Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0009525

Physical Location & Seq

Genomic Coordinates Reverse (-)

22338909 .. 22342699

Gene Structure 3791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG116500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGAAATACATTAGGACAAACAGCCTGAAAAGGCTATTCTCACTCAAACGCAGAAGCTTGGAAGAAGTTGCAAGCCCACCAAGTGTGTGCTGTAATGTTGAAGAGAGCAATGAAGGTCTCAAGAATGTTGAAGCAATAGAGCTTTCTCCAAGACCCACATGGAAGTGCTTCTCCTTTGAAGAGATTTCAGATGCCACCAATGGTTTCAGCTCAGAGAATTTGGTTGGGAAAGGAGGATATGCAGAGGTGTATAGAGGTGTTCTGAAAGGTAATGAGGAAATTGCTGTGAAGAGGATCACAAAAACTGTGACTGATGAAAGGAAAGAGAAGGAGTTCCTGAATGAGATTGGAACTATTGGCCATGTTTGCCATCCAAATGTTTTGTCACTTGTGGGTTGTTGCATTGACAATGGCCTTTATCTCATCTTCCATTTCTCCTCCAGAGGCTCTGTTGCTTCTCTACTCCATGATGAGAGTTTGCCGCCTATGGATTGGAAGACAAGGTATAAAATAGCTATTGGGACAGGTAGGGGCCTCCGTTACTTGCACAAGGGCTGCCAGAGGAGGATAATTCACAGGGACATTAAGTCCACAAATATACTATTGACTGTAGATTTTGAACCACAGATATCTGATTTTGGACTAGCAAAATGGCTTCCATCACAATGGACTCATCACTCAATTGCTCCAATTGAAGGGACCTTTGGGCACTTGGCACCTGAGTACTATATGCATGGGATTGTAGATGAGAAAACAGATGTCTTTGCTTTTGGAGTTATTTTATTAGAACTCATCTCAGGCAAGAAACCAGTGGATGGGTCTCACCAAAGCTTACATAGCTGGGCAAAACCAATATTAAACCAGGGAGAGATTGATCAGCTAGTAGATCCAAGGCTTCGAGGGGTCTATGATGTTACAGAGCTGAAAAGACTTGCCTTTGCAGGATCTCTCTGCATTCGAGCATCGCCCACATGGCGTCCTACCATGAGCGAGGTACCAATTAATTATTTTGTCATGCTACTATTGCATTATGAATCACATCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

348

Amino Acids

39.3

Weight (kDa)

7.22

Isoelectric Point (pI)

