AT2G18290

Component of the anaphase promoting complex cyclosome (APC C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0015965
Physical Location & Seq
Reverse (-)
7948306 .. 7950329
2024 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G18290.1

Sequence Viewer

Length: 579 bp
ATGGCGACAGAGTCATCGGAATCGGAAGAAGAAGGAAAGATTAGTGGAGGAAACTATAAGCTAATCATAGACGACGATCTAAGAGAGATGGGTAAAAACGCAGCTTGGAGCGTTAGCTCTTGTAAGCCCGGCAATGGCGTCACCACTCTCCGCGACGACAATCTCGAGACTTATTGGCAATCAGATGGGTTACAACCACATTTGATTAACATTCAATTCCAGAAGAAAGTGAAACTGCAGTTAGTGGTTTTGTACGTTGACTTTAAGCTTGATGAGAGCTATACACCAAGTAAAATCTCTATTCGAGCTGGTGATGGTTTTCATAACTTAAAGGAGATTAAAAGTGTGGAGCTTGTTAAACCAACTGGTTGGGTTTGCTTATCTTTGTCTGGAACCGATCCACGGGAAACTTTTGTCAATACATTTATGTTACAAATAGCCATTTTGTCAAATCACCTCAACGGGAGAGATACTCATATCCGCCAGATCAAAGTTTACGGCCCTAGACCAAATCCTATTCCGCACCAACCTTTTCAGTTTACATCGATGGAGTTTCTCACTTATTCAACACTGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000152 GO:0000209 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005680 GO:0006275 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008156 GO:0008283 GO:0009056 GO:0009057 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009987 GO:0010087 GO:0010498 GO:0010556 GO:0010558 GO:0010564 GO:0010604 GO:0010605 GO:0010948 GO:0016567 GO:0016604 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0031145 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031461 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032446 GO:0032502 GO:0032875 GO:0032876 GO:0032991 GO:0036211 GO:0043085 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045786 GO:0045934 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051438 GO:0051443 GO:0051603 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0070979 GO:0071704 GO:0080090 GO:0090329 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1903320 GO:1903322 GO:1904666 GO:1904668 GO:1990234 GO:2000104 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166
Pfam Domains
Protein Families
ANAPC10

Protein Analysis

192

Amino Acids

21.75

Weight (kDa)

6.21

Isoelectric Point (pI)

