Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0009525

Physical Location & Seq

Genomic Coordinates Reverse (-)

17630792 .. 17634435

Gene Structure 3644 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG102100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGAAATACATTAGGACAAACAGCCTGAAAAGGCTATTCTCACTCAAACGCAGGAGCTTGGAAGAAGTTGCAATCCCGCCAAGTGTGTGCTGTATTGTTGAAGAGAGCAATGAAGGCCTCAAGAATGTTGAAGCAATAGAGCTTTCTCCAAGACCCACATGGAAATGCTTCTCCTTTGAAGAGATTTCAGATGCCACCAATGGTTTCAGCTCAGAGAATTTGGTTGGGAAAGGAGGCTATGCAGAGGTGTACAGAGGTGTTCTGAAAGGTAATGAGGAAATTGCTGTGAAGAGGATCACAAAAACTGTGACTGATGAAAGGAAAGAGAAGGAGTTCTTGAATGAGATTGGAACTATTGGCCATGTTTGCCATCCAAATGTGTTGTCACTCGTGGGTTGTTGCATTGACAATGGCCTATATCTCATCTTCCATTTCTCCTCCAGAGGCTCTGTTGCTTCTCTACTCCATGATGAGAGTTTGCCACCTATGGATTGGAAAACAAGGTATAAGATAGCTATTGGGACAGGTAGAGGGCTCCATTACTTGCACAAGGGCTGCCAGAGGAGAATAATTCACAGGGACATTAAGTCCACAAATATACTATTGACTGTAGATTTTGAACCACAGATATCTGATTTTGGACTAGCAAAATGGCTTCCATCACAATGGACTCATCACTCAATTGCTCCAATTGAAGGGACCTTTGGGCACTTGGCACCTGAGTACTATATGCATGGGATTGTGGATGAGAAAACGGATGTCTTTGCTTTTGGAGTTATTTTATTAGAACTCATCTCAGGCAAGAAACCAGTGGATGGGTCTCACCAAAGCTTACATAGCTGGGTAATGACAATCTTGTGGAGCACTAATAATTTCAAGTTGCTCATTTTTCAGAAGGGAATAATTGGCTTGTTGGGTTTCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

308

Amino Acids

34.73

Weight (kDa)

7.67

Isoelectric Point (pI)

