Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0009525

Physical Location & Seq

Genomic Coordinates Forward (+)

20240944 .. 20244008

Gene Structure 3065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g22600.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGAAATACATTAGAACAAACAGCCTGAAAAGGCTCTTCTCCCTCAAATGGAGAAGTCTAGAGGAACCCACAAGCCCCAATGGCTCCAAAGGCGAAGAAAACAATGAAATCCTGAAGAATGTTGAAGCAGAAGAGCCTTCTCCAAGACCCACTTGGAAATGTTTCTCCTATGAAGAGATTTCTGATGCCACAAATGCTTTCAGCTCAGACAATCTGGTTGGGAAAGGAGGGTATGCACAAGTGTACAGAGGAATTCTAGAAAATGGTGCGGAGATTGCAGTGAAGAGGCTCACAAAAGCTGTGACAGATGAGAGAAAAGAGAAGGAGTTCTTGAATGAGATTGGGACCATTGGACATGTCTGCCACCCAAATGTTCTGTCTCTTGTGGGTTGTTGTATTGACAATGGCCTTTATCTCATCTTCCATTTCTCCTCCAAAGGCTCTGTTGCTTCTCTTCTCCATGATGAGGATTTGCCGCCTATGGATTGGAAAACAAGGTACAAGATAGCTATTGGGACAGCAAGAGGCCTCCATTACTTGCACAAGGGCTGCCAGAGAAGGATAATTCACAGGGACATTAAGTCTACAAATATTCTATTGACTCTGGATTTGGAACCACAGATATCAGATTTTGGTCTGGCAAAATGGCTTCCATCTCAGTGGACTCATCATTCAATTGCTCCAATTGAAGGGACATTTGGGCATTTAGCACCAGAGTACTACATGCATGGGATTGTGGATGAGAAAACCGATGTGTTTGCTTTTGGAGTAATTTTGTTAGAGCTCATCTCAGGGAGGAAACCAGTGGATGGGTCTCACCAAAGCTTACATAGCTGGGCAAAACCAATTTTGAATATTGGGGAGATTGAAAGGCTAGTAGATCCAAGGCTGAGAGGGGCCTATGATGTTACACAGTTGAAAAGACTTGCCTTTGCAGGATCTATGTGCATTAGAGCATCTCCAACATGGCGCCCTTCTATGACCGAGGTATTGGAGGTGATGGAATCAGAAGGGGAAATAGACAAAGAGAGGTGGAAGATGGCAGAAGAAGAAGAAGTAGATGAGTTTTGGGGTTTTGAGGATTTAGAAAATGAATGCAACACTTCCTTCTCAATTTCACCACACGATTCCCTTTCAACACGAAGTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

384

Amino Acids

43.38

Weight (kDa)

5.59

Isoelectric Point (pI)

