MD02G1145400.v1.1

Component of the anaphase promoting complex cyclosome (APC C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0015965
Physical Location & Seq
Reverse (-)
12017116 .. 12019265
2150 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1145400.v1.1.491

Sequence Viewer

Length: 579 bp
ATGGCGACGGAGTCATCGGAGGGAGAAGAGGATGCGAAGCTGACGGGAGGGCACCAGCTGCTGGTAGTCGACGACGATCTCAGAGAAATGGGCAAGAAGGCTGCTTGGAGCGTCAGCTCCTGCAAGGCCGGCAATGGCGTCTCGTCTCTCCGTGACGACAATCTCGACACCTACTGGCAATCCGACGGTGCGCAGCCTCATTTGGTGAACATTCAATTCCAGAGGAAAGTGAAGCTCCAACTTGTTGTTCTCTATGTGGATTTCAAGCTTGACGAGAGCTATACGCCGTGTAAGATCTCAATCCGAGCCGGCGACGGCTTTCACAACTTGAAGGACATAAAAACTGTGGAGCTTGATAAGCCAACGGGTTGGGTTCATATATCACTGTCTGGAAATGATCCAAGGGAAACTTTTGTCAACACTTTTATGTTGCAAATCTCTGTGTTATCGAATCACCTGAATGGGAGAGACACTCACGTTCGCCAGATCAAAGTTTACGGCCCTCGACCGAACCCTATTCCACATCAGCCGTTTCAGTTTACTTCAAGGGAGTTCATTACCTATTCTACTGTGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000152 GO:0000209 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005680 GO:0006275 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008156 GO:0008283 GO:0009056 GO:0009057 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009987 GO:0010087 GO:0010498 GO:0010556 GO:0010558 GO:0010564 GO:0010604 GO:0010605 GO:0010948 GO:0016567 GO:0016604 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0031145 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031461 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032446 GO:0032502 GO:0032875 GO:0032876 GO:0032991 GO:0036211 GO:0043085 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045786 GO:0045934 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051438 GO:0051443 GO:0051603 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0070979 GO:0071704 GO:0080090 GO:0090329 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1903320 GO:1903322 GO:1904666 GO:1904668 GO:1990234 GO:2000104 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166
Pfam Domains
Protein Families
ANAPC10

Protein Analysis

193

Amino Acids

21.67

Weight (kDa)

6.37

Isoelectric Point (pI)

