Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009525

Physical Location & Seq

Genomic Coordinates Forward (+)

8183638 .. 8186851

Gene Structure 3214 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G18890.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGAAGTACATTCGAAGCAACAGCTTGAAACGTCTCTTCTCCTTCAAACGACGCAGTTTCGACTCCGACTCCTCAGAAAACTCTTCTCCTCTCGCTGCTTCTTCCACCAAATGCGTCGAGGGTTTTCAAGAAACAGACCAGTTTCAAAGACCCAAATGGAAATGTTTCTCCTTTCAAGAAATCTATGACGCAACCAACGGTTTTAGCTCAGAGAATTTGGTAGGTAGAGGTGGATTTGCAGAGGTGTATAAAGGGATATTGGGTAAAAACGGTGAAGAGATAGCAGTGAAGAGGATAACAAGAGGAGGAAGAGATGATGAGAGGAGAGAGAAAGAGTTTTTAATGGAGATTGGAACAATAGGACATGTCTCACATCCTAATGTCTTGTCTCTTCTTGGTTGTTGTATTGACAATGGTCTCTATCTTGTTTTCATCTTCTCTTCTAGAGGCTCCCTTGCTTCTCTCCTTCATGATTTGAATCAAGCACCATTGGAGTGGGAGACAAGGTATAAGATTGCAATTGGGACAGCAAAAGGGCTTCATTATTTACACAAAGGTTGTCAGAGAAGGATCATACACAGAGACATTAAATCCTCCAATGTTCTCTTAAACCAAGATTTTGAACCACAGATATCTGATTTTGGATTGGCAAAATGGCTGCCTTCTCAATGGTCTCATCATTCCATTGCTCCAATTGAAGGCACATTTGGGCACTTAGCACCAGAGTACTATACACATGGGATTGTGGATGAGAAGACTGATGTGTTTGCCTTTGGAGTGTTCTTGCTTGAACTCATTTCTGGTAAAAAACCTGTTGATGCTTCTCACCAAAGCCTACACAGCTGGGCAAAACTGATAATCAAAGATGGAGAGATTGAGAAGCTGGTGGATCCGAGGATCGGTGAAGAATTTGATCTGCAACAACTTCATCGCATTGCTTTCGCCGCGTCTCTCTGCATCCGATCTTCTTCTCTATGTCGACCTTCCATGATCGAGGTCTTAGAAGTACTACAAGGAGAAGATATAGAGAAAGAGAAATGGAAAATGGAAGAGGAAGAAGAAGTTAAAGAAGAGTTTTGGGGATATGAAGATCTTGAGGATTGTGAATGTGATTCTTCAATCTCACTTTCTCCTCCTGACTCTATCTCTAATAGAAGTTCTTCGCATCGTAGTCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

392

Amino Acids

44.53

Weight (kDa)

5.67

Isoelectric Point (pI)