47.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18890 AT2G18890 AT2G18890
fragaria_vesca	FvH4_4g07970 FvH4_4g07970 FvH4_4g07970 FvH4_4g07970 FvH4_4g07970 FvH4_4g07970 FvH4_4g07970
malus_domestica	MD13G1251500.v1.1
prunus_persica	Prupe.1G084300_v2.0.a1 Prupe.1G084300_v2.0.a1
pyrus_communis	pycom13g22600
rosa_chinensis	RchiOBHm_Chr4g0401711
rosa_laevigata	RLG00000009140
rosa_multiflora	Rmu_sc0001405.1_g000003
rosa_roxburghii	Rroxscaffold_5G00346180
rosa_rugosa	Rorug04G0031300
rosa_samantha	Rh4BG102100 Rh4CG116500
rosa_wichuraiana	Rw4G008810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	969
AccB7I	CCANNNNNTGG	1 cut(s)	809
AccI	GTMKAC	1 cut(s)	584
AciI	CCGC	2 cut(s)	269, 476
AclWI	GGATC	2 cut(s)	875, 946
AcsI	RAATTY	1 cut(s)	252
AcuI	CTGAAG	1 cut(s)	134
AcyI	GRCGYC	1 cut(s)	970
AfaI	GTAC	3 cut(s)	245, 500, 719
AfiI	CCNNNNNNNGG	4 cut(s)	48, 466, 689, 809
AflIII	ACRYGT	1 cut(s)	355
AgsI	TTSAA	8 cut(s)	125, 334, 675, 689, 853, 869, 919, 1137
AhdI	GACNNNNNGTC	1 cut(s)	580
AjuI	GAANNNNNNNTTGG	2 cut(s)	681, 713
AluBI	AGCT	6 cut(s)	204, 299, 509, 784, 825, 834
AluI	AGCT	6 cut(s)	204, 299, 509, 784, 825, 834
Alw21I	GWGCWC	1 cut(s)	786
Alw26I	GTCTC	2 cut(s)	384, 819
AlwI	GGATC	2 cut(s)	875, 946
AoxI	GGCC	3 cut(s)	406, 526, 897
ApeKI	GCWGC	1 cut(s)	549
ApoI	RAATTY	1 cut(s)	252
ArsI	GACNNNNNNTTYG	4 cut(s)	362, 394, 592, 624
Asp700I	GAANNNNTTC	2 cut(s)	161, 326
AspLEI	GCGC	1 cut(s)	972
AspS9I	GGNCC	2 cut(s)	345, 897
AsuHPI	GGTGA	3 cut(s)	809, 1009, 1110
AvaII	GGWCC	1 cut(s)	345
BanI	GGYRCC	1 cut(s)	969
BanII	GRGCYC	1 cut(s)	786
Bbv12I	GWGCWC	1 cut(s)	786
BbvI	GCAGC	1 cut(s)	536
BccI	CCATC	4 cut(s)	661, 803, 994, 1033
BcgI	CGANNNNNNTGC	2 cut(s)	740, 774
BcoDI	GTCTC	2 cut(s)	384, 819
BfaI	CTAG	3 cut(s)	59, 257, 875
BfoI	RGCGCY	1 cut(s)	973
BglI	GCCNNNNNGGC	1 cut(s)	81
BisI	GCNGC	2 cut(s)	476, 550
BlsI	GCNGC	2 cut(s)	477, 551
BmcAI	AGTACT	1 cut(s)	719
Bme18I	GGWCC	1 cut(s)	345
BmeRI	GACNNNNNGTC	1 cut(s)	580
BmgT120I	GGNCC	2 cut(s)	345, 897
BmiI	GGNNCC	6 cut(s)	66, 85, 346, 615, 898, 971
BmsI	GCATC	2 cut(s)	175, 965
BplI	GAGNNNNNCTC	2 cut(s)	773, 805
BsaHI	GRCGYC	1 cut(s)	970
BsaI	GGTCTC	1 cut(s)	819
BsaJI	CCNNGG	2 cut(s)	884, 984
Bsc4I	CCNNNNNNNGG	4 cut(s)	48, 466, 689, 809
Bse1I	ACTGG	1 cut(s)	803
BseDI	CCNNGG	2 cut(s)	884, 984
BseGI	GGATG	2 cut(s)	745, 814