42.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	70 - 279	5.2e-38	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	72 - 276	1.6e-37	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18890 AT2G18890 AT2G18890
fragaria_vesca	FvH4_4g07970 FvH4_4g07970 FvH4_4g07970 FvH4_4g07970 FvH4_4g07970 FvH4_4g07970 FvH4_4g07970
malus_domestica	MD13G1251500.v1.1
prunus_persica	Prupe.1G084300_v2.0.a1 Prupe.1G084300_v2.0.a1
pyrus_communis	pycom13g22600
rosa_chinensis	RchiOBHm_Chr4g0401711
rosa_laevigata	RLG00000009140
rosa_multiflora	Rmu_sc0001405.1_g000003
rosa_roxburghii	Rroxscaffold_5G00346180
rosa_rugosa	Rorug04G0031300
rosa_samantha	Rh4BG102100 Rh4CG116500
rosa_wichuraiana	Rw4G008810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	994
AccB1I	GGYRCC	2 cut(s)	715, 994
AccB7I	CCANNNNNTGG	1 cut(s)	815
AciI	CCGC	1 cut(s)	482
AclWI	GGATC	3 cut(s)	302, 881, 952
AcoI	YGGCCR	1 cut(s)	358
AcsI	RAATTY	1 cut(s)	217
AcyI	GRCGYC	1 cut(s)	976
AdeI	CACNNNGTG	1 cut(s)	83
AfaI	GTAC	2 cut(s)	725, 996
AfiI	CCNNNNNNNGG	2 cut(s)	695, 815
AgsI	TTSAA	5 cut(s)	101, 131, 179, 620, 695
AhdI	GACNNNNNGTC	1 cut(s)	586
AjnI	CCWGG	1 cut(s)	861
AjuI	GAANNNNNNNTTGG	2 cut(s)	687, 719
AluBI	AGCT	8 cut(s)	57, 142, 210, 515, 831, 840, 880, 922
AluI	AGCT	8 cut(s)	57, 142, 210, 515, 831, 840, 880, 922
Alw26I	GTCTC	2 cut(s)	122, 825
AlwI	GGATC	3 cut(s)	302, 881, 952
AoxI	GGCC	3 cut(s)	358, 412, 532
ApeKI	GCWGC	1 cut(s)	555
ApoI	RAATTY	1 cut(s)	217
ArsI	GACNNNNNNTTYG	2 cut(s)	368, 400
AseI	ATTAAT	1 cut(s)	1002
Asp700I	GAANNNNTTC	2 cut(s)	167, 332
Asp718I	GGTACC	1 cut(s)	994
AspS9I	GGNCC	2 cut(s)	532, 699
AsuHPI	GGTGA	1 cut(s)	815
AvaII	GGWCC	1 cut(s)	699
BaeGI	GKGCMC	1 cut(s)	711
BalI	TGGCCA	1 cut(s)	360
BanI	GGYRCC	2 cut(s)	715, 994
BbsI	GAAGAC	1 cut(s)	503
BbvI	GCAGC	1 cut(s)	542
BccI	CCATC	3 cut(s)	378, 667, 809
BciT130I	CCWGG	1 cut(s)	863
BclI	TGATCA	1 cut(s)	874
BcoDI	GTCTC	2 cut(s)	122, 825
BfaI	CTAG	2 cut(s)	644, 881
BfmI	CTRYAG	1 cut(s)	609
BglI	GCCNNNNNGGC	1 cut(s)	973
BisI	GCNGC	2 cut(s)	482, 556
BlsI	GCNGC	2 cut(s)	483, 557
BmcAI	AGTACT	1 cut(s)	725
Bme1390I	CCNGG	1 cut(s)	863
Bme18I	GGWCC	1 cut(s)	699
BmeRI	GACNNNNNGTC	1 cut(s)	586
BmgT120I	GGNCC	2 cut(s)	532, 699
BmiI	GGNNCC	4 cut(s)	533, 700, 717, 996
BmrFI	CCNGG	1 cut(s)	863
BmsI	GCATC	2 cut(s)	181, 971
BpiI	GAAGAC	1 cut(s)	503
