmAI GTCTC 3 cut(s) 30, 50, 131
BsmI GAATGC 1 cut(s) 154
Bsp143I GATC 5 cut(s) 100, 198, 238, 551, 596
Bsp19I CCATGG 2 cut(s) 533, 568
BspCNI CTCAG 1 cut(s) 394
BspFNI CGCG 1 cut(s) 338
BspPI GGATC 4 cut(s) 206, 246, 559, 604
BsrI ACTGG 1 cut(s) 501
BssECI CCNNGG 4 cut(s) 250, 363, 533, 568
BssMI GATC 5 cut(s) 100, 198, 238, 551, 596
BssT1I CCWWGG 4 cut(s) 250, 363, 533, 568
Bst4CI ACNGT 2 cut(s) 116, 403
BstBAI YACGTR 1 cut(s) 433
BstDEI CTNAG 1 cut(s) 381
BstDSI CCRYGG 2 cut(s) 533, 568
BstENI CCTNNNNNAGG 1 cut(s) 86
BstF5I GGATG 1 cut(s) 59
BstFNI CGCG 1 cut(s) 338
BstH2I RGCGCY 1 cut(s) 281
BstHHI GCGC 2 cut(s) 280, 340
BstKTI GATC 5 cut(s) 103, 201, 241, 554, 599
BstMAI GTCTC 3 cut(s) 30, 50, 131
BstMBI GATC 5 cut(s) 100, 198, 238, 551, 596
BstSFI CTRYAG 2 cut(s) 51, 462
BstUI CGCG 1 cut(s) 338
BstV1I GCAGC 3 cut(s) 284, 287, 527
BstXI CCANNNNNNTGG 1 cut(s) 575
BtgI CCRYGG 2 cut(s) 533, 568
BtsCI GGATG 1 cut(s) 59
BtsIMutI CAGTG 2 cut(s) 121, 399
CfoI GCGC 2 cut(s) 280, 340
Cfr13I GGNCC 2 cut(s) 436, 451
Csp6I GTAC 6 cut(s) 213, 459, 508, 526, 565, 610
CviAII CATG 2 cut(s) 534, 569
CviJI RGCY 3 cut(s) 230, 467, 518
CviKI_1 RGCY 3 cut(s) 230, 467, 518
CviQI GTAC 6 cut(s) 213, 459, 508, 526, 565, 610
DdeI CTNAG 1 cut(s) 381
DpnI GATC 5 cut(s) 102, 200, 240, 553, 598
DpnII GATC 5 cut(s) 100, 198, 238, 551, 596
DrdI GACNNNNNNGTC 1 cut(s) 22
DseDI GACNNNNNNGTC 1 cut(s) 22
Eco130I CCWWGG 4 cut(s) 250, 363, 533, 568
Eco47I GGWCC 2 cut(s) 436, 451
Eco47III AGCGCT 1 cut(s) 279
EcoNI CCTNNNNNAGG 1 cut(s) 86
EcoT14I CCWWGG 4 cut(s) 250, 363, 533, 568
ErhI CCWWGG 4 cut(s) 250, 363, 533, 568
FaeI CATG 2 cut(s) 537, 572
FaiI YATR 5 cut(s) 41, 456, 480, 535, 570
FatI CATG 2 cut(s) 533, 568
Fnu4HI GCNGC 3 cut(s) 273, 276, 516
FokI GGATG 1 cut(s) 46
Fsp4HI GCNGC 3 cut(s) 273, 276, 516
GlaI GCGC 2 cut(s) 279, 339
GluI GCNGC 3 cut(s) 273, 276, 516
GsuI CTGGAG 1 cut(s) 252
HaeII RGCGCY 1 cut(s) 281
HhaI GCGC 2 cut(s) 280, 340
Hin1II CATG 2 cut(s) 537, 572
Hin6I GCGC 2 cut(s) 278, 338
HinP1I GCGC 2 cut(s) 278, 338
HinfI GANTC 2 cut(s) 139, 655
Hpy166II GTNNAC 3 cut(s) 436, 487, 633
Hpy188I TCNGA 5 cut(s) 243, 355, 384, 556, 601
Hpy188III TCNNGA 2 cut(s) 418, 650
Hpy8I GTNNAC 3 cut(s) 436, 487, 633
HpyAV CCTTC 5 cut(s) 73, 127, 220, 576, 621
