Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006314.1

Orthogroup ID

OG0015965

Physical Location & Seq

Genomic Coordinates Reverse (-)

77866 .. 79780

Gene Structure 1915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006314.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atggcgacagaatcatcggagggagaagaggaagggaagctgacggtagggaaccaagtgctaatggtggaagacgacctccgagaaatgggcaagaacgccgcctggagcgtcagctcttggaagtccggcaacggcgtgtcgtttctccgcgacgacaatctcgacacttactggcaatcggacggcgctcagcctcactcggtcaacattcagttccagaagaaagtcaagctccaacttgttgttctctacgtggatttcaagcttgatgagagctatacgccatcgaagatatcgattcgtgctggggatggcttccacaacttgaaggacataaaaaccgttgagctcgataagccgaggggttgggttcatatatctctgtctggaaatgatgcaagggaaacttttgtcaacacatttatgctgcaaatctcagtgttatcaaatcaccttaatgggagggacacgcatgtgcgccagatcaaactatatggccctagaccgaaccctattccacaccagccatttcagtttacttcaaggaagttcattacctatgcttctatcagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0000209 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005680 GO:0006275 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008156 GO:0008283 GO:0009056 GO:0009057 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009987 GO:0010087 GO:0010498 GO:0010556 GO:0010558 GO:0010564 GO:0010604 GO:0010605 GO:0010948 GO:0016567 GO:0016604 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0031145 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031461 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032446 GO:0032502 GO:0032875 GO:0032876 GO:0032991 GO:0036211 GO:0043085 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045786 GO:0045934 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051438 GO:0051443 GO:0051603 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0070979 GO:0071704 GO:0080090 GO:0090329 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1903320 GO:1903322 GO:1904666 GO:1904668 GO:1990234 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC10

Protein Analysis

192

Amino Acids

21.83

Weight (kDa)

7.03

Isoelectric Point (pI)