BseLI	CCNNNNNNNGG	4 cut(s)	48, 466, 689, 809
BseMII	CTCAG	4 cut(s)	219, 671, 804, 881
BseNI	ACTGG	1 cut(s)	803
BseRI	GAGGAG	1 cut(s)	421
BseXI	GCAGC	1 cut(s)	536
BseYI	CCCAGC	1 cut(s)	834
BshFI	GGCC	3 cut(s)	408, 528, 899
BshNI	GGYRCC	1 cut(s)	969
BsiHKAI	GWGCWC	1 cut(s)	786
BslFI	GGGAC	4 cut(s)	358, 529, 587, 706
BslI	CCNNNNNNNGG	4 cut(s)	48, 466, 689, 809
BsmAI	GTCTC	2 cut(s)	384, 819
BsmFI	GGGAC	4 cut(s)	358, 529, 587, 706
BsmI	GAATGC	1 cut(s)	1100
BsnI	GGCC	3 cut(s)	408, 528, 899
Bso31I	GGTCTC	1 cut(s)	819
Bsp1286I	GDGCHC	1 cut(s)	786
Bsp1407I	TGTACA	1 cut(s)	243
Bsp143I	GATC	2 cut(s)	880, 938
BspACI	CCGC	2 cut(s)	269, 476
BspANI	GGCC	3 cut(s)	408, 528, 899
BspCNI	CTCAG	4 cut(s)	218, 670, 803, 882
BspLI	GGNNCC	6 cut(s)	66, 85, 346, 615, 898, 971
BspPI	GGATC	2 cut(s)	875, 946
BspQI	GCTCTTC	2 cut(s)	41, 126
BspT107I	GGYRCC	1 cut(s)	969
BspTNI	GGTCTC	1 cut(s)	819
BsrGI	TGTACA	1 cut(s)	243
BsrI	ACTGG	1 cut(s)	803
BssECI	CCNNGG	2 cut(s)	884, 984
BssMI	GATC	2 cut(s)	880, 938
BssNI	GRCGYC	1 cut(s)	970
BssT1I	CCWWGG	1 cut(s)	884
Bst4CI	ACNGT	1 cut(s)	915
Bst6I	CTCTTC	5 cut(s)	41, 126, 168, 278, 459
BstACI	GRCGYC	1 cut(s)	970
BstAUI	TGTACA	1 cut(s)	243
BstDEI	CTNAG	4 cut(s)	205, 657, 790, 890
BstF5I	GGATG	2 cut(s)	745, 814
BstH2I	RGCGCY	1 cut(s)	973
BstHHI	GCGC	1 cut(s)	972
BstKTI	GATC	2 cut(s)	883, 941
BstMAI	GTCTC	2 cut(s)	384, 819
BstMBI	GATC	2 cut(s)	880, 938
BstMWI	GCNNNNNNNGC	5 cut(s)	81, 90, 194, 275, 831
BstNSI	RCATGY	2 cut(s)	359, 727
BstV1I	GCAGC	1 cut(s)	536
BstX2I	RGATCY	2 cut(s)	880, 938
BstXI	CCANNNNNNTGG	1 cut(s)	660
BstYI	RGATCY	2 cut(s)	880, 938
BsuRI	GGCC	3 cut(s)	408, 528, 899
BtsCI	GGATG	2 cut(s)	745, 814
BtsI	GCAGTG	1 cut(s)	285
BtsIMutI	CAGTG	3 cut(s)	285, 665, 810
CfoI	GCGC	1 cut(s)	972
Cfr13I	GGNCC	2 cut(s)	345, 897
Csp6I	GTAC	3 cut(s)	244, 499, 718
CviAII	CATG	5 cut(s)	356, 461, 724, 728, 966
CviQI	GTAC	3 cut(s)	244, 499, 718
DdeI	CTNAG	4 cut(s)	205, 657, 790, 890
DinI	GGCGCC	1 cut(s)	971
DpnI	GATC	2 cut(s)	882, 940
DpnII	GATC	2 cut(s)	880, 938
DriI	GACNNNNNGTC	1 cut(s)	580
Eam1104I	CTCTTC	5 cut(s)	41, 126, 168, 278, 459
Eam1105I	GACNNNNNGTC	1 cut(s)	580
EarI	CTCTTC	5 cut(s)	41, 126, 168, 278, 459
Ecl136II	GAGCTC	1 cut(s)	784
Eco130I	CCWWGG	1 cut(s)	884
Eco147I	AGGCCT	1 cut(s)	528
Eco24I	GRGCYC	1 cut(s)	786
Eco31I	GGTCTC	1 cut(s)	819
Eco32I	GATATC	1 cut(s)	624
