FvH4_5g29620

Component of the anaphase promoting complex cyclosome (APC C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0015965
Physical Location & Seq
Forward (+)
20561821 .. 20563989
2169 bp
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UTR
Exon/CDS
Intron
FvH4_5g29620.t1

Sequence Viewer

Length: 606 bp
ATGAATTTTGCACTTATATGGAATCCAAGAATGGCGGAATCATCGGAGGGAGAAGAGGAAGGGAAGCTGACAGTAGGGAACCAAGTGCTGATGGTGGAAGACAACCTCCGAGAAACGGGCAAGAACGCCACCTGGAGCGTCAGCTCCTGGAAGTCCGGCAACGGTGTGTCGTATCTCCGCGATGACAATCTCGATACTTATTGGCAATCAGACGGTGCTCAGCCTCATTTGGTCAACATTCAGTTCCAGAAGAAAGTGAAGCTTCAACTTGTTGTTCTCTACGTGGATTTCAAACTTGATGAGAGCTATACGCCATCTAAGATATTGATTCGTGCTGGGGATGGCTTCCACAACTTGAAGGATATAAAAACTGTTGAGCTCTATAAGCCGAGGGGTTGGATTTATATATCATTGTCTGGAAATGATGCAAGGGAAACTTTCGTCAACACATTTATGCTGCAAATCTCTGTGTTATCAAATCACCTTAACGGGAGGGACACGCATGTGCGCCAGATCAAACTATATGGCCCTAGACTGAACCCTATTCCACATCAGCCATTTCAGTTTACTTCAAGGGAGTTCAGTACCTATGCTTCTATCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000152 GO:0000209 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005680 GO:0006275 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008156 GO:0008283 GO:0009056 GO:0009057 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009987 GO:0010087 GO:0010498 GO:0010556 GO:0010558 GO:0010564 GO:0010604 GO:0010605 GO:0010948 GO:0016567 GO:0016604 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0031145 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031461 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032446 GO:0032502 GO:0032875 GO:0032876 GO:0032991 GO:0036211 GO:0043085 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045786 GO:0045934 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051438 GO:0051443 GO:0051603 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0070979 GO:0071704 GO:0080090 GO:0090329 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1903320 GO:1903322 GO:1904666 GO:1904668 GO:1990234 GO:2000104 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166
Pfam Domains
Protein Families
ANAPC10

Protein Analysis

202

Amino Acids

23.11

Weight (kDa)

7.92

Isoelectric Point (pI)