37.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	70 - 278	6e-38	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	72 - 276	1.8e-37	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18890 AT2G18890 AT2G18890
fragaria_vesca	FvH4_4g07970 FvH4_4g07970 FvH4_4g07970 FvH4_4g07970 FvH4_4g07970 FvH4_4g07970 FvH4_4g07970
malus_domestica	MD13G1251500.v1.1
prunus_persica	Prupe.1G084300_v2.0.a1 Prupe.1G084300_v2.0.a1
pyrus_communis	pycom13g22600
rosa_chinensis	RchiOBHm_Chr4g0401711
rosa_laevigata	RLG00000009140
rosa_multiflora	Rmu_sc0001405.1_g000003
rosa_roxburghii	Rroxscaffold_5G00346180
rosa_rugosa	Rorug04G0031300
rosa_samantha	Rh4BG102100 Rh4CG116500
rosa_wichuraiana	Rw4G008810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	715
AccB7I	CCANNNNNTGG	1 cut(s)	815
AciI	CCGC	1 cut(s)	77
AclWI	GGATC	1 cut(s)	302
AcoI	YGGCCR	1 cut(s)	358
AcsI	RAATTY	1 cut(s)	217
AfaI	GTAC	2 cut(s)	251, 725
AfiI	CCNNNNNNNGG	2 cut(s)	695, 815
AgsI	TTSAA	7 cut(s)	101, 131, 179, 340, 620, 695, 877
AhdI	GACNNNNNGTC	1 cut(s)	586
AjuI	GAANNNNNNNTTGG	2 cut(s)	687, 719
AluBI	AGCT	6 cut(s)	57, 142, 210, 515, 831, 840
AluI	AGCT	6 cut(s)	57, 142, 210, 515, 831, 840
Alw21I	GWGCWC	1 cut(s)	866
Alw26I	GTCTC	1 cut(s)	825
AlwI	GGATC	1 cut(s)	302
AoxI	GGCC	3 cut(s)	115, 358, 412
ApeKI	GCWGC	1 cut(s)	555
ApoI	RAATTY	1 cut(s)	217
ArsI	GACNNNNNNTTYG	2 cut(s)	368, 400
Asp700I	GAANNNNTTC	2 cut(s)	167, 332
AspS9I	GGNCC	1 cut(s)	699
AsuHPI	GGTGA	1 cut(s)	815
AvaII	GGWCC	1 cut(s)	699
BaeGI	GKGCMC	1 cut(s)	711
BalI	TGGCCA	1 cut(s)	360
BanI	GGYRCC	1 cut(s)	715
BanII	GRGCYC	1 cut(s)	537
BauI	CACGAG	1 cut(s)	389
Bbv12I	GWGCWC	1 cut(s)	866
BbvI	GCAGC	1 cut(s)	542
BccI	CCATC	3 cut(s)	378, 667, 809
BcoDI	GTCTC	1 cut(s)	825
BfaI	CTAG	2 cut(s)	644, 925
BfmI	CTRYAG	1 cut(s)	609
BisI	GCNGC	1 cut(s)	556
BlsI	GCNGC	1 cut(s)	557
BmcAI	AGTACT	1 cut(s)	725
Bme18I	GGWCC	1 cut(s)	699
BmeRI	GACNNNNNGTC	1 cut(s)	586
BmgT120I	GGNCC	1 cut(s)	699
BmiI	GGNNCC	3 cut(s)	536, 700, 717
BmsI	GCATC	1 cut(s)	181
BpmI	CTGGAG	1 cut(s)	424
BpuEI	CTTGAG	1 cut(s)	104
BsaI	GGTCTC	1 cut(s)	825
Bsc4I	CCNNNNNNNGG	2 cut(s)	695, 815
Bse1I	ACTGG	1 cut(s)	809
Bse3DI	GCAATG	1 cut(s)	115
BseGI	GGATG	4 cut(s)	370, 751, 763, 820
BseLI	CCNNNNNNNGG	2 cut(s)	695, 815
BseMI	GCAATG	1 cut(s)	115
BseMII	CTCAG	3 cut(s)	225, 711, 810
BseNI	ACTGG	1 cut(s)	809
BseRI	GAGGAG	2 cut(s)	427, 577
BseSI	GKGCMC	1 cut(s)	711
BseXI	GCAGC	1 cut(s)	542
BseYI	CCCAGC	1 cut(s)	840
BshFI	GGCC	3 cut(s)	117, 360, 414
BshNI	GGYRCC	1 cut(s)	715
BsiHKAI	GWGCWC	1 cut(s)	866
BslFI	GGGAC	3 cut(s)	535, 593, 712
BslI	CCNNNNNNNGG	2 cut(s)	695, 815
