AT2G20390

Cytochrome oxidase complex assembly protein 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0013482
Physical Location & Seq
Reverse (-)
8796185 .. 8798293
2109 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G20390.2

Sequence Viewer

Length: 552 bp
ATGTTCGCGAGGCGGTTCACTTCGTTCTTCAAAGGATCTTCAACCTCAAGCCCGGACAAAACAGCTGGGACATTGGGCTCTTTTGGTCGCAAGGCAGTGTCTTTCGTCTTGATTACAGTCACTGGTGGTGTTGCTTTGAGTGCTCTCGATGATCTTTCTATCTATCGTGGATGTAGCAGCAAGGCGATGGAGAAGGTGATGAATAGTAAGGTGATGATTGAAGCCATCGGAGAGCCAATTGAGAAAGGGCCATGGTACAATGCTTCACTAGCTGTTTCTCACCAAAGGCACTCAGTGTCTTGTTCATTCCCTGTGATTGGACCACAAGGCACAGGAATCTTGCATCTCAAAGCTGTTCGCAATGGAGAAGATAGCATGTTCGGGTTTCTCCAGCAAAGGGACTGGGACATTCTGATAATGGACGCACTTGTCCATGTCCCGTCAAACGAGGGACCCCAACAAACCTTGAGAATCAACGTTACTGACATCGTTGATCCTTCGCCTGGTACCCACGATAAACCTTTGGAACCATTAGAGCCAGAGAAGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Coa1

Protein Analysis

183

Amino Acids

19.82

Weight (kDa)

6.51

Isoelectric Point (pI)

