Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0009525

Physical Location & Seq

Genomic Coordinates Reverse (-)

16928269 .. 16931634

Gene Structure 3366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00346180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGAAATACATTAGGACAAACAGCCTGAAAAGGCTATTCTCTCTCAAACGCAGAAGCTTGGGAGAAGTTGCAAGCCCACCAAGTGTGTGCTGTAATGTTGAAGAGAGCAATGAAGGTCTCAAGAATGTTGAAGCAATAGAGCTTTCTCCAAGACCCACATGGAAATGCTTCTCCTTTGAAGAGATTTCAGATGCCACCAATGGTTTCAGCTCAGAGAATTTGGTTGGGAAAGGAGGCTATGCAGAGGTGTATAGAGGTGTTCTGAAAGGTAATGAGGAAATTGCTGTGAAGAGGATCACAAAAACTGTGACTGATGAAAGGAAAGAGAAGGAGTTCCTGAATGAGATTGGAACTATTGGCCATGTTTGTCATCCAAATGTGTTGTCACTTGTGGGTTGTTGCATTGACAATGGCCTTTATCTCATCTTCCATTTCTCCTCCAGAGGCTCTGTTGCTTCTCTACTCCATGATTTTGAACCACAGATATCTGATTTTGGACTAGCAAAATGGCTTCCATCACAATGGACTCATCACTCAATTGCTCCAATTGAAGGGACCTTTGGGCACTTGGCACCTGAGTACTATATGCATGGGATTGTGGATGAGAAAACAGATGTCTTTGCTTTTGGAGTTATTTTATTAGAACTCATCTCAGGCAAGAAACCAGTGGATGGGTCTCACCAAAGCTTACATAGCTGGGCAAAACCAATATTAAACCAGGGAGAGATTGATCAGCTAGTAGATCCAAGGCTTAGAGGGGTCTATGATGTTACACAGCTGAAAAGACTTGCCTTTGCAGGATCTCTCTGCATTCGAGCATCGCCCACATGGCGTCCTACCATGAGCGAGGTGTTGGAGGTTATGGAATTAGAAGGTGAAATAGACAAAGAGAGGTGGAAGATGCCAGAGGAAGAAGAAGAGCATGATGAGTTCTGGGGTTTTGAAGATCTGGAATATGAGTTTGACAGTTCCTTCTCTGTTTCACCGCATGATTCCATTTCTACAAGAAGTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

338

Amino Acids

38.2

Weight (kDa)

5.2

Isoelectric Point (pI)