20.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANAPC10 PF03256 30 - 198 4e-71 Anaphase-promoting complex, subunit 10 (APC10)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015965)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18290
fragaria_vesca FvH4_1g13080 FvH4_1g13080 FvH4_5g29620
malus_domestica MD02G1145400.v1.1
prunus_persica Prupe.7G156300_v2.0.a1
pyrus_communis pycom02g11510
rosa_chinensis RchiOBHm_Chr2g0101251
rosa_laevigata RLG00000017065
rosa_multiflora Rmu_sc0006314.1_g000017
rosa_roxburghii Rroxscaffold_2G00141460
rosa_rugosa Rorug02G0099700 Rorug02G0099800
rosa_samantha Rh2CG151300
rosa_wichuraiana Rw2G011350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 180
AciI CCGC 2 cut(s) 35, 178
AcsI RAATTY 1 cut(s) 4
AfaI GTAC 1 cut(s) 586
AfiI CCNNNNNNNGG 1 cut(s) 115
AgsI TTSAA 4 cut(s) 266, 292, 358, 573
AjnI CCWGG 2 cut(s) 131, 146
AleI CACNNNNGTG 1 cut(s) 503
AluBI AGCT 5 cut(s) 67, 144, 262, 306, 379
AluI AGCT 5 cut(s) 67, 144, 262, 306, 379
Alw21I GWGCWC 2 cut(s) 220, 381
AlwNI CAGNNNCTG 1 cut(s) 147
AoxI GGCC 1 cut(s) 526
ApeKI GCWGC 1 cut(s) 457
ApoI RAATTY 1 cut(s) 4
AspLEI GCGC 1 cut(s) 510
AspS9I GGNCC 1 cut(s) 527
AsuHPI GGTGA 1 cut(s) 473
BanII GRGCYC 1 cut(s) 381
BarI GAAGNNNNNNTAC 1 cut(s) 577
BbsI GAAGAC 1 cut(s) 105
Bbv12I GWGCWC 2 cut(s) 220, 381
BbvI GCAGC 1 cut(s) 444
BccI CCATC 3 cut(s) 85, 322, 335
BciT130I CCWGG 2 cut(s) 133, 148
BfaI CTAG 1 cut(s) 531
BisI GCNGC 1 cut(s) 458
BlpI GCTNAGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 459
Bme1390I CCNGG 2 cut(s) 133, 148
BmgT120I GGNCC 1 cut(s) 527
BmiI GGNNCC 1 cut(s) 80
BmrFI CCNGG 2 cut(s) 133, 148
BmsI GCATC 1 cut(s) 415
BpiI GAAGAC 1 cut(s) 105
BpmI CTGGAG 1 cut(s) 154
Bpu1102I GCTNAGC 1 cut(s) 219
BsaAI YACGTR 1 cut(s) 283
BsaBI GATNNNNATC 1 cut(s) 186
BsaJI CCNNGG 1 cut(s) 389
Bsc4I CCNNNNNNNGG 1 cut(s) 115
Bse8I GATNNNNATC 1 cut(s) 186
BseBI CCWGG 2 cut(s) 133, 148
BseDI CCNNGG 1 cut(s) 389
BseGI GGATG 1 cut(s) 346
BseJI GATNNNNATC 1 cut(s) 186
BseLI CCNNNNNNNGG 1 cut(s) 115
BseMII CTCAG 1 cut(s) 233
BseXI GCAGC 1 cut(s) 444
BseYI CCCAGC 1 cut(s) 335
Bsh1236I CGCG 1 cut(s) 180
BshFI GGCC 1 cut(s) 528
BsiHKAI GWGCWC 2 cut(s) 220, 381
BsiSI CCGG 1 cut(s) 156
BslFI GGGAC 1 cut(s) 509
BslI CCNNNNNNNGG 1 cut(s) 115
BsmFI GGGAC 1 cut(s) 509
BsnI GGCC 1 cut(s) 528
Bsp1286I GDGCHC 2 cut(s) 220, 381
Bsp143I GATC 1 cut(s) 513
Bsp1720I GCTNAGC 1 cut(s) 219
BspACI CCGC 2 cut(s) 35, 178
BspANI GGCC 1 cut(s) 528
BspCNI CTCAG 1 cut(s) 232
BspFNI CGCG 1 cut(s) 180
BspLI GGNNCC 1 cut(s) 80
BssECI CCNNGG 1 cut(s) 389
BssMI GATC 1 cut(s) 513
Bst2UI CCWGG 2 cut(s) 133, 148
Bst4CI ACNGT 4 cut(s) 73, 164, 215, 373
Bst6I CTCTTC 1 cut(s) 48
BstBAI YACGTR 1 cut(s) 283
BstDEI CTNAG 2 cut(s) 219, 318
BstF5I GGATG 1 cut(s) 346
BstFNI CGCG 1 cut(s) 180
BstHHI GCGC 1 cut(s) 510
BstKTI GATC 1 cut(s) 516
BstMBI GATC 1 cut(s) 513
BstMWI GCNNNNNNNGC 1 cut(s) 385
BstNI CCWGG 2 cut(s) 133, 148
BstNSI RCATGY 1 cut(s) 506
BstSCI CCNGG 2 cut(s) 131, 146
BstUI CGCG 1 cut(s) 180
BstV1I GCAGC 1 cut(s) 444
BstV2I GAAGAC 1 cut(s) 105
BsuRI GGCC 1 cut(s) 528
BtgZI GCGATG 1 cut(s) 195
BtsCI GGATG 1 cut(s) 346
CaiI CAGNNNCTG 1 cut(s) 147
CfoI GCGC 1 cut(s) 510
Cfr13I GGNCC 1 cut(s) 527
CseI GACGC 1 cut(s) 127
Csp6I GTAC 1 cut(s) 585
CviAII CATG 1 cut(s) 503
CviQI GTAC 1 cut(s) 585