37.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013482)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20390 AT2G20390
fragaria_vesca FvH4_2g20510
malus_domestica MD05G1188900.v1.1 MD10G1176500.v1.1
prunus_persica Prupe.8G215500_v2.0.a1
pyrus_communis pycom05g17350 pycom10g15240
rosa_chinensis RchiOBHm_Chr6g0286631
rosa_laevigata RLG00000012554
rosa_multiflora Rmu_sc0000560.1_g000005
rosa_roxburghii Rroxscaffold_7G00182140
rosa_rugosa Rorug06G0181600 Rorug06G0181700
rosa_samantha Rh6BG297500 Rh6CG297900 Rh6DG289800
rosa_wichuraiana Rw6G025330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 428
Acc65I GGTACC 1 cut(s) 506
AccB1I GGYRCC 1 cut(s) 506
AccII CGCG 1 cut(s) 8
AciI CCGC 1 cut(s) 13
AclI AACGTT 1 cut(s) 477
AclWI GGATC 2 cut(s) 43, 488
AdeI CACNNNGTG 1 cut(s) 295
AfaI GTAC 2 cut(s) 257, 508
AfiI CCNNNNNNNGG 3 cut(s) 317, 397, 503
AgsI TTSAA 3 cut(s) 31, 42, 221
AjnI CCWGG 1 cut(s) 502
AluBI AGCT 4 cut(s) 65, 272, 353, 549
AluI AGCT 4 cut(s) 65, 272, 353, 549
Alw21I GWGCWC 1 cut(s) 145
AlwI GGATC 2 cut(s) 43, 488
AlwNI CAGNNNCTG 1 cut(s) 122
AoxI GGCC 1 cut(s) 248
ApeKI GCWGC 1 cut(s) 177
Asp718I GGTACC 1 cut(s) 506
AspS9I GGNCC 3 cut(s) 248, 320, 452
AsuC2I CCSGG 1 cut(s) 53
AsuHPI GGTGA 3 cut(s) 208, 223, 272
AvaII GGWCC 2 cut(s) 320, 452
BanI GGYRCC 1 cut(s) 506
BanII GRGCYC 1 cut(s) 80
Bbv12I GWGCWC 1 cut(s) 145
BbvI GCAGC 1 cut(s) 189
BccI CCATC 2 cut(s) 181, 233
BciT130I CCWGG 1 cut(s) 504
BcnI CCSGG 1 cut(s) 53
BfaI CTAG 1 cut(s) 269
BisI GCNGC 1 cut(s) 178
BlsI GCNGC 1 cut(s) 179
Bme1390I CCNGG 2 cut(s) 53, 504
Bme18I GGWCC 2 cut(s) 320, 452
BmgT120I GGNCC 3 cut(s) 248, 320, 452
BmiI GGNNCC 4 cut(s) 453, 454, 508, 528
BmrFI CCNGG 2 cut(s) 53, 504
BmrI ACTGGG 1 cut(s) 412
BmsI GCATC 1 cut(s) 352
BmuI ACTGGG 1 cut(s) 412
BpmI CTGGAG 1 cut(s) 374
BpuEI CTTGAG 2 cut(s) 31, 487
BpuMI CCSGG 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 251
Bsc4I CCNNNNNNNGG 3 cut(s) 317, 397, 503
Bse1I ACTGG 2 cut(s) 127, 407
Bse3DI GCAATG 1 cut(s) 367
BseBI CCWGG 1 cut(s) 504
BseDI CCNNGG 1 cut(s) 251
BseGI GGATG 1 cut(s) 176
BseLI CCNNNNNNNGG 3 cut(s) 317, 397, 503
BseMI GCAATG 1 cut(s) 367
BseMII CTCAG 1 cut(s) 306
BseNI ACTGG 2 cut(s) 127, 407
BseXI GCAGC 1 cut(s) 189
BseYI CCCAGC 1 cut(s) 65
Bsh1236I CGCG 1 cut(s) 8
BshFI GGCC 1 cut(s) 250
BshNI GGYRCC 1 cut(s) 506
BsiHKAI GWGCWC 1 cut(s) 145
BsiSI CCGG 1 cut(s) 53
BslFI GGGAC 5 cut(s) 82, 413, 419, 422, 465
BslI CCNNNNNNNGG 3 cut(s) 317, 397, 503
BsmFI GGGAC 5 cut(s) 82, 413, 419, 422, 465