49.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	70 - 156	1.6e-10	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	72 - 157	2.3e-12	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	160 - 285	1.4e-09	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	161 - 286	2.8e-09	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18890 AT2G18890 AT2G18890
fragaria_vesca	FvH4_4g07970 FvH4_4g07970 FvH4_4g07970 FvH4_4g07970 FvH4_4g07970 FvH4_4g07970 FvH4_4g07970
malus_domestica	MD13G1251500.v1.1
prunus_persica	Prupe.1G084300_v2.0.a1 Prupe.1G084300_v2.0.a1
pyrus_communis	pycom13g22600
rosa_chinensis	RchiOBHm_Chr4g0401711
rosa_laevigata	RLG00000009140
rosa_multiflora	Rmu_sc0001405.1_g000003
rosa_roxburghii	Rroxscaffold_5G00346180
rosa_rugosa	Rorug04G0031300
rosa_samantha	Rh4BG102100 Rh4CG116500
rosa_wichuraiana	Rw4G008810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	571
AccB7I	CCANNNNNTGG	1 cut(s)	671
AciI	CCGC	1 cut(s)	986
AclWI	GGATC	3 cut(s)	302, 737, 808
AcoI	YGGCCR	1 cut(s)	358
AcsI	RAATTY	1 cut(s)	217
AcyI	GRCGYC	1 cut(s)	832
AdeI	CACNNNGTG	1 cut(s)	83
AfaI	GTAC	1 cut(s)	581
AfiI	CCNNNNNNNGG	2 cut(s)	551, 671
AgsI	TTSAA	6 cut(s)	101, 131, 179, 476, 551, 944
AjnI	CCWGG	1 cut(s)	717
AjuI	GAANNNNNNNTTGG	2 cut(s)	543, 575
AluBI	AGCT	7 cut(s)	57, 142, 210, 687, 696, 736, 778
AluI	AGCT	7 cut(s)	57, 142, 210, 687, 696, 736, 778
Alw26I	GTCTC	2 cut(s)	122, 681
AlwI	GGATC	3 cut(s)	302, 737, 808
AoxI	GGCC	2 cut(s)	358, 412
ApoI	RAATTY	1 cut(s)	217
ArsI	GACNNNNNNTTYG	2 cut(s)	368, 400
Asp700I	GAANNNNTTC	2 cut(s)	167, 332
AspS9I	GGNCC	1 cut(s)	555
AsuHPI	GGTGA	3 cut(s)	671, 887, 975
AvaII	GGWCC	1 cut(s)	555
BaeGI	GKGCMC	1 cut(s)	567
BalI	TGGCCA	1 cut(s)	360
BanI	GGYRCC	1 cut(s)	571
BccI	CCATC	2 cut(s)	523, 665
BciT130I	CCWGG	1 cut(s)	719
BclI	TGATCA	1 cut(s)	730
BcoDI	GTCTC	2 cut(s)	122, 681
BfaI	CTAG	2 cut(s)	500, 737
BglI	GCCNNNNNGGC	1 cut(s)	829
BglII	AGATCT	1 cut(s)	946
BmcAI	AGTACT	1 cut(s)	581
Bme1390I	CCNGG	1 cut(s)	719
Bme18I	GGWCC	1 cut(s)	555
BmgT120I	GGNCC	1 cut(s)	555
BmiI	GGNNCC	2 cut(s)	556, 573
BmrFI	CCNGG	1 cut(s)	719
BmsI	GCATC	3 cut(s)	181, 827, 891
BpmI	CTGGAG	1 cut(s)	424
BpuEI	CTTGAG	1 cut(s)	104
BsaHI	GRCGYC	1 cut(s)	832
BsaI	GGTCTC	2 cut(s)	122, 681
BsaJI	CCNNGG	2 cut(s)	718, 746
Bsc4I	CCNNNNNNNGG	2 cut(s)	551, 671
Bse1I	ACTGG	1 cut(s)	665
Bse3DI	GCAATG	1 cut(s)	115
BseBI	CCWGG	1 cut(s)	719
BseDI	CCNNGG	2 cut(s)	718, 746
BseGI	GGATG	3 cut(s)	370, 607, 676
BseLI	CCNNNNNNNGG	2 cut(s)	551, 671
BseMI	GCAATG	1 cut(s)	115
BseMII	CTCAG	3 cut(s)	225, 567, 666
BseNI	ACTGG	1 cut(s)	665
BseRI	GAGGAG	1 cut(s)	427
BseSI	GKGCMC	1 cut(s)	567
BseYI	CCCAGC	1 cut(s)	696
BshFI	GGCC	2 cut(s)	360, 414
BshNI	GGYRCC	1 cut(s)	571
BslFI	GGGAC	1 cut(s)	568
BslI	CCNNNNNNNGG	2 cut(s)	551, 671
BsmAI	GTCTC	2 cut(s)	122, 681
BsmFI	GGGAC	1 cut(s)	568
BsmI	GAATGC	1 cut(s)	810
BsnI	GGCC	2 cut(s)	360, 414
