FvH4_1g13080

Component of the anaphase promoting complex cyclosome (APC C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0015965
Physical Location & Seq
Reverse (-)
7206116 .. 7208064
1949 bp
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UTR
Exon/CDS
Intron
FvH4_1g13080.t1

Sequence Viewer

Length: 576 bp
ATGGCGGAATCATCGGAGGGAGAAGAGGAAGGGAAGCTGACAGTAGGGAACCAAGTGCTGATGGTGGAAGACGACCTCCGAGAAATGGGCAAGAACGCCGCTTGGAGCGTCAGCTCTTGGAAGTCCGGCAACGGCGTGTCGTATCTCCGCGACGACAATCTCGACACTTACTGGCAATCCGACGGCGCTCAGCCTCATTCGGTCAACATTCAGTTCCAGAAGAAAGTCAAGCTCCAACTTGTTGTTCTGTACGTGGATTTCAAGCTTGATGAGAGCTACACGCCTTCGAAGATATCGATTCGTGCTGGGGATGGCTTCCACAACTTGAAGGACATAAAAACTGTTGAGCTCGATAAGCCGAGGGGTTGGATTCATATATCATTGTCTGGAAATGATGCAAGGGAAACTTTTGTGAACACATTTATGCTGCAAATCTCTGTGTTATCAAATCACCTTAATGGGAGGGACACGCATGTGCGCCAGATCAAACTATATGGCCCTAGACCGAACCCTATTCCACATCAGCCATTTCAGTTTACTTCAAGGGAGTTCATTACCTATGCTTCTATCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000152 GO:0000209 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005680 GO:0006275 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008156 GO:0008283 GO:0009056 GO:0009057 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009987 GO:0010087 GO:0010498 GO:0010556 GO:0010558 GO:0010564 GO:0010604 GO:0010605 GO:0010948 GO:0016567 GO:0016604 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0031145 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031461 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032446 GO:0032502 GO:0032875 GO:0032876 GO:0032991 GO:0036211 GO:0043085 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045786 GO:0045934 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051438 GO:0051443 GO:0051603 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0070979 GO:0071704 GO:0080090 GO:0090329 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1903320 GO:1903322 GO:1904666 GO:1904668 GO:1990234 GO:2000104 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166
Pfam Domains
Protein Families
ANAPC10

Protein Analysis

192

Amino Acids

21.76

Weight (kDa)

6.3

Isoelectric Point (pI)

