Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0009525

Physical Location & Seq

Genomic Coordinates Forward (+)

4581449 .. 4583316

Gene Structure 1868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0031300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGACCTTCGTCCCAGACAGAGGGAGTTCTTCATTGGCTTCACAAAGGGCCAGCTCTGCTGATCTCCAAAAGCCAGCTGAACTGGATGGGAAGGCATGTGCAGCTGTTGGACAGCCTGATCTGATGGCTCTCTTGAAGTCCGTGTTTAGTGAGGATGTGACACAAGCTCAGTGTCTTGTCACAGAAAGTGACTTTAGGGGTAAAGATTTTCAAAGGCAGCTGAAAGAAACGGTCGATCACTTGCTGTCTTTAAAGACTATACCTATCTTCAATGAAAATTATGCAGTTAGTACCAGAACAAATTTATGTGAGGATTCTTCTTGTTTATTTTGGGACAATGACAGTTTGGCAGCTATACTAGCTAAGGAGCTAAAGGCTGATCTTCTTATCCTTATGAGTGATGTGGAGGGTCTCTACAGTGGGCCTCCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

144

Amino Acids

15.7

Weight (kDa)

4.62

Isoelectric Point (pI)

37.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_kinase	PF00696	31 - 144	9.6e-19	Amino acid kinase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18890 AT2G18890 AT2G18890
fragaria_vesca	FvH4_4g07970 FvH4_4g07970 FvH4_4g07970 FvH4_4g07970 FvH4_4g07970 FvH4_4g07970 FvH4_4g07970
malus_domestica	MD13G1251500.v1.1
prunus_persica	Prupe.1G084300_v2.0.a1 Prupe.1G084300_v2.0.a1
pyrus_communis	pycom13g22600
rosa_chinensis	RchiOBHm_Chr4g0401711
rosa_laevigata	RLG00000009140
rosa_multiflora	Rmu_sc0001405.1_g000003
rosa_roxburghii	Rroxscaffold_5G00346180
rosa_rugosa	Rorug04G0031300
rosa_samantha	Rh4BG102100 Rh4CG116500
rosa_wichuraiana	Rw4G008810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	301
AfaI	GTAC	1 cut(s)	292
AfiI	CCNNNNNNNGG	1 cut(s)	20
AgsI	TTSAA	3 cut(s)	136, 212, 271
AluBI	AGCT	8 cut(s)	54, 77, 104, 167, 220, 353, 362, 370
AluI	AGCT	8 cut(s)	54, 77, 104, 167, 220, 353, 362, 370
Alw26I	GTCTC	1 cut(s)	416
AoxI	GGCC	2 cut(s)	48, 422
ApeKI	GCWGC	3 cut(s)	101, 217, 350
ApoI	RAATTY	1 cut(s)	301
AspS9I	GGNCC	2 cut(s)	48, 422
BbvI	GCAGC	3 cut(s)	113, 229, 362
BccI	CCATC	2 cut(s)	80, 118
BcoDI	GTCTC	1 cut(s)	416
BfaI	CTAG	1 cut(s)	359
BfmI	CTRYAG	1 cut(s)	415
BisI	GCNGC	3 cut(s)	102, 218, 351
BlsI	GCNGC	3 cut(s)	103, 219, 352
BmgT120I	GGNCC	2 cut(s)	48, 422
BoxI	GACNNNNGTC	1 cut(s)	8
Bpu10I	CCTNAGC	1 cut(s)	363
BsaI	GGTCTC	1 cut(s)	416
Bsc4I	CCNNNNNNNGG	1 cut(s)	20
Bse1I	ACTGG	1 cut(s)	87
BseGI	GGATG	2 cut(s)	91, 160
BseLI	CCNNNNNNNGG	1 cut(s)	20
BseMII	CTCAG	1 cut(s)	182
BseNI	ACTGG	1 cut(s)	87
BseXI	GCAGC	3 cut(s)	113, 229, 362
BsgI	GTGCAG	1 cut(s)	120
Bsh1285I	CGRYCG	1 cut(s)	234
BshFI	GGCC	2 cut(s)	50, 424
BsiEI	CGRYCG	1 cut(s)	234
BslFI	GGGAC	1 cut(s)	347
BslI	CCNNNNNNNGG	1 cut(s)	20
BsmAI	GTCTC	1 cut(s)	416
BsmFI	GGGAC	1 cut(s)	347
BsnI	GGCC	2 cut(s)	50, 424
Bso31I	GGTCTC	1 cut(s)	416
Bsp143I	GATC	4 cut(s)	61, 118, 235, 379
BspANI	GGCC	2 cut(s)	50, 424
BspCNI	CTCAG	1 cut(s)	181
BspTNI	GGTCTC	1 cut(s)	416
BsrI	ACTGG	1 cut(s)	87
BssMI	GATC	4 cut(s)	61, 118, 235, 379
Bst4CI	ACNGT	3 cut(s)	232, 344, 419
BstC8I	GCNNGC	2 cut(s)	52, 75