Bso31I	GGTCTC	2 cut(s)	122, 681
Bsp1286I	GDGCHC	1 cut(s)	567
Bsp143I	GATC	5 cut(s)	294, 730, 742, 800, 946
BspACI	CCGC	1 cut(s)	986
BspANI	GGCC	2 cut(s)	360, 414
BspCNI	CTCAG	3 cut(s)	224, 568, 665
BspLI	GGNNCC	2 cut(s)	556, 573
BspPI	GGATC	3 cut(s)	302, 737, 808
BspQI	GCTCTTC	1 cut(s)	912
BspT107I	GGYRCC	1 cut(s)	571
BspTNI	GGTCTC	2 cut(s)	122, 681
BsrDI	GCAATG	1 cut(s)	115
BsrI	ACTGG	1 cut(s)	665
BssECI	CCNNGG	2 cut(s)	718, 746
BssMI	GATC	5 cut(s)	294, 730, 742, 800, 946
BssNI	GRCGYC	1 cut(s)	832
BssT1I	CCWWGG	1 cut(s)	746
Bst2UI	CCWGG	1 cut(s)	719
Bst4CI	ACNGT	2 cut(s)	307, 968
Bst6I	CTCTTC	4 cut(s)	96, 174, 284, 912
BstACI	GRCGYC	1 cut(s)	832
BstC8I	GCNNGC	1 cut(s)	73
BstDEI	CTNAG	4 cut(s)	211, 576, 652, 752
BstF5I	GGATG	3 cut(s)	370, 607, 676
BstKTI	GATC	5 cut(s)	297, 733, 745, 803, 949
BstMAI	GTCTC	2 cut(s)	122, 681
BstMBI	GATC	5 cut(s)	294, 730, 742, 800, 946
BstMWI	GCNNNNNNNGC	2 cut(s)	693, 829
BstNI	CCWGG	1 cut(s)	719
BstSCI	CCNGG	1 cut(s)	717
BstSLI	GKGCMC	1 cut(s)	567
BstX2I	RGATCY	3 cut(s)	742, 800, 946
BstXI	CCANNNNNNTGG	1 cut(s)	522
BstYI	RGATCY	3 cut(s)	742, 800, 946
BsuRI	GGCC	2 cut(s)	360, 414
BtgZI	GCGATG	1 cut(s)	804
BtsCI	GGATG	3 cut(s)	370, 607, 676
BtsIMutI	CAGTG	1 cut(s)	672
Cac8I	GCNNGC	1 cut(s)	73
Cfr13I	GGNCC	1 cut(s)	555
CseI	GACGC	1 cut(s)	821
Csp6I	GTAC	1 cut(s)	580
CviAII	CATG	8 cut(s)	159, 362, 467, 590, 828, 841, 923, 989
CviQI	GTAC	1 cut(s)	580
DdeI	CTNAG	4 cut(s)	211, 576, 652, 752
DpnI	GATC	5 cut(s)	296, 732, 744, 802, 948
DpnII	GATC	5 cut(s)	294, 730, 742, 800, 946
DraIII	CACNNNGTG	1 cut(s)	83
EaeI	YGGCCR	1 cut(s)	358
Eam1104I	CTCTTC	4 cut(s)	96, 174, 284, 912
EarI	CTCTTC	4 cut(s)	96, 174, 284, 912
Eco130I	CCWWGG	1 cut(s)	746
Eco31I	GGTCTC	2 cut(s)	122, 681
Eco32I	GATATC	1 cut(s)	486
Eco47I	GGWCC	1 cut(s)	555
EcoO109I	RGGNCCY	1 cut(s)	555
EcoRII	CCWGG	1 cut(s)	717
EcoRV	GATATC	1 cut(s)	486
EcoT14I	CCWWGG	1 cut(s)	746
EcoT22I	ATGCAT	1 cut(s)	591
ErhI	CCWWGG	1 cut(s)	746
FaeI	CATG	8 cut(s)	162, 365, 470, 593, 831, 844, 926, 992
FaqI	GGGAC	1 cut(s)	568
FatI	CATG	8 cut(s)	158, 361, 466, 589, 827, 840, 922, 988
FbaI	TGATCA	1 cut(s)	730
FokI	GGATG	3 cut(s)	357, 614, 683
FspBI	CTAG	2 cut(s)	500, 737
GsaI	CCCAGC	1 cut(s)	700
GsuI	CTGGAG	1 cut(s)	424
HaeIII	GGCC	2 cut(s)	360, 414
HgaI	GACGC	1 cut(s)	821
Hin1I	GRCGYC	1 cut(s)	832
Hin1II	CATG	8 cut(s)	162, 365, 470, 593, 831, 844, 926, 992
HindIII	AAGCTT	2 cut(s)	55, 685
HinfI	GANTC	2 cut(s)	526, 992
HphI	GGTGA	3 cut(s)	671, 887, 975
Hpy188I	TCNGA	4 cut(s)	190, 214, 264, 490
Hpy188III	TCNNGA	4 cut(s)	121, 337, 441, 950
HpyAV	CCTTC	5 cut(s)	107, 322, 545, 866, 982
HpyCH4III	ACNGT	2 cut(s)	307, 968
HpyCH4V	TGCA	6 cut(s)	71, 242, 402, 589, 797, 810
HpyF10VI	GCNNNNNNNGC	2 cut(s)	693, 829
HpyF3I	CTNAG	4 cut(s)	211, 576, 652, 752
Hsp92I	GRCGYC	1 cut(s)	832
Hsp92II	CATG	8 cut(s)	162, 365, 470, 593, 831, 844, 926, 992
Ksp22I	TGATCA	1 cut(s)	730
