Rorug02G0099700

Component of the anaphase promoting complex cyclosome (APC C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0015965
Physical Location & Seq
Reverse (-)
8483642 .. 8484576
935 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0099700.1

Sequence Viewer

Length: 312 bp
ATGACCACGGAAAACGCCCTCCCCGAGCCAGGCCTCGCAATCCCCATCGCCGTCGAGCAAGACCCATGGCGCCGTCGATCGAATAAGCCAATTGCGGGGATCAGTAAATCAACCTATGCCGCACGACCATCGCCCCAACCACCATCCCAGCCCAACCATCTGATGAACATGAGAGAATCCCTTAGACGAAATCCTTGGGCAGTAGATCTCTCGTCCGGCAGCAACCCAAAGACGACGGCGAGGTCGGAGGCCAAGCCGGACATCCTGGCGCCGCCGGATGAGAATAAGTTGCAAGCGGAGAGACCGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000152 GO:0000209 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005680 GO:0006275 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008156 GO:0008283 GO:0009056 GO:0009057 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009987 GO:0010087 GO:0010498 GO:0010556 GO:0010558 GO:0010564 GO:0010604 GO:0010605 GO:0010948 GO:0016567 GO:0016604 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0031145 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031461 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032446 GO:0032502 GO:0032875 GO:0032876 GO:0032991 GO:0036211 GO:0043085 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045786 GO:0045934 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051438 GO:0051443 GO:0051603 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0070979 GO:0071704 GO:0080090 GO:0090329 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1903320 GO:1903322 GO:1904666 GO:1904668 GO:1990234 GO:2000104 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166
Pfam Domains
Protein Families
ANAPC10

Protein Analysis

103

Amino Acids

11.32

Weight (kDa)

9.69

Isoelectric Point (pI)