BpmI	CTGGAG	1 cut(s)	424
BpuEI	CTTGAG	1 cut(s)	104
BsaHI	GRCGYC	1 cut(s)	976
BsaI	GGTCTC	2 cut(s)	122, 825
BsaJI	CCNNGG	2 cut(s)	862, 890
Bsc4I	CCNNNNNNNGG	2 cut(s)	695, 815
Bse1I	ACTGG	1 cut(s)	809
Bse3DI	GCAATG	1 cut(s)	115
BseBI	CCWGG	1 cut(s)	863
BseDI	CCNNGG	2 cut(s)	862, 890
BseGI	GGATG	2 cut(s)	370, 820
BseLI	CCNNNNNNNGG	2 cut(s)	695, 815
BseMI	GCAATG	1 cut(s)	115
BseMII	CTCAG	3 cut(s)	225, 711, 810
BseNI	ACTGG	1 cut(s)	809
BseRI	GAGGAG	2 cut(s)	427, 577
BseSI	GKGCMC	1 cut(s)	711
BseXI	GCAGC	1 cut(s)	542
BseYI	CCCAGC	1 cut(s)	840
BshFI	GGCC	3 cut(s)	360, 414, 534
BshNI	GGYRCC	2 cut(s)	715, 994
BslFI	GGGAC	3 cut(s)	535, 593, 712
BslI	CCNNNNNNNGG	2 cut(s)	695, 815
BsmAI	GTCTC	2 cut(s)	122, 825
BsmFI	GGGAC	3 cut(s)	535, 593, 712
BsmI	GAATGC	1 cut(s)	954
BsnI	GGCC	3 cut(s)	360, 414, 534
Bso31I	GGTCTC	2 cut(s)	122, 825
Bsp1286I	GDGCHC	1 cut(s)	711
Bsp143I	GATC	4 cut(s)	294, 874, 886, 944
BspACI	CCGC	1 cut(s)	482
BspANI	GGCC	3 cut(s)	360, 414, 534
BspCNI	CTCAG	3 cut(s)	224, 712, 809
BspLI	GGNNCC	4 cut(s)	533, 700, 717, 996
BspPI	GGATC	3 cut(s)	302, 881, 952
BspT107I	GGYRCC	2 cut(s)	715, 994
BspTNI	GGTCTC	2 cut(s)	122, 825
BsrDI	GCAATG	1 cut(s)	115
BsrI	ACTGG	1 cut(s)	809
BssECI	CCNNGG	2 cut(s)	862, 890
BssMI	GATC	4 cut(s)	294, 874, 886, 944
BssNI	GRCGYC	1 cut(s)	976
BssT1I	CCWWGG	1 cut(s)	890
Bst2UI	CCWGG	1 cut(s)	863
Bst4CI	ACNGT	2 cut(s)	307, 610
Bst6I	CTCTTC	3 cut(s)	96, 174, 284
BstACI	GRCGYC	1 cut(s)	976
BstC8I	GCNNGC	1 cut(s)	73
BstDEI	CTNAG	3 cut(s)	211, 720, 796
BstF5I	GGATG	2 cut(s)	370, 820
BstKTI	GATC	4 cut(s)	297, 877, 889, 947
BstMAI	GTCTC	2 cut(s)	122, 825
BstMBI	GATC	4 cut(s)	294, 874, 886, 944
BstMWI	GCNNNNNNNGC	4 cut(s)	366, 837, 973, 1024
BstNI	CCWGG	1 cut(s)	863
BstSCI	CCNGG	1 cut(s)	861
BstSFI	CTRYAG	1 cut(s)	609
BstSLI	GKGCMC	1 cut(s)	711
BstV1I	GCAGC	1 cut(s)	542
BstV2I	GAAGAC	1 cut(s)	503
BstX2I	RGATCY	2 cut(s)	886, 944
BstXI	CCANNNNNNTGG	1 cut(s)	666
BstYI	RGATCY	2 cut(s)	886, 944
BsuRI	GGCC	3 cut(s)	360, 414, 534
BtgZI	GCGATG	1 cut(s)	948
BtsCI	GGATG	2 cut(s)	370, 820
BtsIMutI	CAGTG	1 cut(s)	816
Cac8I	GCNNGC	1 cut(s)	73
Cfr13I	GGNCC	2 cut(s)	532, 699
CseI	GACGC	1 cut(s)	965
Csp6I	GTAC	2 cut(s)	724, 995
CviAII	CATG	7 cut(s)	159, 362, 467, 734, 972, 985, 1015
CviQI	GTAC	2 cut(s)	724, 995
DdeI	CTNAG	3 cut(s)	211, 720, 796
DpnI	GATC	4 cut(s)	296, 876, 888, 946