25.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18290
fragaria_vesca	FvH4_1g13080 FvH4_1g13080 FvH4_5g29620
malus_domestica	MD02G1145400.v1.1
prunus_persica	Prupe.7G156300_v2.0.a1
pyrus_communis	pycom02g11510
rosa_chinensis	RchiOBHm_Chr2g0101251
rosa_laevigata	RLG00000017065
rosa_multiflora	Rmu_sc0006314.1_g000017
rosa_roxburghii	Rroxscaffold_2G00141460
rosa_rugosa	Rorug02G0099700 Rorug02G0099800
rosa_samantha	Rh2CG151300
rosa_wichuraiana	Rw2G011350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	153
AciI	CCGC	2 cut(s)	102, 151
AfiI	CCNNNNNNNGG	1 cut(s)	88
AgsI	TTSAA	3 cut(s)	265, 331, 546
AjnI	CCWGG	1 cut(s)	104
AjuI	GAANNNNNNNTTGG	2 cut(s)	231, 263
AleI	CACNNNNGTG	1 cut(s)	476
AluBI	AGCT	6 cut(s)	40, 117, 235, 268, 279, 352
AluI	AGCT	6 cut(s)	40, 117, 235, 268, 279, 352
Alw21I	GWGCWC	1 cut(s)	354
AoxI	GGCC	1 cut(s)	499
ApeKI	GCWGC	1 cut(s)	430
AspLEI	GCGC	2 cut(s)	191, 483
AspS9I	GGNCC	1 cut(s)	500
AsuHPI	GGTGA	1 cut(s)	446
BanII	GRGCYC	1 cut(s)	354
BbsI	GAAGAC	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	354
BbvI	GCAGC	1 cut(s)	417
BccI	CCATC	2 cut(s)	295, 308
BceAI	ACGGC	2 cut(s)	151, 202
BciT130I	CCWGG	1 cut(s)	106
BfaI	CTAG	1 cut(s)	504
BfoI	RGCGCY	1 cut(s)	192
BisI	GCNGC	2 cut(s)	102, 431
BlpI	GCTNAGC	1 cut(s)	192
BlsI	GCNGC	2 cut(s)	103, 432
Bme1390I	CCNGG	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	500
BmiI	GGNNCC	1 cut(s)	53
BmrFI	CCNGG	1 cut(s)	106
BmsI	GCATC	1 cut(s)	388
BpiI	GAAGAC	1 cut(s)	78
BpmI	CTGGAG	1 cut(s)	127
Bpu1102I	GCTNAGC	1 cut(s)	192
Bsa29I	ATCGAT	1 cut(s)	299
BsaAI	YACGTR	1 cut(s)	256
BsaJI	CCNNGG	1 cut(s)	362
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
Bse1I	ACTGG	1 cut(s)	179
BseBI	CCWGG	1 cut(s)	106
BseCI	ATCGAT	1 cut(s)	299
BseDI	CCNNGG	1 cut(s)	362
BseGI	GGATG	1 cut(s)	319
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseMII	CTCAG	2 cut(s)	206, 453
BseNI	ACTGG	1 cut(s)	179
BseXI	GCAGC	1 cut(s)	417
BseYI	CCCAGC	1 cut(s)	308
Bsh1236I	CGCG	1 cut(s)	153
BshFI	GGCC	1 cut(s)	501
BshVI	ATCGAT	1 cut(s)	299
BsiHKAI	GWGCWC	1 cut(s)	354
BsiSI	CCGG	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	482
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmFI	GGGAC	1 cut(s)	482
BsnI	GGCC	1 cut(s)	501
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp143I	GATC	1 cut(s)	486
Bsp1720I	GCTNAGC	1 cut(s)	192
BspACI	CCGC	2 cut(s)	102, 151
BspANI	GGCC	1 cut(s)	501
BspCNI	CTCAG	2 cut(s)	205, 452
BspDI	ATCGAT	1 cut(s)	299
BspFNI	CGCG	1 cut(s)	153
BspLI	GGNNCC	1 cut(s)	53
BsrI	ACTGG	1 cut(s)	179
BssECI	CCNNGG	1 cut(s)	362
BssMI	GATC	1 cut(s)	486
Bst2UI	CCWGG	1 cut(s)	106
Bst4CI	ACNGT	2 cut(s)	46, 346
Bst6I	CTCTTC	1 cut(s)	21
BstBAI	YACGTR	1 cut(s)	256
BstDEI	CTNAG	2 cut(s)	192, 439
BstF5I	GGATG	1 cut(s)	319
BstFNI	CGCG	1 cut(s)	153
BstH2I	RGCGCY	1 cut(s)	192
BstHHI	GCGC	2 cut(s)	191, 483
BstKTI	GATC	1 cut(s)	489
BstMBI	GATC	1 cut(s)	486
BstMWI	GCNNNNNNNGC	1 cut(s)	358
BstNI	CCWGG	1 cut(s)	106
BstNSI	RCATGY	1 cut(s)	479
BstSCI	CCNGG	1 cut(s)	104
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	417
BstV2I	GAAGAC	1 cut(s)	78
Bsu15I	ATCGAT	1 cut(s)	299
BsuRI	GGCC	1 cut(s)	501
BsuTUI	ATCGAT	1 cut(s)	299
BtsCI	GGATG	1 cut(s)	319
BtsIMutI	CAGTG	1 cut(s)	447
CfoI	GCGC	2 cut(s)	191, 483
Cfr13I	GGNCC	1 cut(s)	500
ClaI	ATCGAT	1 cut(s)	299
CseI	GACGC	1 cut(s)	100
CviAII	CATG	1 cut(s)	476
DdeI	CTNAG	2 cut(s)	192, 439
DpnI	GATC	1 cut(s)	488
DpnII	GATC	1 cut(s)	486