BsmAI	GTCTC	1 cut(s)	825
BsmFI	GGGAC	3 cut(s)	535, 593, 712
BsnI	GGCC	3 cut(s)	117, 360, 414
Bso31I	GGTCTC	1 cut(s)	825
Bsp1286I	GDGCHC	3 cut(s)	537, 711, 866
Bsp1407I	TGTACA	1 cut(s)	249
Bsp143I	GATC	1 cut(s)	294
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	3 cut(s)	117, 360, 414
BspCNI	CTCAG	3 cut(s)	224, 712, 809
BspLI	GGNNCC	3 cut(s)	536, 700, 717
BspPI	GGATC	1 cut(s)	302
BspT107I	GGYRCC	1 cut(s)	715
BspTNI	GGTCTC	1 cut(s)	825
BsrDI	GCAATG	1 cut(s)	115
BsrGI	TGTACA	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	809
BssMI	GATC	1 cut(s)	294
BssSI	CACGAG	1 cut(s)	389
Bst2BI	CACGAG	1 cut(s)	389
Bst4CI	ACNGT	2 cut(s)	307, 610
Bst6I	CTCTTC	3 cut(s)	96, 174, 284
BstAUI	TGTACA	1 cut(s)	249
BstDEI	CTNAG	3 cut(s)	211, 720, 796
BstF5I	GGATG	4 cut(s)	370, 751, 763, 820
BstKTI	GATC	1 cut(s)	297
BstMAI	GTCTC	1 cut(s)	825
BstMBI	GATC	1 cut(s)	294
BstMWI	GCNNNNNNNGC	3 cut(s)	114, 366, 837
BstSFI	CTRYAG	1 cut(s)	609
BstSLI	GKGCMC	1 cut(s)	711
BstV1I	GCAGC	1 cut(s)	542
BstXI	CCANNNNNNTGG	1 cut(s)	666
BsuRI	GGCC	3 cut(s)	117, 360, 414
BtsCI	GGATG	4 cut(s)	370, 751, 763, 820
BtsIMutI	CAGTG	1 cut(s)	816
Cfr13I	GGNCC	1 cut(s)	699
Csp6I	GTAC	2 cut(s)	250, 724
CviAII	CATG	4 cut(s)	159, 362, 467, 734
CviQI	GTAC	2 cut(s)	250, 724
DdeI	CTNAG	3 cut(s)	211, 720, 796
DpnI	GATC	1 cut(s)	296
DpnII	GATC	1 cut(s)	294
DriI	GACNNNNNGTC	1 cut(s)	586
EaeI	YGGCCR	1 cut(s)	358
Eam1104I	CTCTTC	3 cut(s)	96, 174, 284
Eam1105I	GACNNNNNGTC	1 cut(s)	586
EarI	CTCTTC	3 cut(s)	96, 174, 284
Eco147I	AGGCCT	1 cut(s)	117
Eco24I	GRGCYC	1 cut(s)	537
Eco31I	GGTCTC	1 cut(s)	825
Eco32I	GATATC	1 cut(s)	630
Eco47I	GGWCC	1 cut(s)	699
EcoO109I	RGGNCCY	1 cut(s)	699
EcoRV	GATATC	1 cut(s)	630
EcoT22I	ATGCAT	1 cut(s)	735
EcoT38I	GRGCYC	1 cut(s)	537
FaeI	CATG	4 cut(s)	162, 365, 470, 737
FalI	AAGNNNNNCTT	2 cut(s)	320, 352
FaqI	GGGAC	3 cut(s)	535, 593, 712
FatI	CATG	4 cut(s)	158, 361, 466, 733
FauI	CCCGC	1 cut(s)	84
Fnu4HI	GCNGC	1 cut(s)	556
FokI	GGATG	4 cut(s)	357, 758, 770, 827
FriOI	GRGCYC	1 cut(s)	537
Fsp4HI	GCNGC	1 cut(s)	556
FspBI	CTAG	2 cut(s)	644, 925
GluI	GCNGC	1 cut(s)	556
GsaI	CCCAGC	1 cut(s)	844
GsuI	CTGGAG	1 cut(s)	424
HaeIII	GGCC	3 cut(s)	117, 360, 414
Hin1II	CATG	4 cut(s)	162, 365, 470, 737
HindIII	AAGCTT	1 cut(s)	829
HinfI	GANTC	1 cut(s)	670
HphI	GGTGA	1 cut(s)	815
Hpy166II	GTNNAC	2 cut(s)	250, 591
Hpy188I	TCNGA	5 cut(s)	190, 214, 264, 634, 894
Hpy188III	TCNNGA	3 cut(s)	121, 337, 441
Hpy8I	GTNNAC	2 cut(s)	250, 591
HpyAV	CCTTC	4 cut(s)	107, 322, 689, 889
HpyCH4III	ACNGT	2 cut(s)	307, 610
HpyCH4V	TGCA	5 cut(s)	71, 242, 402, 547, 733