Kzo9I	GATC	5 cut(s)	294, 730, 742, 800, 946
LguI	GCTCTTC	1 cut(s)	912
LmnI	GCTCC	1 cut(s)	547
LweI	GCATC	3 cut(s)	181, 827, 891
MaeI	CTAG	2 cut(s)	500, 737
MaeIII	GTNAC	3 cut(s)	307, 384, 769
MalI	GATC	5 cut(s)	296, 732, 744, 802, 948
MboI	GATC	5 cut(s)	294, 730, 742, 800, 946
MboII	GAAGA	9 cut(s)	113, 191, 301, 418, 910, 923, 926, 929, 956
MfeI	CAATTG	2 cut(s)	537, 546
MflI	RGATCY	3 cut(s)	742, 800, 946
MhlI	GDGCHC	1 cut(s)	567
MlsI	TGGCCA	1 cut(s)	360
MluCI	AATT	5 cut(s)	217, 279, 537, 546, 866
MluNI	TGGCCA	1 cut(s)	360
MlyI	GAGTC	1 cut(s)	520
MmeI	TCCRAC	1 cut(s)	834
Mox20I	TGGCCA	1 cut(s)	360
Mph1103I	ATGCAT	1 cut(s)	591
MroXI	GAANNNNTTC	2 cut(s)	167, 332
MscI	TGGCCA	1 cut(s)	360
MseI	TTAA	2 cut(s)	713, 1015
MslI	CAYNNNNRTG	3 cut(s)	163, 375, 520
Msp20I	TGGCCA	1 cut(s)	360
MspA1I	CMGCKG	1 cut(s)	778
MspR9I	CCNGG	1 cut(s)	719
MunI	CAATTG	2 cut(s)	537, 546
Mva1269I	GAATGC	1 cut(s)	810
MvaI	CCWGG	1 cut(s)	719
MwoI	GCNNNNNNNGC	2 cut(s)	693, 829
NdeII	GATC	5 cut(s)	294, 730, 742, 800, 946
NlaIII	CATG	8 cut(s)	162, 365, 470, 593, 831, 844, 926, 992
NlaIV	GGNNCC	2 cut(s)	556, 573
NmuCI	GTSAC	2 cut(s)	307, 384
NsiI	ATGCAT	1 cut(s)	591
PciSI	GCTCTTC	1 cut(s)	912
PctI	GAATGC	1 cut(s)	810
PdmI	GAANNNNTTC	2 cut(s)	167, 332
PfeI	GAWTC	1 cut(s)	992
PflMI	CCANNNNNTGG	1 cut(s)	671
PleI	GAGTC	1 cut(s)	520
PpsI	GAGTC	1 cut(s)	520
PpuMI	RGGWCCY	1 cut(s)	555
Psp5II	RGGWCCY	1 cut(s)	555
Psp6I	CCWGG	1 cut(s)	717
PspFI	CCCAGC	1 cut(s)	696
PspGI	CCWGG	1 cut(s)	717
PspN4I	GGNNCC	2 cut(s)	556, 573
PspPI	GGNCC	1 cut(s)	555
PspPPI	RGGWCCY	1 cut(s)	555
PsuI	RGATCY	3 cut(s)	742, 800, 946
PvuII	CAGCTG	1 cut(s)	778
RsaI	GTAC	1 cut(s)	581
RsaNI	GTAC	1 cut(s)	580
RseI	CAYNNNNRTG	3 cut(s)	163, 375, 520
SapI	GCTCTTC	1 cut(s)	912
SaqAI	TTAA	2 cut(s)	713, 1015
Sau3AI	GATC	5 cut(s)	294, 730, 742, 800, 946
Sau96I	GGNCC	1 cut(s)	555
ScaI	AGTACT	1 cut(s)	581
SchI	GAGTC	1 cut(s)	520
ScrFI	CCNGG	1 cut(s)	719
SduI	GDGCHC	1 cut(s)	567
SfaNI	GCATC	3 cut(s)	181, 827, 891
SinI	GGWCC	1 cut(s)	555
SmiMI	CAYNNNNRTG	3 cut(s)	163, 375, 520
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	5 cut(s)	217, 279, 537, 546, 866
SsiI	CCGC	1 cut(s)	986
SspI	AATATT	1 cut(s)	711
SspMI	CTAG	2 cut(s)	500, 737
StyD4I	CCNGG	1 cut(s)	717
StyI	CCWWGG	1 cut(s)	746
TaaI	ACNGT	2 cut(s)	307, 968
TaqI	TCGA	1 cut(s)	814
TasI	AATT	5 cut(s)	217, 279, 537, 546, 866
TatI	WGTACW	1 cut(s)	579
TfiI	GAWTC	1 cut(s)	992
Tru1I	TTAA	2 cut(s)	713, 1015
Tru9I	TTAA	2 cut(s)	713, 1015
TscAI	CASTG	1 cut(s)	672
TseFI	GTSAC	2 cut(s)	307, 384
Tsp45I	GTSAC	2 cut(s)	307, 384
TspDTI	ATGAA	3 cut(s)	17, 126, 330
TspRI	CASTG	1 cut(s)	672
Van91I	CCANNNNNTGG	1 cut(s)	671
VpaK11BI	GGWCC	1 cut(s)	555
XapI	RAATTY	1 cut(s)	217
XcmI	CCANNNNNNNNNTGG	1 cut(s)	156
XmnI	GAANNNNTTC	2 cut(s)	167, 332
XspI	CTAG	2 cut(s)	500, 737
ZrmI	AGTACT	1 cut(s)	581
Zsp2I	ATGCAT	1 cut(s)	591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.