25.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANAPC10 PF03256 23 - 188 3.5e-74 Anaphase-promoting complex, subunit 10 (APC10)
F5_F8_type_C_2 PF22633 51 - 134 4.1e-06 NedA-like, galactose-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015965)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18290
fragaria_vesca FvH4_1g13080 FvH4_1g13080 FvH4_5g29620
malus_domestica MD02G1145400.v1.1
prunus_persica Prupe.7G156300_v2.0.a1
pyrus_communis pycom02g11510
rosa_chinensis RchiOBHm_Chr2g0101251
rosa_laevigata RLG00000017065
rosa_multiflora Rmu_sc0006314.1_g000017
rosa_roxburghii Rroxscaffold_2G00141460
rosa_rugosa Rorug02G0099700 Rorug02G0099800
rosa_samantha Rh2CG151300
rosa_wichuraiana Rw2G011350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 150
AciI CCGC 3 cut(s) 5, 99, 148
AfaI GTAC 1 cut(s) 251
AfiI CCNNNNNNNGG 1 cut(s) 85
AgsI TTSAA 3 cut(s) 262, 328, 543
AjuI GAANNNNNNNTTGG 2 cut(s) 228, 260
AleI CACNNNNGTG 1 cut(s) 473
AluBI AGCT 6 cut(s) 37, 114, 232, 265, 276, 349
AluI AGCT 6 cut(s) 37, 114, 232, 265, 276, 349
Alw21I GWGCWC 1 cut(s) 351
AoxI GGCC 1 cut(s) 496
ApeKI GCWGC 1 cut(s) 427
AspLEI GCGC 2 cut(s) 188, 480
AspS9I GGNCC 1 cut(s) 497
AsuHPI GGTGA 1 cut(s) 443
AsuII TTCGAA 1 cut(s) 287
BanII GRGCYC 1 cut(s) 351
BbsI GAAGAC 1 cut(s) 75
Bbv12I GWGCWC 1 cut(s) 351
BbvI GCAGC 1 cut(s) 414
BccI CCATC 2 cut(s) 55, 305
BceAI ACGGC 2 cut(s) 148, 199
BfaI CTAG 1 cut(s) 501
BfoI RGCGCY 1 cut(s) 189
BisI GCNGC 2 cut(s) 99, 428
BlpI GCTNAGC 1 cut(s) 189
BlsI GCNGC 2 cut(s) 100, 429
BmgT120I GGNCC 1 cut(s) 497
BmiI GGNNCC 1 cut(s) 50
BmsI GCATC 1 cut(s) 385
BpiI GAAGAC 1 cut(s) 75
Bpu1102I GCTNAGC 1 cut(s) 189
Bpu14I TTCGAA 1 cut(s) 287
Bsa29I ATCGAT 1 cut(s) 296
BsaAI YACGTR 1 cut(s) 253
BsaJI CCNNGG 1 cut(s) 359
Bsc4I CCNNNNNNNGG 1 cut(s) 85
Bse1I ACTGG 1 cut(s) 176
BseCI ATCGAT 1 cut(s) 296
BseDI CCNNGG 1 cut(s) 359
BseGI GGATG 1 cut(s) 316
BseLI CCNNNNNNNGG 1 cut(s) 85
BseMII CTCAG 1 cut(s) 203
BseNI ACTGG 1 cut(s) 176
BseXI GCAGC 1 cut(s) 414
BseYI CCCAGC 1 cut(s) 305
Bsh1236I CGCG 1 cut(s) 150
BshFI GGCC 1 cut(s) 498
BshVI ATCGAT 1 cut(s) 296
BsiHKAI GWGCWC 1 cut(s) 351
BsiSI CCGG 1 cut(s) 126
BslFI GGGAC 1 cut(s) 479
BslI CCNNNNNNNGG 1 cut(s) 85
BsmFI GGGAC 1 cut(s) 479
BsnI GGCC 1 cut(s) 498
Bsp119I TTCGAA 1 cut(s) 287
Bsp1286I GDGCHC 1 cut(s) 351
Bsp143I GATC 1 cut(s) 483
Bsp1720I GCTNAGC 1 cut(s) 189
BspACI CCGC 3 cut(s) 5, 99, 148
BspANI GGCC 1 cut(s) 498
BspCNI CTCAG 1 cut(s) 202
BspDI ATCGAT 1 cut(s) 296
BspFNI CGCG 1 cut(s) 150
BspLI GGNNCC 1 cut(s) 50
BspT104I TTCGAA 1 cut(s) 287
BsrI ACTGG 1 cut(s) 176
BssECI CCNNGG 1 cut(s) 359
BssMI GATC 1 cut(s) 483
Bst4CI ACNGT 2 cut(s) 43, 343
Bst6I CTCTTC 1 cut(s) 18
BstBAI YACGTR 1 cut(s) 253
BstBI TTCGAA 1 cut(s) 287
BstDEI CTNAG 1 cut(s) 189
BstF5I GGATG 1 cut(s) 316
BstFNI CGCG 1 cut(s) 150
BstH2I RGCGCY 1 cut(s) 189
BstHHI GCGC 2 cut(s) 188, 480
BstKTI GATC 1 cut(s) 486
BstMBI GATC 1 cut(s) 483
BstMWI GCNNNNNNNGC 1 cut(s) 355
BstNSI RCATGY 1 cut(s) 476
BstUI CGCG 1 cut(s) 150
BstV1I GCAGC 1 cut(s) 414
BstV2I GAAGAC 1 cut(s) 75
Bsu15I ATCGAT 1 cut(s) 296
BsuRI GGCC 1 cut(s) 498
BsuTUI ATCGAT 1 cut(s) 296
BtsCI GGATG 1 cut(s) 316
CfoI GCGC 2 cut(s) 188, 480
Cfr13I GGNCC 1 cut(s) 497
ClaI ATCGAT 1 cut(s) 296
CseI GACGC 1 cut(s) 97
Csp6I GTAC 1 cut(s) 250
CviAII CATG 1 cut(s) 473