BsnI GGCC 1 cut(s) 250
Bsp1286I GDGCHC 2 cut(s) 80, 145
Bsp143I GATC 3 cut(s) 35, 151, 493
Bsp19I CCATGG 1 cut(s) 251
Bsp68I TCGCGA 1 cut(s) 8
BspACI CCGC 1 cut(s) 13
BspANI GGCC 1 cut(s) 250
BspCNI CTCAG 1 cut(s) 305
BspFNI CGCG 1 cut(s) 8
BspLI GGNNCC 4 cut(s) 453, 454, 508, 528
BspPI GGATC 2 cut(s) 43, 488
BspQI GCTCTTC 1 cut(s) 539
BspT107I GGYRCC 1 cut(s) 506
BsrDI GCAATG 1 cut(s) 367
BsrI ACTGG 2 cut(s) 127, 407
BssECI CCNNGG 1 cut(s) 251
BssMI GATC 3 cut(s) 35, 151, 493
BssT1I CCWWGG 1 cut(s) 251
Bst2UI CCWGG 1 cut(s) 504
Bst4CI ACNGT 1 cut(s) 118
Bst6I CTCTTC 1 cut(s) 539
BstDEI CTNAG 1 cut(s) 292
BstDSI CCRYGG 1 cut(s) 251
BstF5I GGATG 1 cut(s) 176
BstFNI CGCG 1 cut(s) 8
BstKTI GATC 3 cut(s) 38, 154, 496
BstMBI GATC 3 cut(s) 35, 151, 493
BstMWI GCNNNNNNNGC 2 cut(s) 140, 269
BstNI CCWGG 1 cut(s) 504
BstNSI RCATGY 1 cut(s) 379
BstSCI CCNGG 2 cut(s) 51, 502
BstUI CGCG 1 cut(s) 8
BstV1I GCAGC 1 cut(s) 189
BstX2I RGATCY 1 cut(s) 35
BstYI RGATCY 1 cut(s) 35
BsuRI GGCC 1 cut(s) 250
BtgI CCRYGG 1 cut(s) 251
BtgZI GCGATG 1 cut(s) 200
BtsCI GGATG 1 cut(s) 176
BtsI GCAGTG 1 cut(s) 102
BtsIMutI CAGTG 3 cut(s) 102, 120, 300
BtuMI TCGCGA 1 cut(s) 8
CaiI CAGNNNCTG 1 cut(s) 122
Cfr13I GGNCC 3 cut(s) 248, 320, 452
CseI GACGC 1 cut(s) 431
Csp6I GTAC 2 cut(s) 256, 507
CviAII CATG 3 cut(s) 252, 376, 434
CviQI GTAC 2 cut(s) 256, 507
DdeI CTNAG 1 cut(s) 292
DpnI GATC 3 cut(s) 37, 153, 495
DpnII GATC 3 cut(s) 35, 151, 493
DraIII CACNNNGTG 1 cut(s) 295
DrdI GACNNNNNNGTC 1 cut(s) 428
DseDI GACNNNNNNGTC 1 cut(s) 428
Eam1104I CTCTTC 1 cut(s) 539
EarI CTCTTC 1 cut(s) 539
Eco130I CCWWGG 1 cut(s) 251
Eco24I GRGCYC 1 cut(s) 80
Eco47I GGWCC 2 cut(s) 320, 452
EcoO109I RGGNCCY 1 cut(s) 452
EcoRII CCWGG 1 cut(s) 502
EcoT14I CCWWGG 1 cut(s) 251
EcoT38I GRGCYC 1 cut(s) 80
ErhI CCWWGG 1 cut(s) 251
FaeI CATG 3 cut(s) 255, 379, 437
FaiI YATR 3 cut(s) 253, 377, 435
FaqI GGGAC 5 cut(s) 82, 413, 419, 422, 465
FatI CATG 3 cut(s) 251, 375, 433
Fnu4HI GCNGC 1 cut(s) 178
FokI GGATG 1 cut(s) 183
FriOI GRGCYC 1 cut(s) 80
Fsp4HI GCNGC 1 cut(s) 178
FspBI CTAG 1 cut(s) 269
GluI GCNGC 1 cut(s) 178
GsaI CCCAGC 1 cut(s) 69
GsuI CTGGAG 1 cut(s) 374
HaeIII GGCC 1 cut(s) 250
HapII CCGG 1 cut(s) 53
HgaI GACGC 1 cut(s) 431
Hin1II CATG 3 cut(s) 255, 379, 437
HinfI GANTC 2 cut(s) 336, 471
HpaII CCGG 1 cut(s) 53
HphI GGTGA 3 cut(s) 208, 223, 272
Hpy166II GTNNAC 1 cut(s) 18
Hpy188I TCNGA 2 cut(s) 230, 414
Hpy188III TCNNGA 3 cut(s) 7, 109, 146
Hpy8I GTNNAC 1 cut(s) 18
HpyAV CCTTC 2 cut(s) 187, 507