54.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	69 - 280	1.8e-39	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	71 - 277	1.2e-39	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18890 AT2G18890 AT2G18890
fragaria_vesca	FvH4_4g07970 FvH4_4g07970 FvH4_4g07970 FvH4_4g07970 FvH4_4g07970 FvH4_4g07970 FvH4_4g07970
malus_domestica	MD13G1251500.v1.1
prunus_persica	Prupe.1G084300_v2.0.a1 Prupe.1G084300_v2.0.a1
pyrus_communis	pycom13g22600
rosa_chinensis	RchiOBHm_Chr4g0401711
rosa_laevigata	RLG00000009140
rosa_multiflora	Rmu_sc0001405.1_g000003
rosa_roxburghii	Rroxscaffold_5G00346180
rosa_rugosa	Rorug04G0031300
rosa_samantha	Rh4BG102100 Rh4CG116500
rosa_wichuraiana	Rw4G008810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	979
AccII	CGCG	1 cut(s)	947
AciI	CCGC	1 cut(s)	945
AclWI	GGATC	4 cut(s)	578, 884, 897, 905
AcsI	RAATTY	2 cut(s)	214, 908
AfaI	GTAC	3 cut(s)	8, 728, 1008
AfiI	CCNNNNNNNGG	2 cut(s)	698, 899
AflIII	ACRYGT	1 cut(s)	364
AjuI	GAANNNNNNNTTGG	2 cut(s)	690, 722
AluBI	AGCT	4 cut(s)	24, 207, 843, 883
AluI	AGCT	4 cut(s)	24, 207, 843, 883
Alw26I	GTCTC	8 cut(s)	38, 373, 393, 422, 494, 576, 678, 954
AlwI	GGATC	4 cut(s)	578, 884, 897, 905
ApeKI	GCWGC	2 cut(s)	95, 658
ApoI	RAATTY	2 cut(s)	214, 908
Asp700I	GAANNNNTTC	2 cut(s)	164, 1159
AsuHPI	GGTGA	3 cut(s)	284, 818, 914
AsuII	TTCGAA	1 cut(s)	13
BaeGI	GKGCMC	1 cut(s)	714
BamHI	GGATCC	1 cut(s)	889
BbsI	GAAGAC	1 cut(s)	761
BbvI	GCAGC	2 cut(s)	82, 645
BccI	CCATC	1 cut(s)	860
BcgI	CGANNNNNNTGC	3 cut(s)	922, 956, 1154
BcoDI	GTCTC	8 cut(s)	38, 373, 393, 422, 494, 576, 678, 954
BfaI	CTAG	2 cut(s)	444, 1177
BglII	AGATCT	1 cut(s)	1090
BisI	GCNGC	3 cut(s)	96, 659, 945
BlsI	GCNGC	3 cut(s)	97, 660, 946
BmcAI	AGTACT	2 cut(s)	728, 1008
BmiI	GGNNCC	2 cut(s)	451, 891
BmsI	GCATC	3 cut(s)	808, 966, 1174
BoxI	GACNNNNGTC	1 cut(s)	414
BpiI	GAAGAC	1 cut(s)	761
Bpu14I	TTCGAA	1 cut(s)	13
BpuEI	CTTGAG	1 cut(s)	1115
BsaBI	GATNNNNATC	1 cut(s)	477
BsaI	GGTCTC	2 cut(s)	422, 678
BsaJI	CCNNGG	1 cut(s)	893
BsaXI	ACNNNNNCTCC	4 cut(s)	53, 83, 491, 521
Bsc4I	CCNNNNNNNGG	2 cut(s)	698, 899
Bse1I	ACTGG	1 cut(s)	139
Bse3DI	GCAATG	2 cut(s)	684, 933
Bse8I	GATNNNNATC	1 cut(s)	477
BseDI	CCNNGG	1 cut(s)	893
BseGI	GGATG	3 cut(s)	373, 754, 957
BseJI	GATNNNNATC	1 cut(s)	477
BseLI	CCNNNNNNNGG	2 cut(s)	698, 899
BseMI	GCAATG	2 cut(s)	684, 933
BseMII	CTCAG	2 cut(s)	87, 222
BseNI	ACTGG	1 cut(s)	139
BseRI	GAGGAG	5 cut(s)	61, 78, 318, 337, 1122
BseSI	GKGCMC	1 cut(s)	714
BseXI	GCAGC	2 cut(s)	82, 645
BseYI	CCCAGC	1 cut(s)	843
Bsh1236I	CGCG	1 cut(s)	947
BslFI	GGGAC	1 cut(s)	538
BslI	CCNNNNNNNGG	2 cut(s)	698, 899
BsmAI	GTCTC	8 cut(s)	38, 373, 393, 422, 494, 576, 678, 954
BsmBI	CGTCTC	2 cut(s)	38, 954
BsmFI	GGGAC	1 cut(s)	538
Bso31I	GGTCTC	2 cut(s)	422, 678
Bsp119I	TTCGAA	1 cut(s)	13
Bsp1286I	GDGCHC	1 cut(s)	714