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 1 cut(s) 189
DpnI GATC 1 cut(s) 485
DpnII GATC 1 cut(s) 483
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 349
Eco24I GRGCYC 1 cut(s) 351
Eco32I GATATC 1 cut(s) 294
Eco53kI GAGCTC 1 cut(s) 349
EcoICRI GAGCTC 1 cut(s) 349
EcoRV GATATC 1 cut(s) 294
EcoT38I GRGCYC 1 cut(s) 351
FaeI CATG 1 cut(s) 476
FaiI YATR 8 cut(s) 335, 375, 377, 425, 474, 493, 495, 561
FalI AAGNNNNNCTT 2 cut(s) 391, 423
FaqI GGGAC 1 cut(s) 479
FatI CATG 1 cut(s) 472
Fnu4HI GCNGC 2 cut(s) 99, 428
FokI GGATG 1 cut(s) 323
FriOI GRGCYC 1 cut(s) 351
Fsp4HI GCNGC 2 cut(s) 99, 428
FspBI CTAG 1 cut(s) 501
GlaI GCGC 2 cut(s) 187, 479
GluI GCNGC 2 cut(s) 99, 428
GsaI CCCAGC 1 cut(s) 309
HaeII RGCGCY 1 cut(s) 189
HaeIII GGCC 1 cut(s) 498
HapII CCGG 1 cut(s) 126
HgaI GACGC 1 cut(s) 97
HhaI GCGC 2 cut(s) 188, 480
Hin1II CATG 1 cut(s) 476
Hin6I GCGC 2 cut(s) 186, 478
HinP1I GCGC 2 cut(s) 186, 478
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HindIII AAGCTT 1 cut(s) 263
HinfI GANTC 3 cut(s) 8, 298, 370
HpaII CCGG 1 cut(s) 126
HphI GGTGA 1 cut(s) 443
Hpy166II GTNNAC 3 cut(s) 205, 415, 537
Hpy188I TCNGA 4 cut(s) 16, 80, 181, 572
Hpy188III TCNNGA 3 cut(s) 161, 217, 387
Hpy8I GTNNAC 3 cut(s) 205, 415, 537
Hpy99I CGWCG 2 cut(s) 155, 185
HpyAV CCTTC 3 cut(s) 23, 294, 322
HpyCH4III ACNGT 2 cut(s) 43, 343
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 2 cut(s) 398, 430
HpyF10VI GCNNNNNNNGC 1 cut(s) 355
HpyF3I CTNAG 1 cut(s) 189
HpySE526I ACGT 1 cut(s) 252
Hsp92II CATG 1 cut(s) 476
HspAI GCGC 2 cut(s) 186, 478
Kzo9I GATC 1 cut(s) 483
LmnI GCTCC 2 cut(s) 105, 237
LpnPI CCDG 6 cut(s) 139, 157, 230, 291, 372, 494
Lsp1109I GCAGC 1 cut(s) 414
LweI GCATC 1 cut(s) 385
MaeI CTAG 1 cut(s) 501
MaeII ACGT 1 cut(s) 252
MalI GATC 1 cut(s) 485
MboI GATC 1 cut(s) 483
MboII GAAGA 4 cut(s) 35, 80, 232, 301
MhlI GDGCHC 1 cut(s) 351
MmeI TCCRAC 3 cut(s) 204, 259, 347
MnlI CCTC 6 cut(s) 10, 19, 86, 204, 354, 456
MseI TTAA 1 cut(s) 456
MslI CAYNNNNRTG 3 cut(s) 422, 456, 473
MspI CCGG 1 cut(s) 126
MvnI CGCG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 355
NdeII GATC 1 cut(s) 483
NlaIII CATG 1 cut(s) 476
NlaIV GGNNCC 1 cut(s) 50
NmeAIII GCCGAG 1 cut(s) 384
NspI RCATGY 1 cut(s) 476
NspV TTCGAA 1 cut(s) 287
OliI CACNNNNGTG 1 cut(s) 473
PcsI WCGNNNNNNNCGW 2 cut(s) 159, 293
PfeI GAWTC 3 cut(s) 8, 298, 370
PkrI GCNGC 2 cut(s) 100, 429
Ppu21I YACGTR 1 cut(s) 253
Psp124BI GAGCTC 1 cut(s) 351
PspFI CCCAGC 1 cut(s) 305
PspN4I GGNNCC 1 cut(s) 50
PspPI GGNCC 1 cut(s) 497
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
RseI CAYNNNNRTG 3 cut(s) 422, 456, 473
SacI GAGCTC 1 cut(s) 351
SaqAI TTAA 1 cut(s) 456
SatI GCNGC 2 cut(s) 99, 428
Sau3AI GATC 1 cut(s) 483
Sau96I GGNCC 1 cut(s) 497
SduI GDGCHC 1 cut(s) 351
SfaNI GCATC 1 cut(s) 385
SfuI TTCGAA 1 cut(s) 287
SmiMI CAYNNNNRTG 3 cut(s) 422, 456, 473
SsiI CCGC 3 cut(s) 5, 99, 148
SspMI CTAG 1 cut(s) 501
SstI GAGCTC 1 cut(s) 351
TaaI ACNGT 2 cut(s) 43, 343
TaiI ACGT 1 cut(s) 255
TaqI TCGA 4 cut(s) 162, 287, 296, 351
TaqII GACCGA 2 cut(s) 190, 520
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 3 cut(s) 8, 298, 370
Tru1I TTAA 1 cut(s) 456
Tru9I TTAA 1 cut(s) 456
TseI GCWGC 1 cut(s) 427
TspDTI ATGAA 2 cut(s) 362, 541
XceI RCATGY 1 cut(s) 476
XspI CTAG 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.