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
Ecl136II	GAGCTC	1 cut(s)	352
Eco24I	GRGCYC	1 cut(s)	354
Eco32I	GATATC	1 cut(s)	297
Eco53kI	GAGCTC	1 cut(s)	352
EcoICRI	GAGCTC	1 cut(s)	352
EcoRII	CCWGG	1 cut(s)	104
EcoRV	GATATC	1 cut(s)	297
EcoT38I	GRGCYC	1 cut(s)	354
FaeI	CATG	1 cut(s)	479
FaiI	YATR	9 cut(s)	282, 338, 378, 380, 428, 477, 496, 498, 564
FalI	AAGNNNNNCTT	2 cut(s)	394, 426
FaqI	GGGAC	1 cut(s)	482
FatI	CATG	1 cut(s)	475
Fnu4HI	GCNGC	2 cut(s)	102, 431
FokI	GGATG	1 cut(s)	326
FriOI	GRGCYC	1 cut(s)	354
Fsp4HI	GCNGC	2 cut(s)	102, 431
FspBI	CTAG	1 cut(s)	504
GlaI	GCGC	2 cut(s)	190, 482
GluI	GCNGC	2 cut(s)	102, 431
GsaI	CCCAGC	1 cut(s)	312
GsuI	CTGGAG	1 cut(s)	127
HaeII	RGCGCY	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	501
HapII	CCGG	1 cut(s)	129
HgaI	GACGC	1 cut(s)	100
HhaI	GCGC	2 cut(s)	191, 483
Hin1II	CATG	1 cut(s)	479
Hin6I	GCGC	2 cut(s)	189, 481
HinP1I	GCGC	2 cut(s)	189, 481
HincII	GTYRAC	2 cut(s)	208, 418
HindII	GTYRAC	2 cut(s)	208, 418
HindIII	AAGCTT	1 cut(s)	266
HinfI	GANTC	2 cut(s)	11, 301
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	1 cut(s)	446
Hpy166II	GTNNAC	3 cut(s)	208, 418, 540
Hpy188I	TCNGA	4 cut(s)	19, 83, 184, 575
Hpy188III	TCNNGA	3 cut(s)	164, 220, 390
Hpy8I	GTNNAC	3 cut(s)	208, 418, 540
Hpy99I	CGWCG	1 cut(s)	158
HpyAV	CCTTC	2 cut(s)	26, 325
HpyCH4III	ACNGT	2 cut(s)	46, 346
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	2 cut(s)	401, 433
HpyF10VI	GCNNNNNNNGC	1 cut(s)	358
HpyF3I	CTNAG	2 cut(s)	192, 439
HpySE526I	ACGT	1 cut(s)	255
Hsp92II	CATG	1 cut(s)	479
HspAI	GCGC	2 cut(s)	189, 481
Kzo9I	GATC	1 cut(s)	486
LmnI	GCTCC	2 cut(s)	108, 240
LpnPI	CCDG	9 cut(s)	91, 118, 142, 160, 233, 294, 375, 497, 539
Lsp1109I	GCAGC	1 cut(s)	417
LweI	GCATC	1 cut(s)	388
MaeI	CTAG	1 cut(s)	504
MaeII	ACGT	1 cut(s)	255
MalI	GATC	1 cut(s)	488
MboI	GATC	1 cut(s)	486
MboII	GAAGA	4 cut(s)	38, 83, 235, 304
MhlI	GDGCHC	1 cut(s)	354
MmeI	TCCRAC	1 cut(s)	262
MnlI	CCTC	6 cut(s)	13, 22, 89, 207, 357, 459
MseI	TTAA	1 cut(s)	459
MslI	CAYNNNNRTG	3 cut(s)	425, 459, 476
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	1 cut(s)	106
MvaI	CCWGG	1 cut(s)	106
MvnI	CGCG	1 cut(s)	153
MwoI	GCNNNNNNNGC	1 cut(s)	358
NdeII	GATC	1 cut(s)	486
NlaIII	CATG	1 cut(s)	479
NlaIV	GGNNCC	1 cut(s)	53
NmeAIII	GCCGAG	1 cut(s)	387
NspI	RCATGY	1 cut(s)	479
OliI	CACNNNNGTG	1 cut(s)	476
PcsI	WCGNNNNNNNCGW	2 cut(s)	162, 296
PfeI	GAWTC	2 cut(s)	11, 301
PkrI	GCNGC	2 cut(s)	103, 432
Ppu21I	YACGTR	1 cut(s)	256
Psp124BI	GAGCTC	1 cut(s)	354
Psp6I	CCWGG	1 cut(s)	104
PspFI	CCCAGC	1 cut(s)	308
PspGI	CCWGG	1 cut(s)	104
PspN4I	GGNNCC	1 cut(s)	53
PspPI	GGNCC	1 cut(s)	500
RseI	CAYNNNNRTG	3 cut(s)	425, 459, 476
SacI	GAGCTC	1 cut(s)	354
SaqAI	TTAA	1 cut(s)	459
SatI	GCNGC	2 cut(s)	102, 431
Sau3AI	GATC	1 cut(s)	486
Sau96I	GGNCC	1 cut(s)	500
ScrFI	CCNGG	1 cut(s)	106
SduI	GDGCHC	1 cut(s)	354
SfaNI	GCATC	1 cut(s)	388
SmiMI	CAYNNNNRTG	3 cut(s)	425, 459, 476
SsiI	CCGC	2 cut(s)	102, 151
SspMI	CTAG	1 cut(s)	504
SstI	GAGCTC	1 cut(s)	354
StyD4I	CCNGG	1 cut(s)	104
TaaI	ACNGT	2 cut(s)	46, 346
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	4 cut(s)	165, 290, 299, 354
TaqII	GACCGA	2 cut(s)	193, 523
TauI	GCSGC	1 cut(s)	104
TfiI	GAWTC	2 cut(s)	11, 301
Tru1I	TTAA	1 cut(s)	459
Tru9I	TTAA	1 cut(s)	459
TscAI	CASTG	1 cut(s)	447
TseI	GCWGC	1 cut(s)	430
TspDTI	ATGAA	2 cut(s)	365, 544
TspRI	CASTG	1 cut(s)	447
XceI	RCATGY	1 cut(s)	479
XspI	CTAG	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.