Eco47I	GGWCC	1 cut(s)	345
Eco53kI	GAGCTC	1 cut(s)	784
Eco57I	CTGAAG	1 cut(s)	134
EcoICRI	GAGCTC	1 cut(s)	784
EcoO109I	RGGNCCY	1 cut(s)	897
EcoRI	GAATTC	1 cut(s)	252
EcoRV	GATATC	1 cut(s)	624
EcoT14I	CCWWGG	1 cut(s)	884
EcoT22I	ATGCAT	1 cut(s)	729
EcoT38I	GRGCYC	1 cut(s)	786
EgeI	GGCGCC	1 cut(s)	971
EheI	GGCGCC	1 cut(s)	971
ErhI	CCWWGG	1 cut(s)	884
FaeI	CATG	5 cut(s)	359, 464, 727, 731, 969
FalI	AAGNNNNNCTT	4 cut(s)	136, 168, 314, 346
FaqI	GGGAC	4 cut(s)	358, 529, 587, 706
FatI	CATG	5 cut(s)	355, 460, 723, 727, 965
FblI	GTMKAC	1 cut(s)	584
Fnu4HI	GCNGC	2 cut(s)	476, 550
FokI	GGATG	2 cut(s)	752, 821
FriOI	GRGCYC	1 cut(s)	786
Fsp4HI	GCNGC	2 cut(s)	476, 550
FspBI	CTAG	3 cut(s)	59, 257, 875
GlaI	GCGC	1 cut(s)	971
GluI	GCNGC	2 cut(s)	476, 550
GsaI	CCCAGC	1 cut(s)	838
HaeII	RGCGCY	1 cut(s)	973
HaeIII	GGCC	3 cut(s)	408, 528, 899
HhaI	GCGC	1 cut(s)	972
Hin1I	GRCGYC	1 cut(s)	970
Hin1II	CATG	5 cut(s)	359, 464, 727, 731, 969
Hin6I	GCGC	1 cut(s)	970
HinP1I	GCGC	1 cut(s)	970
HindIII	AAGCTT	1 cut(s)	823
HinfI	GANTC	4 cut(s)	601, 664, 1004, 1127
HphI	GGTGA	3 cut(s)	809, 1009, 1110
Hpy166II	GTNNAC	3 cut(s)	244, 585, 663
Hpy188I	TCNGA	4 cut(s)	184, 208, 628, 1009
Hpy188III	TCNNGA	5 cut(s)	59, 112, 257, 331, 605
Hpy8I	GTNNAC	3 cut(s)	244, 585, 663
HpyAV	CCTTC	7 cut(s)	147, 316, 552, 683, 984, 1004, 1117
HpyCH4III	ACNGT	1 cut(s)	915
HpyCH4V	TGCA	7 cut(s)	236, 278, 541, 727, 935, 948, 1098
HpyF10VI	GCNNNNNNNGC	5 cut(s)	81, 90, 194, 275, 831
HpyF3I	CTNAG	4 cut(s)	205, 657, 790, 890
Hsp92I	GRCGYC	1 cut(s)	970
Hsp92II	CATG	5 cut(s)	359, 464, 727, 731, 969
HspAI	GCGC	1 cut(s)	970
KasI	GGCGCC	1 cut(s)	969
Kzo9I	GATC	2 cut(s)	880, 938
LguI	GCTCTTC	2 cut(s)	41, 126
LmnI	GCTCC	2 cut(s)	89, 685
Lsp1109I	GCAGC	1 cut(s)	536
LweI	GCATC	2 cut(s)	175, 965
MaeI	CTAG	3 cut(s)	59, 257, 875
MaeIII	GTNAC	2 cut(s)	301, 907
MalI	GATC	2 cut(s)	882, 940
MboI	GATC	2 cut(s)	880, 938
MfeI	CAATTG	2 cut(s)	675, 684
MflI	RGATCY	2 cut(s)	880, 938
MhlI	GDGCHC	1 cut(s)	786
MluCI	AATT	7 cut(s)	252, 564, 675, 684, 771, 846, 1113
Mly113I	GGCGCC	1 cut(s)	970
MlyI	GAGTC	2 cut(s)	595, 658
MmeI	TCCRAC	1 cut(s)	986
Mph1103I	ATGCAT	1 cut(s)	729
MroXI	GAANNNNTTC	2 cut(s)	161, 326
MseI	TTAA	2 cut(s)	579, 1150
MslI	CAYNNNNRTG	2 cut(s)	369, 658
MunI	CAATTG	2 cut(s)	675, 684
Mva1269I	GAATGC	1 cut(s)	1100
MwoI	GCNNNNNNNGC	5 cut(s)	81, 90, 194, 275, 831