34.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANAPC10 PF03256 8 - 189 1.1e-74 Anaphase-promoting complex, subunit 10 (APC10)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015965)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18290
fragaria_vesca FvH4_1g13080 FvH4_1g13080 FvH4_5g29620
malus_domestica MD02G1145400.v1.1
prunus_persica Prupe.7G156300_v2.0.a1
pyrus_communis pycom02g11510
rosa_chinensis RchiOBHm_Chr2g0101251
rosa_laevigata RLG00000017065
rosa_multiflora Rmu_sc0006314.1_g000017
rosa_roxburghii Rroxscaffold_2G00141460
rosa_rugosa Rorug02G0099700 Rorug02G0099800
rosa_samantha Rh2CG151300
rosa_wichuraiana Rw2G011350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 153
AciI CCGC 3 cut(s) 151, 481, 521
AclWI GGATC 1 cut(s) 392
AcyI GRCGYC 1 cut(s) 138
AfaI GTAC 1 cut(s) 254
AfiI CCNNNNNNNGG 2 cut(s) 134, 402
AgsI TTSAA 2 cut(s) 215, 567
AluBI AGCT 7 cut(s) 61, 104, 117, 268, 279, 308, 352
AluI AGCT 7 cut(s) 61, 104, 117, 268, 279, 308, 352
Alw26I GTCTC 1 cut(s) 161
AlwI GGATC 1 cut(s) 392
Ama87I CYCGRG 1 cut(s) 164
AoxI GGCC 1 cut(s) 499
ApeKI GCWGC 1 cut(s) 101
AspS9I GGNCC 1 cut(s) 500
AsuC2I CCSGG 1 cut(s) 129
AsuHPI GGTGA 3 cut(s) 133, 323, 446
AvaI CYCGRG 1 cut(s) 164
BbvI GCAGC 1 cut(s) 113
BccI CCATC 4 cut(s) 82, 179, 308, 541
BceAI ACGGC 1 cut(s) 514
BcnI CCSGG 1 cut(s) 129
BcoDI GTCTC 1 cut(s) 161
BfaI CTAG 1 cut(s) 504
BfmI CTRYAG 1 cut(s) 236
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
Bme1390I CCNGG 1 cut(s) 129
BmeT110I CYCGRG 1 cut(s) 164
BmgT120I GGNCC 1 cut(s) 500
BmiI GGNNCC 1 cut(s) 394
BmrFI CCNGG 1 cut(s) 129
BplI GAGNNNNNCTC 2 cut(s) 457, 489
BpuMI CCSGG 1 cut(s) 129
Bsa29I ATCGAT 1 cut(s) 545
BsaHI GRCGYC 1 cut(s) 138
BsaJI CCNNGG 1 cut(s) 401
Bsc4I CCNNNNNNNGG 2 cut(s) 134, 402
Bse1I ACTGG 1 cut(s) 370
Bse3DI GCAATG 1 cut(s) 139
BseCI ATCGAT 1 cut(s) 545
BseDI CCNNGG 1 cut(s) 401
BseLI CCNNNNNNNGG 2 cut(s) 134, 402
BseMI GCAATG 1 cut(s) 139
BseMII CTCAG 1 cut(s) 563
BseNI ACTGG 1 cut(s) 370
BseXI GCAGC 1 cut(s) 113
Bsh1236I CGCG 1 cut(s) 153
BshFI GGCC 1 cut(s) 501
BshVI ATCGAT 1 cut(s) 545
BsiHKCI CYCGRG 1 cut(s) 164
BsiSI CCGG 1 cut(s) 129
BslI CCNNNNNNNGG 2 cut(s) 134, 402
BsmAI GTCTC 1 cut(s) 161
BsnI GGCC 1 cut(s) 501
BsoBI CYCGRG 1 cut(s) 164
Bsp143I GATC 3 cut(s) 76, 397, 486
BspACI CCGC 3 cut(s) 151, 481, 521
BspANI GGCC 1 cut(s) 501
BspCNI CTCAG 1 cut(s) 564
BspDI ATCGAT 1 cut(s) 545
BspFNI CGCG 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 394
BspMAI CTGCAG 1 cut(s) 240
BspPI GGATC 1 cut(s) 392
BsrDI GCAATG 1 cut(s) 139
BsrI ACTGG 1 cut(s) 370
BssECI CCNNGG 1 cut(s) 401
BssMI GATC 3 cut(s) 76, 397, 486
BssNI GRCGYC 1 cut(s) 138
BstACI GRCGYC 1 cut(s) 138
BstDEI CTNAG 2 cut(s) 80, 572
BstDSI CCRYGG 1 cut(s) 401
BstFNI CGCG 1 cut(s) 153
BstKTI GATC 3 cut(s) 79, 400, 489
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 3 cut(s) 76, 397, 486
BstSCI CCNGG 1 cut(s) 127
BstSFI CTRYAG 1 cut(s) 236
BstUI CGCG 1 cut(s) 153
BstV1I GCAGC 1 cut(s) 113
BstXI CCANNNNNNTGG 1 cut(s) 369
Bsu15I ATCGAT 1 cut(s) 545
BsuRI GGCC 1 cut(s) 501
BsuTUI ATCGAT 1 cut(s) 545
BtgI CCRYGG 1 cut(s) 401