HpyF10VI	GCNNNNNNNGC	3 cut(s)	114, 366, 837
HpyF3I	CTNAG	3 cut(s)	211, 720, 796
Hsp92II	CATG	4 cut(s)	162, 365, 470, 737
Kzo9I	GATC	1 cut(s)	294
LmnI	GCTCC	4 cut(s)	54, 540, 691, 861
Lsp1109I	GCAGC	1 cut(s)	542
LweI	GCATC	1 cut(s)	181
MaeI	CTAG	2 cut(s)	644, 925
MaeIII	GTNAC	2 cut(s)	307, 384
MalI	GATC	1 cut(s)	296
MboI	GATC	1 cut(s)	294
MboII	GAAGA	6 cut(s)	74, 113, 191, 301, 418, 913
MfeI	CAATTG	2 cut(s)	681, 690
MhlI	GDGCHC	3 cut(s)	537, 711, 866
MlsI	TGGCCA	1 cut(s)	360
MluCI	AATT	7 cut(s)	217, 279, 570, 681, 690, 871, 903
MluNI	TGGCCA	1 cut(s)	360
MlyI	GAGTC	1 cut(s)	664
Mox20I	TGGCCA	1 cut(s)	360
Mph1103I	ATGCAT	1 cut(s)	735
MroXI	GAANNNNTTC	2 cut(s)	167, 332
MscI	TGGCCA	1 cut(s)	360
MseI	TTAA	1 cut(s)	585
MslI	CAYNNNNRTG	3 cut(s)	163, 375, 664
Msp20I	TGGCCA	1 cut(s)	360
MunI	CAATTG	2 cut(s)	681, 690
MwoI	GCNNNNNNNGC	3 cut(s)	114, 366, 837
NdeII	GATC	1 cut(s)	294
NlaIII	CATG	4 cut(s)	162, 365, 470, 737
NlaIV	GGNNCC	3 cut(s)	536, 700, 717
NmuCI	GTSAC	2 cut(s)	307, 384
NsiI	ATGCAT	1 cut(s)	735
PceI	AGGCCT	1 cut(s)	117
PdmI	GAANNNNTTC	2 cut(s)	167, 332
PflMI	CCANNNNNTGG	1 cut(s)	815
PkrI	GCNGC	1 cut(s)	557
PleI	GAGTC	1 cut(s)	664
PpsI	GAGTC	1 cut(s)	664
PpuMI	RGGWCCY	1 cut(s)	699
Psp5II	RGGWCCY	1 cut(s)	699
PspFI	CCCAGC	1 cut(s)	840
PspN4I	GGNNCC	3 cut(s)	536, 700, 717
PspPI	GGNCC	1 cut(s)	699
PspPPI	RGGWCCY	1 cut(s)	699
RsaI	GTAC	2 cut(s)	251, 725
RsaNI	GTAC	2 cut(s)	250, 724
RseI	CAYNNNNRTG	3 cut(s)	163, 375, 664
SaqAI	TTAA	1 cut(s)	585
SatI	GCNGC	1 cut(s)	556
Sau3AI	GATC	1 cut(s)	294
Sau96I	GGNCC	1 cut(s)	699
ScaI	AGTACT	1 cut(s)	725
SchI	GAGTC	1 cut(s)	664
SduI	GDGCHC	3 cut(s)	537, 711, 866
SfaNI	GCATC	1 cut(s)	181
SfcI	CTRYAG	1 cut(s)	609
SinI	GGWCC	1 cut(s)	699
SmiMI	CAYNNNNRTG	3 cut(s)	163, 375, 664
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	7 cut(s)	217, 279, 570, 681, 690, 871, 903
SseBI	AGGCCT	1 cut(s)	117
SsiI	CCGC	1 cut(s)	77
SspMI	CTAG	2 cut(s)	644, 925
StuI	AGGCCT	1 cut(s)	117
TaaI	ACNGT	2 cut(s)	307, 610
TasI	AATT	7 cut(s)	217, 279, 570, 681, 690, 871, 903
TatI	WGTACW	2 cut(s)	249, 723
Tru1I	TTAA	1 cut(s)	585
Tru9I	TTAA	1 cut(s)	585
TscAI	CASTG	1 cut(s)	816
TseFI	GTSAC	2 cut(s)	307, 384
TseI	GCWGC	1 cut(s)	555
Tsp45I	GTSAC	2 cut(s)	307, 384
TspDTI	ATGAA	3 cut(s)	17, 126, 330
TspGWI	ACGGA	1 cut(s)	770
TspRI	CASTG	1 cut(s)	816
Van91I	CCANNNNNTGG	1 cut(s)	815
VpaK11BI	GGWCC	1 cut(s)	699
XapI	RAATTY	1 cut(s)	217
XcmI	CCANNNNNNNNNTGG	2 cut(s)	156, 489
XmnI	GAANNNNTTC	2 cut(s)	167, 332
XspI	CTAG	2 cut(s)	644, 925
ZrmI	AGTACT	1 cut(s)	725
Zsp2I	ATGCAT	1 cut(s)	735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.