Bsp143I	GATC	7 cut(s)	570, 889, 897, 913, 962, 990, 1090
BspACI	CCGC	1 cut(s)	945
BspCNI	CTCAG	2 cut(s)	86, 221
BspFNI	CGCG	1 cut(s)	947
BspHI	TCATGA	1 cut(s)	469
BspLI	GGNNCC	2 cut(s)	451, 891
BspPI	GGATC	4 cut(s)	578, 884, 897, 905
BspT104I	TTCGAA	1 cut(s)	13
BspTNI	GGTCTC	2 cut(s)	422, 678
BsrDI	GCAATG	2 cut(s)	684, 933
BsrI	ACTGG	1 cut(s)	139
BssECI	CCNNGG	1 cut(s)	893
BssMI	GATC	7 cut(s)	570, 889, 897, 913, 962, 990, 1090
Bst4CI	ACNGT	2 cut(s)	200, 272
Bst6I	CTCTTC	9 cut(s)	41, 88, 270, 284, 304, 396, 445, 1044, 1065
BstBI	TTCGAA	1 cut(s)	13
BstDEI	CTNAG	4 cut(s)	73, 208, 715, 1000
BstF5I	GGATG	3 cut(s)	373, 754, 957
BstFNI	CGCG	1 cut(s)	947
BstKTI	GATC	7 cut(s)	573, 892, 900, 916, 965, 993, 1093
BstMAI	GTCTC	8 cut(s)	38, 373, 393, 422, 494, 576, 678, 954
BstMBI	GATC	7 cut(s)	570, 889, 897, 913, 962, 990, 1090
BstMWI	GCNNNNNNNGC	2 cut(s)	840, 944
BstNSI	RCATGY	1 cut(s)	368
BstPAI	GACNNNNGTC	1 cut(s)	414
BstSLI	GKGCMC	1 cut(s)	714
BstUI	CGCG	1 cut(s)	947
BstV1I	GCAGC	2 cut(s)	82, 645
BstV2I	GAAGAC	1 cut(s)	761
BstX2I	RGATCY	2 cut(s)	889, 1090
BstXI	CCANNNNNNTGG	1 cut(s)	495
BstYI	RGATCY	2 cut(s)	889, 1090
BtgZI	GCGATG	1 cut(s)	914
BtsCI	GGATG	3 cut(s)	373, 754, 957
BtsI	GCAGTG	1 cut(s)	291
BtsIMutI	CAGTG	1 cut(s)	291
CciI	TCATGA	1 cut(s)	469
CseI	GACGC	4 cut(s)	60, 103, 197, 936
Csp6I	GTAC	3 cut(s)	7, 727, 1007
CviAII	CATG	4 cut(s)	365, 470, 737, 988
CviJI	RGCY	8 cut(s)	24, 207, 450, 538, 658, 834, 843, 883
CviKI_1	RGCY	8 cut(s)	24, 207, 450, 538, 658, 834, 843, 883
CviQI	GTAC	3 cut(s)	7, 727, 1007
DdeI	CTNAG	4 cut(s)	73, 208, 715, 1000
DpnI	GATC	7 cut(s)	572, 891, 899, 915, 964, 992, 1092
DpnII	GATC	7 cut(s)	570, 889, 897, 913, 962, 990, 1090
Eam1104I	CTCTTC	9 cut(s)	41, 88, 270, 284, 304, 396, 445, 1044, 1065
EarI	CTCTTC	9 cut(s)	41, 88, 270, 284, 304, 396, 445, 1044, 1065
Eco31I	GGTCTC	2 cut(s)	422, 678
Eco32I	GATATC	1 cut(s)	633
EcoRV	GATATC	1 cut(s)	633
Esp3I	CGTCTC	2 cut(s)	38, 954
FaeI	CATG	4 cut(s)	368, 473, 740, 991
FaqI	GGGAC	1 cut(s)	538
FatI	CATG	4 cut(s)	364, 469, 736, 987
FblI	GTMKAC	1 cut(s)	979
Fnu4HI	GCNGC	3 cut(s)	96, 659, 945
FokI	GGATG	3 cut(s)	360, 761, 944
Fsp4HI	GCNGC	3 cut(s)	96, 659, 945
FspBI	CTAG	2 cut(s)	444, 1177
GluI	GCNGC	3 cut(s)	96, 659, 945
GsaI	CCCAGC	1 cut(s)	847
HgaI	GACGC	4 cut(s)	60, 103, 197, 936
Hin1II	CATG	4 cut(s)	368, 473, 740, 991
HincII	GTYRAC	1 cut(s)	980
HindII	GTYRAC	1 cut(s)	980
HinfI	GANTC	5 cut(s)	62, 68, 478, 1112, 1139
HphI	GGTGA	3 cut(s)	284, 818, 914
Hpy166II	GTNNAC	1 cut(s)	980
Hpy188I	TCNGA	7 cut(s)	67, 76, 211, 564, 637, 894, 962
Hpy188III	TCNNGA	6 cut(s)	128, 176, 444, 470, 1094, 1136
Hpy8I	GTNNAC	1 cut(s)	980
Hpy99I	CGWCG	2 cut(s)	54, 119
HpyAV	CCTTC	6 cut(s)	52, 476, 561, 672, 692, 993
HpyCH4III	ACNGT	2 cut(s)	200, 272
HpyCH4IV	ACGT	1 cut(s)	31