83.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015965)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18290
fragaria_vesca FvH4_1g13080 FvH4_1g13080 FvH4_5g29620
malus_domestica MD02G1145400.v1.1
prunus_persica Prupe.7G156300_v2.0.a1
pyrus_communis pycom02g11510
rosa_chinensis RchiOBHm_Chr2g0101251
rosa_laevigata RLG00000017065
rosa_multiflora Rmu_sc0006314.1_g000017
rosa_roxburghii Rroxscaffold_2G00141460
rosa_rugosa Rorug02G0099700 Rorug02G0099800
rosa_samantha Rh2CG151300
rosa_wichuraiana Rw2G011350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 241
AccB1I GGYRCC 2 cut(s) 69, 268
AciI CCGC 4 cut(s) 95, 120, 272, 296
AclWI GGATC 1 cut(s) 107
AcyI GRCGYC 2 cut(s) 70, 269
AfiI CCNNNNNNNGG 2 cut(s) 29, 95
AjnI CCWGG 2 cut(s) 28, 264
Alw26I GTCTC 1 cut(s) 295
AlwI GGATC 1 cut(s) 107
Ama87I CYCGRG 1 cut(s) 23
AoxI GGCC 3 cut(s) 31, 249, 306
ApeKI GCWGC 1 cut(s) 219
AspLEI GCGC 2 cut(s) 72, 271
AvaI CYCGRG 1 cut(s) 23
BanI GGYRCC 2 cut(s) 69, 268
BbvI GCAGC 1 cut(s) 231
BccI CCATC 4 cut(s) 53, 136, 151, 165
BceAI ACGGC 3 cut(s) 35, 57, 252
BcgI CGANNNNNNTGC 2 cut(s) 111, 145
BciT130I CCWGG 2 cut(s) 30, 266
BcoDI GTCTC 1 cut(s) 295
BfaI CTAG 1 cut(s) 310
BfoI RGCGCY 2 cut(s) 73, 272
BglII AGATCT 1 cut(s) 205
BisI GCNGC 3 cut(s) 120, 220, 272
BlsI GCNGC 3 cut(s) 121, 221, 273
Bme1390I CCNGG 2 cut(s) 30, 266
BmeT110I CYCGRG 1 cut(s) 23
BmiI GGNNCC 2 cut(s) 71, 270
BmrFI CCNGG 2 cut(s) 30, 266
BsaHI GRCGYC 2 cut(s) 70, 269
BsaI GGTCTC 1 cut(s) 295
BsaJI CCNNGG 3 cut(s) 6, 65, 194
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 95
Bse118I RCCGGY 1 cut(s) 304
BseBI CCWGG 2 cut(s) 30, 266
BseDI CCNNGG 3 cut(s) 6, 65, 194
BseGI GGATG 3 cut(s) 143, 261, 283
BseLI CCNNNNNNNGG 2 cut(s) 29, 95
BseXI GCAGC 1 cut(s) 231
BseYI CCCAGC 1 cut(s) 147
Bsh1285I CGRYCG 1 cut(s) 80
BshFI GGCC 3 cut(s) 33, 251, 308
BshNI GGYRCC 2 cut(s) 69, 268
BsiEI CGRYCG 1 cut(s) 80
BsiHKCI CYCGRG 1 cut(s) 23
BsiSI CCGG 4 cut(s) 216, 257, 275, 305
BslI CCNNNNNNNGG 2 cut(s) 29, 95
BsmAI GTCTC 1 cut(s) 295
BsnI GGCC 3 cut(s) 33, 251, 308
Bso31I GGTCTC 1 cut(s) 295
BsoBI CYCGRG 1 cut(s) 23
Bsp143I GATC 3 cut(s) 77, 99, 205
Bsp19I CCATGG 1 cut(s) 65
BspACI CCGC 4 cut(s) 95, 120, 272, 296
BspANI GGCC 3 cut(s) 33, 251, 308
BspLI GGNNCC 2 cut(s) 71, 270
BspPI GGATC 1 cut(s) 107
BspT107I GGYRCC 2 cut(s) 69, 268
BspTNI GGTCTC 1 cut(s) 295
BsrFI RCCGGY 1 cut(s) 304
BssAI RCCGGY 1 cut(s) 304
BssECI CCNNGG 3 cut(s) 6, 65, 194
BssMI GATC 3 cut(s) 77, 99, 205
BssNI GRCGYC 2 cut(s) 70, 269
BssT1I CCWWGG 2 cut(s) 65, 194
Bst2UI CCWGG 2 cut(s) 30, 266
BstACI GRCGYC 2 cut(s) 70, 269
BstC8I GCNNGC 1 cut(s) 294
BstDEI CTNAG 1 cut(s) 182
BstDSI CCRYGG 2 cut(s) 6, 65
BstF5I GGATG 3 cut(s) 143, 261, 283
BstH2I RGCGCY 2 cut(s) 73, 272
BstHHI GCGC 2 cut(s) 72, 271
BstKTI GATC 3 cut(s) 80, 102, 208
BstMAI GTCTC 1 cut(s) 295
BstMBI GATC 3 cut(s) 77, 99, 205
BstMCI CGRYCG 1 cut(s) 80
BstNI CCWGG 2 cut(s) 30, 266
BstSCI CCNGG 2 cut(s) 28, 264
BstV1I GCAGC 1 cut(s) 231
BstX2I RGATCY 1 cut(s) 205
BstYI RGATCY 1 cut(s) 205
BsuRI GGCC 3 cut(s) 33, 251, 308
BtgI CCRYGG 2 cut(s) 6, 65
BtgZI GCGATG 2 cut(s) 31, 114