25.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANAPC10 PF03256 19 - 189 1.2e-75 Anaphase-promoting complex, subunit 10 (APC10)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015965)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18290
fragaria_vesca FvH4_1g13080 FvH4_1g13080 FvH4_5g29620
malus_domestica MD02G1145400.v1.1
prunus_persica Prupe.7G156300_v2.0.a1
pyrus_communis pycom02g11510
rosa_chinensis RchiOBHm_Chr2g0101251
rosa_laevigata RLG00000017065
rosa_multiflora Rmu_sc0006314.1_g000017
rosa_roxburghii Rroxscaffold_2G00141460
rosa_rugosa Rorug02G0099700 Rorug02G0099800
rosa_samantha Rh2CG151300
rosa_wichuraiana Rw2G011350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 192
AccB1I GGYRCC 1 cut(s) 51
AccB7I CCANNNNNTGG 1 cut(s) 61
AccI GTMKAC 1 cut(s) 69
AclWI GGATC 1 cut(s) 392
AcyI GRCGYC 1 cut(s) 138
AfiI CCNNNNNNNGG 1 cut(s) 61
AgsI TTSAA 4 cut(s) 215, 265, 331, 546
AjuI GAANNNNNNNTTGG 2 cut(s) 231, 263
AluBI AGCT 7 cut(s) 40, 58, 117, 235, 268, 279, 352
AluI AGCT 7 cut(s) 40, 58, 117, 235, 268, 279, 352
Alw26I GTCTC 3 cut(s) 145, 150, 462
AlwI GGATC 1 cut(s) 392
AlwNI CAGNNNCTG 2 cut(s) 61, 120
AoxI GGCC 2 cut(s) 126, 499
ApeKI GCWGC 3 cut(s) 58, 101, 193
AspLEI GCGC 1 cut(s) 193
AspS9I GGNCC 1 cut(s) 500
AsuHPI GGTGA 2 cut(s) 217, 446
BaeGI GKGCMC 1 cut(s) 54
BanI GGYRCC 1 cut(s) 51
BbvI GCAGC 3 cut(s) 45, 88, 205
BceAI ACGGC 4 cut(s) 271, 331, 514, 514
BcoDI GTCTC 3 cut(s) 145, 150, 462
BglII AGATCT 1 cut(s) 294
BisI GCNGC 3 cut(s) 59, 102, 194
BlsI GCNGC 3 cut(s) 60, 103, 195
BmgT120I GGNCC 1 cut(s) 500
BmiI GGNNCC 1 cut(s) 53
BmsI GCATC 1 cut(s) 22
BplI GAGNNNNNCTC 2 cut(s) 457, 489
BsaBI GATNNNNATC 1 cut(s) 299
BsaHI GRCGYC 1 cut(s) 138
BsaJI CCNNGG 1 cut(s) 401
Bsc4I CCNNNNNNNGG 1 cut(s) 61
Bse118I RCCGGY 2 cut(s) 128, 308
Bse1I ACTGG 1 cut(s) 179
Bse3DI GCAATG 1 cut(s) 139
Bse8I GATNNNNATC 1 cut(s) 299
BseDI CCNNGG 1 cut(s) 401
BseGI GGATG 1 cut(s) 37
BseJI GATNNNNATC 1 cut(s) 299
BseLI CCNNNNNNNGG 1 cut(s) 61
BseMI GCAATG 1 cut(s) 139
BseMII CTCAG 1 cut(s) 94
BseNI ACTGG 1 cut(s) 179
BseSI GKGCMC 1 cut(s) 54
BseXI GCAGC 3 cut(s) 45, 88, 205
Bsh1285I CGRYCG 1 cut(s) 509
BshFI GGCC 2 cut(s) 128, 501
BshNI GGYRCC 1 cut(s) 51
BsiEI CGRYCG 1 cut(s) 509
BsiSI CCGG 2 cut(s) 129, 309
BslI CCNNNNNNNGG 1 cut(s) 61
BsmAI GTCTC 3 cut(s) 145, 150, 462
BsmBI CGTCTC 2 cut(s) 145, 150
BsnI GGCC 2 cut(s) 128, 501
Bsp1286I GDGCHC 1 cut(s) 54
Bsp143I GATC 4 cut(s) 76, 294, 397, 486
BspANI GGCC 2 cut(s) 128, 501
BspCNI CTCAG 1 cut(s) 93
BspLI GGNNCC 1 cut(s) 53
BspPI GGATC 1 cut(s) 392
BspT107I GGYRCC 1 cut(s) 51
BsrDI GCAATG 1 cut(s) 139
BsrFI RCCGGY 2 cut(s) 128, 308
BsrI ACTGG 1 cut(s) 179
BssAI RCCGGY 2 cut(s) 128, 308
BssECI CCNNGG 1 cut(s) 401
BssMI GATC 4 cut(s) 76, 294, 397, 486
BssNI GRCGYC 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 401
Bst4CI ACNGT 4 cut(s) 188, 346, 387, 571
Bst6I CTCTTC 1 cut(s) 21
BstACI GRCGYC 1 cut(s) 138
BstAPI GCANNNNNTGC 1 cut(s) 58
BstC8I GCNNGC 2 cut(s) 130, 310
BstDEI CTNAG 1 cut(s) 80
BstF5I GGATG 1 cut(s) 37
BstHHI GCGC 1 cut(s) 193
BstKTI GATC 4 cut(s) 79, 297, 400, 489
BstMAI GTCTC 3 cut(s) 145, 150, 462
BstMBI GATC 4 cut(s) 76, 294, 397, 486
BstMCI CGRYCG 1 cut(s) 509
BstMWI GCNNNNNNNGC 3 cut(s) 58, 129, 358
BstSLI GKGCMC 1 cut(s) 54
BstV1I GCAGC 3 cut(s) 45, 88, 205
BstX2I RGATCY 1 cut(s) 294
BstXI CCANNNNNNTGG 1 cut(s) 369
BstYI RGATCY 1 cut(s) 294
BsuRI GGCC 2 cut(s) 128, 501
BtsCI GGATG 1 cut(s) 37
BtsIMutI CAGTG 1 cut(s) 383
Cac8I GCNNGC 2 cut(s) 130, 310
CaiI CAGNNNCTG 2 cut(s) 61, 120
CfoI GCGC 1 cut(s) 193