HpyCH4V	TGCA	4 cut(s)	239, 518, 919, 957
HpyF10VI	GCNNNNNNNGC	2 cut(s)	840, 944
HpyF3I	CTNAG	4 cut(s)	73, 208, 715, 1000
HpySE526I	ACGT	1 cut(s)	31
Hsp92II	CATG	4 cut(s)	368, 473, 740, 991
Kzo9I	GATC	7 cut(s)	570, 889, 897, 913, 962, 990, 1090
LmnI	GCTCC	2 cut(s)	455, 694
LpnPI	CCDG	7 cut(s)	152, 735, 786, 825, 829, 869, 1149
Lsp1109I	GCAGC	2 cut(s)	82, 645
LweI	GCATC	3 cut(s)	808, 966, 1174
MaeI	CTAG	2 cut(s)	444, 1177
MaeII	ACGT	1 cut(s)	31
MalI	GATC	7 cut(s)	572, 891, 899, 915, 964, 992, 1092
MboI	GATC	7 cut(s)	570, 889, 897, 913, 962, 990, 1090
MfeI	CAATTG	2 cut(s)	519, 693
MflI	RGATCY	2 cut(s)	889, 1090
MhlI	GDGCHC	1 cut(s)	714
MluCI	AATT	4 cut(s)	214, 519, 693, 908
MlyI	GAGTC	3 cut(s)	56, 62, 1133
MmeI	TCCRAC	1 cut(s)	90
MroXI	GAANNNNTTC	2 cut(s)	164, 1159
MseI	TTAA	4 cut(s)	341, 588, 608, 1065
MslI	CAYNNNNRTG	2 cut(s)	378, 493
MspA1I	CMGCKG	1 cut(s)	843
MunI	CAATTG	2 cut(s)	519, 693
MvnI	CGCG	1 cut(s)	947
MwoI	GCNNNNNNNGC	2 cut(s)	840, 944
NdeII	GATC	7 cut(s)	570, 889, 897, 913, 962, 990, 1090
NlaIII	CATG	4 cut(s)	368, 473, 740, 991
NlaIV	GGNNCC	2 cut(s)	451, 891
NspI	RCATGY	1 cut(s)	368
NspV	TTCGAA	1 cut(s)	13
PagI	TCATGA	1 cut(s)	469
PciI	ACATGT	1 cut(s)	364
PdmI	GAANNNNTTC	2 cut(s)	164, 1159
PfeI	GAWTC	2 cut(s)	478, 1112
PkrI	GCNGC	3 cut(s)	97, 660, 946
PleI	GAGTC	3 cut(s)	56, 62, 1133
PpsI	GAGTC	3 cut(s)	56, 62, 1133
PscI	ACATGT	1 cut(s)	364
PshAI	GACNNNNGTC	1 cut(s)	414
PspFI	CCCAGC	1 cut(s)	843
PspN4I	GGNNCC	2 cut(s)	451, 891
PsuI	RGATCY	2 cut(s)	889, 1090
PvuII	CAGCTG	1 cut(s)	843
RsaI	GTAC	3 cut(s)	8, 728, 1008
RsaNI	GTAC	3 cut(s)	7, 727, 1007
RseI	CAYNNNNRTG	2 cut(s)	378, 493
SalI	GTCGAC	1 cut(s)	978
SaqAI	TTAA	4 cut(s)	341, 588, 608, 1065
SatI	GCNGC	3 cut(s)	96, 659, 945
Sau3AI	GATC	7 cut(s)	570, 889, 897, 913, 962, 990, 1090
ScaI	AGTACT	2 cut(s)	728, 1008
SchI	GAGTC	3 cut(s)	56, 62, 1133
SduI	GDGCHC	1 cut(s)	714
SfaNI	GCATC	3 cut(s)	808, 966, 1174
SfuI	TTCGAA	1 cut(s)	13
SmiMI	CAYNNNNRTG	2 cut(s)	378, 493
SmlI	CTYRAG	1 cut(s)	1094
SmoI	CTYRAG	1 cut(s)	1094
Sse9I	AATT	4 cut(s)	214, 519, 693, 908
SsiI	CCGC	1 cut(s)	945
SspMI	CTAG	2 cut(s)	444, 1177
TaaI	ACNGT	2 cut(s)	200, 272
TaiI	ACGT	1 cut(s)	34
TaqI	TCGA	5 cut(s)	13, 60, 117, 979, 993
TasI	AATT	4 cut(s)	214, 519, 693, 908
TatI	WGTACW	3 cut(s)	6, 726, 1006
TauI	GCSGC	1 cut(s)	947
TfiI	GAWTC	2 cut(s)	478, 1112
Tru1I	TTAA	4 cut(s)	341, 588, 608, 1065
Tru9I	TTAA	4 cut(s)	341, 588, 608, 1065
TscAI	CASTG	1 cut(s)	291
TseI	GCWGC	2 cut(s)	95, 658
TspDTI	ATGAA	6 cut(s)	17, 421, 458, 530, 917, 1101
TspRI	CASTG	1 cut(s)	291
XapI	RAATTY	2 cut(s)	214, 908
XbaI	TCTAGA	1 cut(s)	443
XceI	RCATGY	1 cut(s)	368
XmiI	GTMKAC	1 cut(s)	979
XmnI	GAANNNNTTC	2 cut(s)	164, 1159
XspI	CTAG	2 cut(s)	444, 1177
ZrmI	AGTACT	2 cut(s)	728, 1008

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.