NarI	GGCGCC	1 cut(s)	970
NdeII	GATC	2 cut(s)	880, 938
NlaIII	CATG	5 cut(s)	359, 464, 727, 731, 969
NlaIV	GGNNCC	6 cut(s)	66, 85, 346, 615, 898, 971
NmuCI	GTSAC	1 cut(s)	301
NsiI	ATGCAT	1 cut(s)	729
NspI	RCATGY	2 cut(s)	359, 727
PceI	AGGCCT	1 cut(s)	528
PciI	ACATGT	1 cut(s)	355
PciSI	GCTCTTC	2 cut(s)	41, 126
PctI	GAATGC	1 cut(s)	1100
PdmI	GAANNNNTTC	2 cut(s)	161, 326
PfeI	GAWTC	2 cut(s)	1004, 1127
PflMI	CCANNNNNTGG	1 cut(s)	809
PkrI	GCNGC	2 cut(s)	477, 551
PleI	GAGTC	2 cut(s)	595, 658
PluTI	GGCGCC	1 cut(s)	973
PpsI	GAGTC	2 cut(s)	595, 658
PscI	ACATGT	1 cut(s)	355
Psp124BI	GAGCTC	1 cut(s)	786
PspFI	CCCAGC	1 cut(s)	834
PspN4I	GGNNCC	6 cut(s)	66, 85, 346, 615, 898, 971
PspPI	GGNCC	2 cut(s)	345, 897
PsuI	RGATCY	2 cut(s)	880, 938
RsaI	GTAC	3 cut(s)	245, 500, 719
RsaNI	GTAC	3 cut(s)	244, 499, 718
RseI	CAYNNNNRTG	2 cut(s)	369, 658
SacI	GAGCTC	1 cut(s)	786
SapI	GCTCTTC	2 cut(s)	41, 126
SaqAI	TTAA	2 cut(s)	579, 1150
SatI	GCNGC	2 cut(s)	476, 550
Sau3AI	GATC	2 cut(s)	880, 938
Sau96I	GGNCC	2 cut(s)	345, 897
ScaI	AGTACT	1 cut(s)	719
SchI	GAGTC	2 cut(s)	595, 658
SduI	GDGCHC	1 cut(s)	786
SfaNI	GCATC	2 cut(s)	175, 965
SfoI	GGCGCC	1 cut(s)	971
SinI	GGWCC	1 cut(s)	345
SmiMI	CAYNNNNRTG	2 cut(s)	369, 658
Sse9I	AATT	7 cut(s)	252, 564, 675, 684, 771, 846, 1113
SseBI	AGGCCT	1 cut(s)	528
SsiI	CCGC	2 cut(s)	269, 476
SspDI	GGCGCC	1 cut(s)	969
SspI	AATATT	2 cut(s)	592, 856
SspMI	CTAG	3 cut(s)	59, 257, 875
SstI	GAGCTC	1 cut(s)	786
StuI	AGGCCT	1 cut(s)	528
StyI	CCWWGG	1 cut(s)	884
TaaI	ACNGT	1 cut(s)	915
TaqII	GACCGA	1 cut(s)	998
TasI	AATT	7 cut(s)	252, 564, 675, 684, 771, 846, 1113
TatI	WGTACW	2 cut(s)	243, 717
TauI	GCSGC	1 cut(s)	478
TfiI	GAWTC	2 cut(s)	1004, 1127
Tru1I	TTAA	2 cut(s)	579, 1150
Tru9I	TTAA	2 cut(s)	579, 1150
TscAI	CASTG	3 cut(s)	285, 665, 810
TseFI	GTSAC	1 cut(s)	301
TseI	GCWGC	1 cut(s)	549
Tsp45I	GTSAC	1 cut(s)	301
TspDTI	ATGAA	4 cut(s)	17, 120, 186, 1107
TspRI	CASTG	3 cut(s)	285, 665, 810
Van91I	CCANNNNNTGG	1 cut(s)	809
VpaK11BI	GGWCC	1 cut(s)	345
XapI	RAATTY	1 cut(s)	252
XbaI	TCTAGA	2 cut(s)	58, 256
XceI	RCATGY	2 cut(s)	359, 727
XcmI	CCANNNNNNNNNTGG	1 cut(s)	150
XmiI	GTMKAC	1 cut(s)	584
XmnI	GAANNNNTTC	2 cut(s)	161, 326
XspI	CTAG	3 cut(s)	59, 257, 875
ZrmI	AGTACT	1 cut(s)	719
Zsp2I	ATGCAT	1 cut(s)	729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.