DdeI CTNAG 2 cut(s) 219, 318
DpnI GATC 1 cut(s) 515
DpnII GATC 1 cut(s) 513
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
EciI GGCGGA 1 cut(s) 50
Ecl136II GAGCTC 1 cut(s) 379
Eco24I GRGCYC 1 cut(s) 381
Eco53kI GAGCTC 1 cut(s) 379
EcoICRI GAGCTC 1 cut(s) 379
EcoRII CCWGG 2 cut(s) 131, 146
EcoT38I GRGCYC 1 cut(s) 381
FaeI CATG 1 cut(s) 506
FalI AAGNNNNNCTT 4 cut(s) 246, 278, 421, 453
FaqI GGGAC 1 cut(s) 509
FatI CATG 1 cut(s) 502
Fnu4HI GCNGC 1 cut(s) 458
FokI GGATG 1 cut(s) 353
FriOI GRGCYC 1 cut(s) 381
Fsp4HI GCNGC 1 cut(s) 458
FspBI CTAG 1 cut(s) 531
GlaI GCGC 1 cut(s) 509
GluI GCNGC 1 cut(s) 458
GsaI CCCAGC 1 cut(s) 339
GsuI CTGGAG 1 cut(s) 154
HaeIII GGCC 1 cut(s) 528
HapII CCGG 1 cut(s) 156
HgaI GACGC 1 cut(s) 127
HhaI GCGC 1 cut(s) 510
Hin1II CATG 1 cut(s) 506
Hin6I GCGC 1 cut(s) 508
HinP1I GCGC 1 cut(s) 508
HincII GTYRAC 2 cut(s) 235, 445
HindII GTYRAC 2 cut(s) 235, 445
HindIII AAGCTT 1 cut(s) 260
HinfI GANTC 3 cut(s) 22, 38, 328
HpaII CCGG 1 cut(s) 156
HphI GGTGA 1 cut(s) 473
Hpy166II GTNNAC 3 cut(s) 235, 445, 567
Hpy188I TCNGA 4 cut(s) 46, 110, 211, 602
Hpy188III TCNNGA 3 cut(s) 191, 247, 417
Hpy8I GTNNAC 3 cut(s) 235, 445, 567
HpyAV CCTTC 2 cut(s) 53, 352
HpyCH4III ACNGT 4 cut(s) 73, 164, 215, 373
HpyCH4IV ACGT 1 cut(s) 282
HpyCH4V TGCA 3 cut(s) 11, 428, 460
HpyF10VI GCNNNNNNNGC 1 cut(s) 385
HpyF3I CTNAG 2 cut(s) 219, 318
HpySE526I ACGT 1 cut(s) 282
Hsp92II CATG 1 cut(s) 506
HspAI GCGC 1 cut(s) 508
Kzo9I GATC 1 cut(s) 513
LmnI GCTCC 2 cut(s) 135, 149
LpnPI CCDG 9 cut(s) 118, 133, 145, 160, 169, 260, 321, 402, 524
Lsp1109I GCAGC 1 cut(s) 444
LweI GCATC 1 cut(s) 415
MaeI CTAG 1 cut(s) 531
MaeII ACGT 1 cut(s) 282
MalI GATC 1 cut(s) 515
MboI GATC 1 cut(s) 513
MboII GAAGA 3 cut(s) 65, 110, 262
MhlI GDGCHC 2 cut(s) 220, 381
MluCI AATT 1 cut(s) 4
MmeI TCCRAC 1 cut(s) 377
MnlI CCTC 6 cut(s) 40, 49, 116, 234, 384, 486
MseI TTAA 1 cut(s) 486
MslI CAYNNNNRTG 3 cut(s) 16, 452, 503
MspI CCGG 1 cut(s) 156
MspR9I CCNGG 2 cut(s) 133, 148
MvaI CCWGG 2 cut(s) 133, 148
MvnI CGCG 1 cut(s) 180
MwoI GCNNNNNNNGC 1 cut(s) 385
NdeII GATC 1 cut(s) 513
NlaIII CATG 1 cut(s) 506
NlaIV GGNNCC 1 cut(s) 80
NmeAIII GCCGAG 1 cut(s) 414
NspI RCATGY 1 cut(s) 506
OliI CACNNNNGTG 1 cut(s) 503
PfeI GAWTC 3 cut(s) 22, 38, 328
PfoI TCCNGGA 1 cut(s) 146
PkrI GCNGC 1 cut(s) 459
Ppu21I YACGTR 1 cut(s) 283
Psp124BI GAGCTC 1 cut(s) 381
Psp6I CCWGG 2 cut(s) 131, 146
PspFI CCCAGC 1 cut(s) 335
PspGI CCWGG 2 cut(s) 131, 146
PspN4I GGNNCC 1 cut(s) 80
PspPI GGNCC 1 cut(s) 527
PstNI CAGNNNCTG 1 cut(s) 147
RsaI GTAC 1 cut(s) 586
RsaNI GTAC 1 cut(s) 585
RseI CAYNNNNRTG 3 cut(s) 16, 452, 503
SacI GAGCTC 1 cut(s) 381
SaqAI TTAA 1 cut(s) 486
SatI GCNGC 1 cut(s) 458
Sau3AI GATC 1 cut(s) 513
Sau96I GGNCC 1 cut(s) 527
ScrFI CCNGG 2 cut(s) 133, 148
SduI GDGCHC 2 cut(s) 220, 381
SfaNI GCATC 1 cut(s) 415
SmiMI CAYNNNNRTG 3 cut(s) 16, 452, 503
Sse9I AATT 1 cut(s) 4
SsiI CCGC 2 cut(s) 35, 178
SspMI CTAG 1 cut(s) 531
SstI GAGCTC 1 cut(s) 381
StyD4I CCNGG 2 cut(s) 131, 146
TaaI ACNGT 4 cut(s) 73, 164, 215, 373
TaiI ACGT 1 cut(s) 285
TaqI TCGA 1 cut(s) 192
TasI AATT 1 cut(s) 4
TfiI GAWTC 3 cut(s) 22, 38, 328
Tru1I TTAA 1 cut(s) 486
Tru9I TTAA 1 cut(s) 486
TseI GCWGC 1 cut(s) 457
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 4
XceI RCATGY 1 cut(s) 506
XspI CTAG 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.