BstDEI	CTNAG	2 cut(s)	168, 363
BstF5I	GGATG	2 cut(s)	91, 160
BstKTI	GATC	4 cut(s)	64, 121, 238, 382
BstMAI	GTCTC	1 cut(s)	416
BstMBI	GATC	4 cut(s)	61, 118, 235, 379
BstMCI	CGRYCG	1 cut(s)	234
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 101, 359
BstNSI	RCATGY	1 cut(s)	99
BstPAI	GACNNNNGTC	1 cut(s)	8
BstSFI	CTRYAG	1 cut(s)	415
BstV1I	GCAGC	3 cut(s)	113, 229, 362
BsuRI	GGCC	2 cut(s)	50, 424
BtsCI	GGATG	2 cut(s)	91, 160
BtsIMutI	CAGTG	2 cut(s)	176, 424
Cac8I	GCNNGC	2 cut(s)	52, 75
Cfr13I	GGNCC	2 cut(s)	48, 422
Csp6I	GTAC	1 cut(s)	291
CviAII	CATG	1 cut(s)	96
CviQI	GTAC	1 cut(s)	291
DdeI	CTNAG	2 cut(s)	168, 363
DpnI	GATC	4 cut(s)	63, 120, 237, 381
DpnII	GATC	4 cut(s)	61, 118, 235, 379
DraI	TTTAAA	1 cut(s)	252
Eco31I	GGTCTC	1 cut(s)	416
FaeI	CATG	1 cut(s)	99
FaiI	YATR	6 cut(s)	97, 260, 282, 307, 356, 395
FaqI	GGGAC	1 cut(s)	347
FatI	CATG	1 cut(s)	95
Fnu4HI	GCNGC	3 cut(s)	102, 218, 351
FokI	GGATG	2 cut(s)	98, 167
Fsp4HI	GCNGC	3 cut(s)	102, 218, 351
FspBI	CTAG	1 cut(s)	359
GluI	GCNGC	3 cut(s)	102, 218, 351
HaeIII	GGCC	2 cut(s)	50, 424
Hin1II	CATG	1 cut(s)	99
HinfI	GANTC	1 cut(s)	314
Hpy188I	TCNGA	1 cut(s)	123
Hpy188III	TCNNGA	1 cut(s)	133
HpyAV	CCTTC	2 cut(s)	16, 85
HpyCH4III	ACNGT	3 cut(s)	232, 344, 419
HpyCH4V	TGCA	2 cut(s)	101, 284
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 101, 359
HpyF3I	CTNAG	2 cut(s)	168, 363
Hsp92II	CATG	1 cut(s)	99
Kzo9I	GATC	4 cut(s)	61, 118, 235, 379
LmnI	GCTCC	1 cut(s)	367
LpnPI	CCDG	6 cut(s)	27, 64, 68, 87, 129, 307
Lsp1109I	GCAGC	3 cut(s)	113, 229, 362
MaeI	CTAG	1 cut(s)	359
MaeIII	GTNAC	3 cut(s)	157, 178, 188
MalI	GATC	4 cut(s)	63, 120, 237, 381
MboI	GATC	4 cut(s)	61, 118, 235, 379
MboII	GAAGA	4 cut(s)	21, 259, 309, 374
MluCI	AATT	2 cut(s)	277, 301
MmeI	TCCRAC	1 cut(s)	88
MnlI	CCTC	5 cut(s)	14, 145, 304, 400, 435
MseI	TTAA	1 cut(s)	251
MspA1I	CMGCKG	3 cut(s)	77, 104, 220
MwoI	GCNNNNNNNGC	3 cut(s)	56, 101, 359
NdeII	GATC	4 cut(s)	61, 118, 235, 379
NlaIII	CATG	1 cut(s)	99
NmuCI	GTSAC	3 cut(s)	157, 178, 188
NspI	RCATGY	1 cut(s)	99
PfeI	GAWTC	1 cut(s)	314
PkrI	GCNGC	3 cut(s)	103, 219, 352
PshAI	GACNNNNGTC	1 cut(s)	8
PspPI	GGNCC	2 cut(s)	48, 422
PvuII	CAGCTG	3 cut(s)	77, 104, 220
RsaI	GTAC	1 cut(s)	292
RsaNI	GTAC	1 cut(s)	291
SaqAI	TTAA	1 cut(s)	251
SatI	GCNGC	3 cut(s)	102, 218, 351
Sau3AI	GATC	4 cut(s)	61, 118, 235, 379
Sau96I	GGNCC	2 cut(s)	48, 422
SfcI	CTRYAG	1 cut(s)	415
Sse9I	AATT	2 cut(s)	277, 301
SspMI	CTAG	1 cut(s)	359
TaaI	ACNGT	3 cut(s)	232, 344, 419
TaqI	TCGA	1 cut(s)	234
TasI	AATT	2 cut(s)	277, 301
TfiI	GAWTC	1 cut(s)	314
Tru1I	TTAA	1 cut(s)	251
Tru9I	TTAA	1 cut(s)	251
TscAI	CASTG	2 cut(s)	176, 424
TseFI	GTSAC	3 cut(s)	157, 178, 188
TseI	GCWGC	3 cut(s)	101, 217, 350
Tsp45I	GTSAC	3 cut(s)	157, 178, 188
TspDTI	ATGAA	2 cut(s)	21, 288
TspGWI	ACGGA	1 cut(s)	130
TspRI	CASTG	2 cut(s)	176, 424
XapI	RAATTY	1 cut(s)	301
XceI	RCATGY	1 cut(s)	99
XspI	CTAG	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.