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4IV ACGT 1 cut(s) 477
HpyCH4V TGCA 1 cut(s) 343
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 269
HpyF3I CTNAG 1 cut(s) 292
HpySE526I ACGT 1 cut(s) 477
Hsp92II CATG 3 cut(s) 255, 379, 437
KflI GGGWCCC 1 cut(s) 452
KpnI GGTACC 1 cut(s) 510
Kzo9I GATC 3 cut(s) 35, 151, 493
LguI GCTCTTC 1 cut(s) 539
LpnPI CCDG 9 cut(s) 51, 66, 108, 318, 324, 388, 404, 489, 516
Lsp1109I GCAGC 1 cut(s) 189
LweI GCATC 1 cut(s) 352
MaeI CTAG 1 cut(s) 269
MaeII ACGT 1 cut(s) 477
MaeIII GTNAC 2 cut(s) 118, 478
MalI GATC 3 cut(s) 37, 153, 495
MboI GATC 3 cut(s) 35, 151, 493
MboII GAAGA 3 cut(s) 19, 30, 380
MfeI CAATTG 1 cut(s) 237
MflI RGATCY 1 cut(s) 35
MhlI GDGCHC 2 cut(s) 80, 145
MluCI AATT 1 cut(s) 237
MnlI CCTC 3 cut(s) 3, 55, 442
MspA1I CMGCKG 1 cut(s) 65
MspI CCGG 1 cut(s) 53
MspR9I CCNGG 2 cut(s) 53, 504
MunI CAATTG 1 cut(s) 237
MvaI CCWGG 1 cut(s) 504
MvnI CGCG 1 cut(s) 8
MwoI GCNNNNNNNGC 2 cut(s) 140, 269
NciI CCSGG 1 cut(s) 53
NcoI CCATGG 1 cut(s) 251
NdeII GATC 3 cut(s) 35, 151, 493
NlaIII CATG 3 cut(s) 255, 379, 437
NlaIV GGNNCC 4 cut(s) 453, 454, 508, 528
NmuCI GTSAC 1 cut(s) 118
NruI TCGCGA 1 cut(s) 8
NspI RCATGY 1 cut(s) 379
PciSI GCTCTTC 1 cut(s) 539
PfeI GAWTC 2 cut(s) 336, 471
PkrI GCNGC 1 cut(s) 179
PpuMI RGGWCCY 1 cut(s) 452
Psp1406I AACGTT 1 cut(s) 477
Psp5II RGGWCCY 1 cut(s) 452
Psp6I CCWGG 1 cut(s) 502
PspFI CCCAGC 1 cut(s) 65
PspGI CCWGG 1 cut(s) 502
PspN4I GGNNCC 4 cut(s) 453, 454, 508, 528
PspPI GGNCC 3 cut(s) 248, 320, 452
PspPPI RGGWCCY 1 cut(s) 452
PstNI CAGNNNCTG 1 cut(s) 122
PsuI RGATCY 1 cut(s) 35
PvuII CAGCTG 1 cut(s) 65
RruI TCGCGA 1 cut(s) 8
RsaI GTAC 2 cut(s) 257, 508
RsaNI GTAC 2 cut(s) 256, 507
SapI GCTCTTC 1 cut(s) 539
SatI GCNGC 1 cut(s) 178
Sau3AI GATC 3 cut(s) 35, 151, 493
Sau96I GGNCC 3 cut(s) 248, 320, 452
ScrFI CCNGG 2 cut(s) 53, 504
SduI GDGCHC 2 cut(s) 80, 145
SfaNI GCATC 1 cut(s) 352
SinI GGWCC 2 cut(s) 320, 452
SmlI CTYRAG 2 cut(s) 46, 466
SmoI CTYRAG 2 cut(s) 46, 466
Sse9I AATT 1 cut(s) 237
SsiI CCGC 1 cut(s) 13
SspMI CTAG 1 cut(s) 269
StyD4I CCNGG 2 cut(s) 51, 502
StyI CCWWGG 1 cut(s) 251
TaaI ACNGT 1 cut(s) 118
TaiI ACGT 1 cut(s) 480
TaqI TCGA 1 cut(s) 147
TasI AATT 1 cut(s) 237
TfiI GAWTC 2 cut(s) 336, 471
TscAI CASTG 3 cut(s) 102, 127, 300
TseFI GTSAC 1 cut(s) 118
TseI GCWGC 1 cut(s) 177
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 2 cut(s) 215, 294
TspRI CASTG 3 cut(s) 102, 127, 300
VpaK11BI GGWCC 2 cut(s) 320, 452
XceI RCATGY 1 cut(s) 379
XspI CTAG 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.