HpyCH4III ACNGT 2 cut(s) 116, 403
HpyCH4IV ACGT 3 cut(s) 215, 432, 483
HpyCH4V TGCA 5 cut(s) 187, 209, 272, 505, 679
HpyF3I CTNAG 1 cut(s) 381
HpySE526I ACGT 3 cut(s) 215, 432, 483
Hsp92II CATG 2 cut(s) 537, 572
HspAI GCGC 2 cut(s) 278, 338
Kzo9I GATC 5 cut(s) 100, 198, 238, 551, 596
LmnI GCTCC 1 cut(s) 472
LpnPI CCDG 5 cut(s) 216, 318, 403, 482, 533
Lsp1109I GCAGC 3 cut(s) 284, 287, 527
MaeII ACGT 3 cut(s) 215, 432, 483
MaeIII GTNAC 2 cut(s) 216, 586
MalI GATC 5 cut(s) 102, 200, 240, 553, 598
MboI GATC 5 cut(s) 100, 198, 238, 551, 596
MboII GAAGA 3 cut(s) 591, 636, 681
MluCI AATT 2 cut(s) 18, 96
MlyI GAGTC 2 cut(s) 133, 664
MmeI TCCRAC 1 cut(s) 52
MnlI CCTC 8 cut(s) 112, 229, 309, 312, 390, 531, 600, 677
MseI TTAA 3 cut(s) 21, 45, 105
MslI CAYNNNNRTG 1 cut(s) 573
Mva1269I GAATGC 1 cut(s) 154
MvnI CGCG 1 cut(s) 338
NcoI CCATGG 2 cut(s) 533, 568
NdeII GATC 5 cut(s) 100, 198, 238, 551, 596
NlaIII CATG 2 cut(s) 537, 572
NmuCI GTSAC 1 cut(s) 216
PctI GAATGC 1 cut(s) 154
PflMI CCANNNNNTGG 1 cut(s) 496
PkrI GCNGC 3 cut(s) 274, 277, 517
PleI GAGTC 2 cut(s) 133, 663
PpsI GAGTC 2 cut(s) 133, 663
Ppu21I YACGTR 1 cut(s) 433
PspPI GGNCC 2 cut(s) 436, 451
RsaI GTAC 6 cut(s) 214, 460, 509, 527, 566, 611
RsaNI GTAC 6 cut(s) 213, 459, 508, 526, 565, 610
RseI CAYNNNNRTG 1 cut(s) 573
SaqAI TTAA 3 cut(s) 21, 45, 105
SatI GCNGC 3 cut(s) 273, 276, 516
Sau3AI GATC 5 cut(s) 100, 198, 238, 551, 596
Sau96I GGNCC 2 cut(s) 436, 451
ScaI AGTACT 2 cut(s) 460, 527
SchI GAGTC 2 cut(s) 133, 664
SetI ASST 8 cut(s) 218, 435, 469, 486, 611, 632, 688, 701
SfcI CTRYAG 2 cut(s) 51, 462
SinI GGWCC 2 cut(s) 436, 451
SmiMI CAYNNNNRTG 1 cut(s) 573
Sse9I AATT 2 cut(s) 18, 96
StyI CCWWGG 4 cut(s) 250, 363, 533, 568
TaaI ACNGT 2 cut(s) 116, 403
TaiI ACGT 3 cut(s) 218, 435, 486
TaqI TCGA 1 cut(s) 701
TasI AATT 2 cut(s) 18, 96
TatI WGTACW 2 cut(s) 458, 525
Tru1I TTAA 3 cut(s) 21, 45, 105
Tru9I TTAA 3 cut(s) 21, 45, 105
TscAI CASTG 2 cut(s) 121, 406
TseFI GTSAC 1 cut(s) 216
TseI GCWGC 3 cut(s) 272, 275, 515
Tsp45I GTSAC 1 cut(s) 216
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 121, 406
Van91I CCANNNNNTGG 1 cut(s) 496
VpaK11BI GGWCC 2 cut(s) 436, 451
XagI CCTNNNNNAGG 1 cut(s) 86
XcmI CCANNNNNNNNNTGG 1 cut(s) 566
ZrmI AGTACT 2 cut(s) 460, 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.