DpnII	GATC	4 cut(s)	294, 874, 886, 944
DraIII	CACNNNGTG	1 cut(s)	83
DriI	GACNNNNNGTC	1 cut(s)	586
EaeI	YGGCCR	1 cut(s)	358
Eam1104I	CTCTTC	3 cut(s)	96, 174, 284
Eam1105I	GACNNNNNGTC	1 cut(s)	586
EarI	CTCTTC	3 cut(s)	96, 174, 284
Eco130I	CCWWGG	1 cut(s)	890
Eco31I	GGTCTC	2 cut(s)	122, 825
Eco32I	GATATC	1 cut(s)	630
Eco47I	GGWCC	1 cut(s)	699
EcoO109I	RGGNCCY	2 cut(s)	532, 699
EcoRII	CCWGG	1 cut(s)	861
EcoRV	GATATC	1 cut(s)	630
EcoT14I	CCWWGG	1 cut(s)	890
EcoT22I	ATGCAT	1 cut(s)	735
ErhI	CCWWGG	1 cut(s)	890
FaeI	CATG	7 cut(s)	162, 365, 470, 737, 975, 988, 1018
FaqI	GGGAC	3 cut(s)	535, 593, 712
FatI	CATG	7 cut(s)	158, 361, 466, 733, 971, 984, 1014
FbaI	TGATCA	1 cut(s)	874
Fnu4HI	GCNGC	2 cut(s)	482, 556
FokI	GGATG	2 cut(s)	357, 827
Fsp4HI	GCNGC	2 cut(s)	482, 556
FspBI	CTAG	2 cut(s)	644, 881
GluI	GCNGC	2 cut(s)	482, 556
GsaI	CCCAGC	1 cut(s)	844
GsuI	CTGGAG	1 cut(s)	424
HaeIII	GGCC	3 cut(s)	360, 414, 534
HgaI	GACGC	1 cut(s)	965
Hin1I	GRCGYC	1 cut(s)	976
Hin1II	CATG	7 cut(s)	162, 365, 470, 737, 975, 988, 1018
HindIII	AAGCTT	2 cut(s)	55, 829
HinfI	GANTC	2 cut(s)	670, 1034
HphI	GGTGA	1 cut(s)	815
Hpy166II	GTNNAC	1 cut(s)	591
Hpy188I	TCNGA	4 cut(s)	190, 214, 264, 634
Hpy188III	TCNNGA	3 cut(s)	121, 337, 441
Hpy8I	GTNNAC	1 cut(s)	591
HpyAV	CCTTC	3 cut(s)	107, 322, 689
HpyCH4III	ACNGT	2 cut(s)	307, 610
HpyCH4V	TGCA	8 cut(s)	71, 242, 402, 547, 733, 941, 954, 1027
HpyF10VI	GCNNNNNNNGC	4 cut(s)	366, 837, 973, 1024
HpyF3I	CTNAG	3 cut(s)	211, 720, 796
Hsp92I	GRCGYC	1 cut(s)	976
Hsp92II	CATG	7 cut(s)	162, 365, 470, 737, 975, 988, 1018
KpnI	GGTACC	1 cut(s)	998
Ksp22I	TGATCA	1 cut(s)	874
Kzo9I	GATC	4 cut(s)	294, 874, 886, 944
LmnI	GCTCC	1 cut(s)	691
Lsp1109I	GCAGC	1 cut(s)	542
LweI	GCATC	2 cut(s)	181, 971
MaeI	CTAG	2 cut(s)	644, 881
MaeIII	GTNAC	4 cut(s)	307, 384, 539, 913
MalI	GATC	4 cut(s)	296, 876, 888, 946
MboI	GATC	4 cut(s)	294, 874, 886, 944
MboII	GAAGA	6 cut(s)	74, 113, 191, 301, 418, 508
MfeI	CAATTG	2 cut(s)	681, 690
MflI	RGATCY	2 cut(s)	886, 944
MhlI	GDGCHC	1 cut(s)	711
MlsI	TGGCCA	1 cut(s)	360
MluCI	AATT	7 cut(s)	217, 279, 570, 681, 690, 999, 1003
MluNI	TGGCCA	1 cut(s)	360
MlyI	GAGTC	1 cut(s)	664
Mox20I	TGGCCA	1 cut(s)	360
Mph1103I	ATGCAT	1 cut(s)	735
MroXI	GAANNNNTTC	2 cut(s)	167, 332
MscI	TGGCCA	1 cut(s)	360
MseI	TTAA	3 cut(s)	585, 857, 1002
MslI	CAYNNNNRTG	3 cut(s)	163, 375, 664