BtsCI GGATG 3 cut(s) 143, 261, 283
Cac8I GCNNGC 1 cut(s) 294
CfoI GCGC 2 cut(s) 72, 271
Cfr10I RCCGGY 1 cut(s) 304
CviAII CATG 2 cut(s) 66, 169
CviJI RGCY 7 cut(s) 28, 33, 88, 151, 251, 256, 308
CviKI_1 RGCY 7 cut(s) 28, 33, 88, 151, 251, 256, 308
DdeI CTNAG 1 cut(s) 182
DinI GGCGCC 2 cut(s) 71, 270
DpnI GATC 3 cut(s) 79, 101, 207
DpnII GATC 3 cut(s) 77, 99, 205
DrdI GACNNNNNNGTC 1 cut(s) 241
DseDI GACNNNNNNGTC 1 cut(s) 241
Eco130I CCWWGG 2 cut(s) 65, 194
Eco147I AGGCCT 1 cut(s) 33
Eco31I GGTCTC 1 cut(s) 295
Eco88I CYCGRG 1 cut(s) 23
EcoRII CCWGG 2 cut(s) 28, 264
EcoT14I CCWWGG 2 cut(s) 65, 194
EgeI GGCGCC 2 cut(s) 71, 270
EheI GGCGCC 2 cut(s) 71, 270
ErhI CCWWGG 2 cut(s) 65, 194
FaeI CATG 2 cut(s) 69, 172
FaiI YATR 3 cut(s) 67, 117, 170
FatI CATG 2 cut(s) 65, 168
FauI CCCGC 1 cut(s) 88
Fnu4HI GCNGC 3 cut(s) 120, 220, 272
FokI GGATG 3 cut(s) 130, 248, 290
Fsp4HI GCNGC 3 cut(s) 120, 220, 272
FspBI CTAG 1 cut(s) 310
GlaI GCGC 2 cut(s) 71, 270
GluI GCNGC 3 cut(s) 120, 220, 272
GsaI CCCAGC 1 cut(s) 151
HaeII RGCGCY 2 cut(s) 73, 272
HaeIII GGCC 3 cut(s) 33, 251, 308
HapII CCGG 4 cut(s) 216, 257, 275, 305
HhaI GCGC 2 cut(s) 72, 271
Hin1I GRCGYC 2 cut(s) 70, 269
Hin1II CATG 2 cut(s) 69, 172
Hin6I GCGC 2 cut(s) 70, 269
HinP1I GCGC 2 cut(s) 70, 269
HinfI GANTC 1 cut(s) 176
HpaII CCGG 4 cut(s) 216, 257, 275, 305
Hpy188I TCNGA 2 cut(s) 162, 247
Hpy99I CGWCG 3 cut(s) 56, 78, 238
HpyCH4V TGCA 1 cut(s) 292
HpyF3I CTNAG 1 cut(s) 182
Hsp92I GRCGYC 2 cut(s) 70, 269
Hsp92II CATG 2 cut(s) 69, 172
HspAI GCGC 2 cut(s) 70, 269
KasI GGCGCC 2 cut(s) 69, 268
Kzo9I GATC 3 cut(s) 77, 99, 205
LpnPI CCDG 8 cut(s) 15, 42, 161, 229, 251, 270, 278, 288
Lsp1109I GCAGC 1 cut(s) 231
MaeI CTAG 1 cut(s) 310
MalI GATC 3 cut(s) 79, 101, 207
MboI GATC 3 cut(s) 77, 99, 205
MfeI CAATTG 1 cut(s) 90
MflI RGATCY 1 cut(s) 205
MluCI AATT 1 cut(s) 90
Mly113I GGCGCC 2 cut(s) 70, 269
MmeI TCCRAC 1 cut(s) 225
MnlI CCTC 4 cut(s) 29, 44, 234, 241
MspI CCGG 4 cut(s) 216, 257, 275, 305
MspR9I CCNGG 2 cut(s) 30, 266
MunI CAATTG 1 cut(s) 90
MvaI CCWGG 2 cut(s) 30, 266
NarI GGCGCC 2 cut(s) 70, 269
NcoI CCATGG 1 cut(s) 65
NdeII GATC 3 cut(s) 77, 99, 205
NlaIII CATG 2 cut(s) 69, 172
NlaIV GGNNCC 2 cut(s) 71, 270
PceI AGGCCT 1 cut(s) 33
PcsI WCGNNNNNNNCGW 1 cut(s) 21
PfeI GAWTC 1 cut(s) 176
PkrI GCNGC 3 cut(s) 121, 221, 273
Ple19I CGATCG 1 cut(s) 80
PluTI GGCGCC 2 cut(s) 73, 272
Psp6I CCWGG 2 cut(s) 28, 264
PspFI CCCAGC 1 cut(s) 147
PspGI CCWGG 2 cut(s) 28, 264
PspN4I GGNNCC 2 cut(s) 71, 270
PsuI RGATCY 1 cut(s) 205
PvuI CGATCG 1 cut(s) 80
SatI GCNGC 3 cut(s) 120, 220, 272
Sau3AI GATC 3 cut(s) 77, 99, 205
ScrFI CCNGG 2 cut(s) 30, 266
SetI ASST 2 cut(s) 116, 245
SfoI GGCGCC 2 cut(s) 71, 270
Sse9I AATT 1 cut(s) 90
SseBI AGGCCT 1 cut(s) 33
SsiI CCGC 4 cut(s) 95, 120, 272, 296
SspDI GGCGCC 2 cut(s) 69, 268
SspMI CTAG 1 cut(s) 310
StuI AGGCCT 1 cut(s) 33
StyD4I CCNGG 2 cut(s) 28, 264
StyI CCWWGG 2 cut(s) 65, 194
TaqI TCGA 3 cut(s) 54, 76, 80
TasI AATT 1 cut(s) 90
TauI GCSGC 2 cut(s) 122, 274
TfiI GAWTC 1 cut(s) 176
TseI GCWGC 1 cut(s) 219
TspDTI ATGAA 1 cut(s) 179
TspGWI ACGGA 1 cut(s) 23
XspI CTAG 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.