Cfr10I RCCGGY 2 cut(s) 128, 308
Cfr13I GGNCC 1 cut(s) 500
CseI GACGC 2 cut(s) 100, 127
DdeI CTNAG 1 cut(s) 80
DpnI GATC 4 cut(s) 78, 296, 399, 488
DpnII GATC 4 cut(s) 76, 294, 397, 486
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
Eco130I CCWWGG 1 cut(s) 401
EcoT14I CCWWGG 1 cut(s) 401
ErhI CCWWGG 1 cut(s) 401
Esp3I CGTCTC 2 cut(s) 145, 150
FaiI YATR 6 cut(s) 255, 282, 338, 378, 380, 428
FalI AAGNNNNNCTT 2 cut(s) 394, 426
FblI GTMKAC 1 cut(s) 69
Fnu4HI GCNGC 3 cut(s) 59, 102, 194
FokI GGATG 1 cut(s) 44
Fsp4HI GCNGC 3 cut(s) 59, 102, 194
FspI TGCGCA 1 cut(s) 192
GlaI GCGC 1 cut(s) 192
GluI GCNGC 3 cut(s) 59, 102, 194
HaeIII GGCC 2 cut(s) 128, 501
HapII CCGG 2 cut(s) 129, 309
HgaI GACGC 2 cut(s) 100, 127
HhaI GCGC 1 cut(s) 193
Hin1I GRCGYC 1 cut(s) 138
Hin6I GCGC 1 cut(s) 191
HinP1I GCGC 1 cut(s) 191
HincII GTYRAC 2 cut(s) 70, 418
HindII GTYRAC 2 cut(s) 70, 418
HindIII AAGCTT 1 cut(s) 266
HinfI GANTC 2 cut(s) 11, 451
HpaII CCGG 2 cut(s) 129, 309
HphI GGTGA 2 cut(s) 217, 446
Hpy166II GTNNAC 5 cut(s) 70, 208, 418, 496, 540
Hpy188I TCNGA 4 cut(s) 19, 83, 184, 305
Hpy188III TCNNGA 3 cut(s) 164, 220, 390
Hpy8I GTNNAC 5 cut(s) 70, 208, 418, 496, 540
Hpy99I CGWCG 5 cut(s) 10, 74, 77, 188, 317
HpyAV CCTTC 2 cut(s) 91, 325
HpyCH4III ACNGT 4 cut(s) 188, 346, 387, 571
HpyCH4IV ACGT 1 cut(s) 477
HpyCH4V TGCA 2 cut(s) 123, 433
HpyF10VI GCNNNNNNNGC 3 cut(s) 58, 129, 358
HpyF3I CTNAG 1 cut(s) 80
HpySE526I ACGT 1 cut(s) 477
Hsp92I GRCGYC 1 cut(s) 138
HspAI GCGC 1 cut(s) 191
KroI GCCGGC 2 cut(s) 128, 308
KroNI GCCGGC 2 cut(s) 130, 310
Kzo9I GATC 4 cut(s) 76, 294, 397, 486
LmnI GCTCC 4 cut(s) 108, 122, 240, 349
Lsp1109I GCAGC 3 cut(s) 45, 88, 205
LweI GCATC 1 cut(s) 22
MaeII ACGT 1 cut(s) 477
MaeIII GTNAC 1 cut(s) 152
MalI GATC 4 cut(s) 78, 296, 399, 488
MboI GATC 4 cut(s) 76, 294, 397, 486
MboII GAAGA 1 cut(s) 38
MflI RGATCY 1 cut(s) 294
MhlI GDGCHC 1 cut(s) 54
MluCI AATT 1 cut(s) 215
MlyI GAGTC 1 cut(s) 20
MmeI TCCRAC 2 cut(s) 207, 262
MnlI CCTC 6 cut(s) 13, 22, 41, 207, 216, 513
MroNI GCCGGC 2 cut(s) 128, 308
MslI CAYNNNNRTG 2 cut(s) 425, 459
MspA1I CMGCKG 1 cut(s) 58
MspI CCGG 2 cut(s) 129, 309
MwoI GCNNNNNNNGC 3 cut(s) 58, 129, 358
NaeI GCCGGC 2 cut(s) 130, 310
NdeII GATC 4 cut(s) 76, 294, 397, 486
NgoMIV GCCGGC 2 cut(s) 128, 308
NlaIV GGNNCC 1 cut(s) 53
NmuCI GTSAC 1 cut(s) 152
NsbI TGCGCA 1 cut(s) 192
PcsI WCGNNNNNNNCGW 1 cut(s) 162
PdiI GCCGGC 2 cut(s) 130, 310
PfeI GAWTC 1 cut(s) 451
PflFI GACNNNGTC 1 cut(s) 10
PflMI CCANNNNNTGG 1 cut(s) 61
PkrI GCNGC 3 cut(s) 60, 103, 195
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
PspN4I GGNNCC 1 cut(s) 53
PspPI GGNCC 1 cut(s) 500
PstNI CAGNNNCTG 2 cut(s) 61, 120
PsuI RGATCY 1 cut(s) 294
PsyI GACNNNGTC 1 cut(s) 10
PvuII CAGCTG 1 cut(s) 58
RseI CAYNNNNRTG 2 cut(s) 425, 459
SalI GTCGAC 1 cut(s) 68
SatI GCNGC 3 cut(s) 59, 102, 194
Sau3AI GATC 4 cut(s) 76, 294, 397, 486
Sau96I GGNCC 1 cut(s) 500
SchI GAGTC 1 cut(s) 20
SduI GDGCHC 1 cut(s) 54
SfaNI GCATC 1 cut(s) 22
SmiMI CAYNNNNRTG 2 cut(s) 425, 459
Sse9I AATT 1 cut(s) 215
StyI CCWWGG 1 cut(s) 401
TaaI ACNGT 4 cut(s) 188, 346, 387, 571
TaiI ACGT 1 cut(s) 480
TaqI TCGA 4 cut(s) 69, 165, 449, 505
TaqII GACCGA 1 cut(s) 523
TasI AATT 1 cut(s) 215
TfiI GAWTC 1 cut(s) 451
TscAI CASTG 1 cut(s) 390
TseFI GTSAC 1 cut(s) 152
TseI GCWGC 3 cut(s) 58, 101, 193
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 2 cut(s) 365, 544
TspGWI ACGGA 2 cut(s) 23, 140
TspRI CASTG 1 cut(s) 390
Tth111I GACNNNGTC 1 cut(s) 10
Van91I CCANNNNNTGG 1 cut(s) 61
XmiI GTMKAC 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.