Msp20I	TGGCCA	1 cut(s)	360
MspR9I	CCNGG	1 cut(s)	863
MunI	CAATTG	2 cut(s)	681, 690
Mva1269I	GAATGC	1 cut(s)	954
MvaI	CCWGG	1 cut(s)	863
MwoI	GCNNNNNNNGC	4 cut(s)	366, 837, 973, 1024
NdeII	GATC	4 cut(s)	294, 874, 886, 944
NlaIII	CATG	7 cut(s)	162, 365, 470, 737, 975, 988, 1018
NlaIV	GGNNCC	4 cut(s)	533, 700, 717, 996
NmuCI	GTSAC	2 cut(s)	307, 384
NsiI	ATGCAT	1 cut(s)	735
PctI	GAATGC	1 cut(s)	954
PdmI	GAANNNNTTC	2 cut(s)	167, 332
PfeI	GAWTC	1 cut(s)	1034
PflMI	CCANNNNNTGG	1 cut(s)	815
PkrI	GCNGC	2 cut(s)	483, 557
PleI	GAGTC	1 cut(s)	664
PpsI	GAGTC	1 cut(s)	664
PpuMI	RGGWCCY	1 cut(s)	699
PshBI	ATTAAT	1 cut(s)	1002
Psp5II	RGGWCCY	1 cut(s)	699
Psp6I	CCWGG	1 cut(s)	861
PspFI	CCCAGC	1 cut(s)	840
PspGI	CCWGG	1 cut(s)	861
PspN4I	GGNNCC	4 cut(s)	533, 700, 717, 996
PspPI	GGNCC	2 cut(s)	532, 699
PspPPI	RGGWCCY	1 cut(s)	699
PsuI	RGATCY	2 cut(s)	886, 944
RsaI	GTAC	2 cut(s)	725, 996
RsaNI	GTAC	2 cut(s)	724, 995
RseI	CAYNNNNRTG	3 cut(s)	163, 375, 664
SaqAI	TTAA	3 cut(s)	585, 857, 1002
SatI	GCNGC	2 cut(s)	482, 556
Sau3AI	GATC	4 cut(s)	294, 874, 886, 944
Sau96I	GGNCC	2 cut(s)	532, 699
ScaI	AGTACT	1 cut(s)	725
SchI	GAGTC	1 cut(s)	664
ScrFI	CCNGG	1 cut(s)	863
SduI	GDGCHC	1 cut(s)	711
SfaNI	GCATC	2 cut(s)	181, 971
SfcI	CTRYAG	1 cut(s)	609
SinI	GGWCC	1 cut(s)	699
SmiMI	CAYNNNNRTG	3 cut(s)	163, 375, 664
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	7 cut(s)	217, 279, 570, 681, 690, 999, 1003
SsiI	CCGC	1 cut(s)	482
SspI	AATATT	1 cut(s)	855
SspMI	CTAG	2 cut(s)	644, 881
StyD4I	CCNGG	1 cut(s)	861
StyI	CCWWGG	1 cut(s)	890
TaaI	ACNGT	2 cut(s)	307, 610
TaqI	TCGA	2 cut(s)	898, 958
TasI	AATT	7 cut(s)	217, 279, 570, 681, 690, 999, 1003
TatI	WGTACW	1 cut(s)	723
TauI	GCSGC	1 cut(s)	484
TfiI	GAWTC	1 cut(s)	1034
Tru1I	TTAA	3 cut(s)	585, 857, 1002
Tru9I	TTAA	3 cut(s)	585, 857, 1002
TscAI	CASTG	1 cut(s)	816
TseFI	GTSAC	2 cut(s)	307, 384
TseI	GCWGC	1 cut(s)	555
Tsp45I	GTSAC	2 cut(s)	307, 384
TspDTI	ATGAA	4 cut(s)	17, 126, 330, 1047
TspGWI	ACGGA	1 cut(s)	527
TspRI	CASTG	1 cut(s)	816
Van91I	CCANNNNNTGG	1 cut(s)	815
VpaK11BI	GGWCC	1 cut(s)	699
VspI	ATTAAT	1 cut(s)	1002
XapI	RAATTY	1 cut(s)	217
XcmI	CCANNNNNNNNNTGG	1 cut(s)	156
XmnI	GAANNNNTTC	2 cut(s)	167, 332
XspI	CTAG	2 cut(s)	644, 881
ZrmI	AGTACT	1 cut(s)	725
Zsp2I	ATGCAT	1 cut(s)	735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.