BtsIMutI CAGTG 1 cut(s) 569
Cfr13I GGNCC 1 cut(s) 500
ClaI ATCGAT 1 cut(s) 545
CseI GACGC 1 cut(s) 127
Csp6I GTAC 1 cut(s) 253
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 2 cut(s) 80, 572
DpnI GATC 3 cut(s) 78, 399, 488
DpnII GATC 3 cut(s) 76, 397, 486
EciI GGCGGA 1 cut(s) 470
Eco88I CYCGRG 1 cut(s) 164
FaiI YATR 6 cut(s) 57, 68, 282, 324, 428, 477
Fnu4HI GCNGC 1 cut(s) 102
Fsp4HI GCNGC 1 cut(s) 102
FspBI CTAG 1 cut(s) 504
GluI GCNGC 1 cut(s) 102
HaeIII GGCC 1 cut(s) 501
HapII CCGG 1 cut(s) 129
HgaI GACGC 1 cut(s) 127
Hin1I GRCGYC 1 cut(s) 138
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HindIII AAGCTT 1 cut(s) 266
HinfI GANTC 2 cut(s) 11, 20
HpaII CCGG 1 cut(s) 129
HphI GGTGA 3 cut(s) 133, 323, 446
Hpy166II GTNNAC 3 cut(s) 259, 496, 540
Hpy188I TCNGA 3 cut(s) 19, 25, 184
Hpy188III TCNNGA 4 cut(s) 164, 166, 220, 390
Hpy8I GTNNAC 3 cut(s) 259, 496, 540
Hpy99I CGWCG 2 cut(s) 77, 158
HpyAV CCTTC 1 cut(s) 26
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 1 cut(s) 238
HpyF3I CTNAG 2 cut(s) 80, 572
HpySE526I ACGT 1 cut(s) 255
Hsp92I GRCGYC 1 cut(s) 138
Kzo9I GATC 3 cut(s) 76, 397, 486
LmnI GCTCC 2 cut(s) 108, 349
LpnPI CCDG 6 cut(s) 142, 233, 294, 351, 375, 497
Lsp1109I GCAGC 1 cut(s) 113
MaeI CTAG 1 cut(s) 504
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 3 cut(s) 139, 189, 429
MalI GATC 3 cut(s) 78, 399, 488
MboI GATC 3 cut(s) 76, 397, 486
MboII GAAGA 3 cut(s) 38, 41, 235
MluCI AATT 1 cut(s) 215
MlyI GAGTC 1 cut(s) 20
MnlI CCTC 2 cut(s) 41, 467
MseI TTAA 5 cut(s) 207, 264, 329, 339, 357
MslI CAYNNNNRTG 1 cut(s) 574
MspI CCGG 1 cut(s) 129
MspR9I CCNGG 1 cut(s) 129
MvnI CGCG 1 cut(s) 153
NciI CCSGG 1 cut(s) 129
NdeII GATC 3 cut(s) 76, 397, 486
NlaIV GGNNCC 1 cut(s) 394
NmuCI GTSAC 1 cut(s) 139
PaeR7I CTCGAG 1 cut(s) 164
PcsI WCGNNNNNNNCGW 1 cut(s) 162
PfeI GAWTC 1 cut(s) 20
PflFI GACNNNGTC 1 cut(s) 10
PkrI GCNGC 1 cut(s) 103
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
PspN4I GGNNCC 1 cut(s) 394
PspPI GGNCC 1 cut(s) 500
PstI CTGCAG 1 cut(s) 240
PsyI GACNNNGTC 1 cut(s) 10
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
RseI CAYNNNNRTG 1 cut(s) 574
SaqAI TTAA 5 cut(s) 207, 264, 329, 339, 357
SatI GCNGC 1 cut(s) 102
Sau3AI GATC 3 cut(s) 76, 397, 486
Sau96I GGNCC 1 cut(s) 500
SchI GAGTC 1 cut(s) 20
ScrFI CCNGG 1 cut(s) 129
SfcI CTRYAG 1 cut(s) 236
Sfr274I CTCGAG 1 cut(s) 164
SlaI CTCGAG 1 cut(s) 164
SmiMI CAYNNNNRTG 1 cut(s) 574
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
Sse9I AATT 1 cut(s) 215
SsiI CCGC 3 cut(s) 151, 481, 521
SspMI CTAG 1 cut(s) 504
StyD4I CCNGG 1 cut(s) 127
TaiI ACGT 1 cut(s) 258
TaqI TCGA 3 cut(s) 165, 304, 545
TasI AATT 1 cut(s) 215
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 5 cut(s) 207, 264, 329, 339, 357
Tru9I TTAA 5 cut(s) 207, 264, 329, 339, 357
TscAI CASTG 1 cut(s) 576
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 1 cut(s) 101
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 1 cut(s) 311
TspRI CASTG 1 cut(s) 576
Tth111I GACNNNGTC 1 cut(s) 10
XhoI CTCGAG 1 cut(s) 164
XspI CTAG 1 cut(s) 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.