Prupe.8G215500_v2.0.a1

Cytochrome oxidase complex assembly protein 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0013482
Physical Location & Seq
Reverse (-)
19782162 .. 19784544
2383 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G215500.1

Sequence Viewer

Length: 573 bp
ATGCTGGCGAGGAGGTTGGTTTCGTTGTTCAACAAGAGCTCCTCAGCATCACAGATTTCCAGTTCGGCAAAGACTGTGGATGAAGGGAAGAGCTCGTTTGGTCGTAAAGCAGTGTCTTTTCTTCTGATTACGACTACGGGAGGTGTAGCTTTGAGCGCTCTTAATGATCTTGTTATTTATCAGAGCTGCAGCAGCAAGGCCATGGAGAAAGCCAGTAAGAACCCGGCAATCATAGAAGCTATAGGGGAACCTATTGTGAAGGGCTCATGGTACAATGCATCGCTTGCAGTAGCTCATAAGCGGCATTCTGTATCTTGCACATTTCCTGTTTCCGGACCACGAGGTGGGGGAGTCTTGGAGGTGAAGGCTGTACGTAATGGAGATGACACCTGGCTTTCATATCTCATACCTCGTGATTGGGACATACTAATCATGGATGCCCTTGTTCATGTTCCTGAAAATGAAGTGAAGCAGCAAACAATGCGGATCGGTATATCTGACACCCCTGCTCCAGCTTGCACAGCATGTACCGGTTGTAGCACTCAAGAATCAGTGAATCCAGAGAAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Coa1

Protein Analysis

191

Amino Acids

20.26

Weight (kDa)

8.83

Isoelectric Point (pI)

51.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013482)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20390 AT2G20390
fragaria_vesca FvH4_2g20510
malus_domestica MD05G1188900.v1.1 MD10G1176500.v1.1
prunus_persica Prupe.8G215500_v2.0.a1
pyrus_communis pycom05g17350 pycom10g15240
rosa_chinensis RchiOBHm_Chr6g0286631
rosa_laevigata RLG00000012554
rosa_multiflora Rmu_sc0000560.1_g000005
rosa_roxburghii Rroxscaffold_7G00182140
rosa_rugosa Rorug06G0181600 Rorug06G0181700
rosa_samantha Rh6BG297500 Rh6CG297900 Rh6DG289800
rosa_wichuraiana Rw6G025330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 344
AccIII TCCGGA 1 cut(s) 332
AciI CCGC 2 cut(s) 301, 484
AclWI GGATC 1 cut(s) 494
AdeI CACNNNGTG 1 cut(s) 344
AfaI GTAC 3 cut(s) 272, 372, 529
AfeI AGCGCT 1 cut(s) 157
AfiI CCNNNNNNNGG 2 cut(s) 332, 344
AgeI ACCGGT 1 cut(s) 530
AgsI TTSAA 1 cut(s) 31
AjnI CCWGG 1 cut(s) 389
AluBI AGCT 7 cut(s) 39, 93, 149, 186, 239, 293, 515
AluI AGCT 7 cut(s) 39, 93, 149, 186, 239, 293, 515
Alw21I GWGCWC 2 cut(s) 41, 95
AlwI GGATC 1 cut(s) 494
Aor13HI TCCGGA 1 cut(s) 332
Aor51HI AGCGCT 1 cut(s) 157
AoxI GGCC 1 cut(s) 198
ApeKI GCWGC 4 cut(s) 186, 189, 192, 472
AsiGI ACCGGT 1 cut(s) 530
AspLEI GCGC 1 cut(s) 158
AspS9I GGNCC 1 cut(s) 335
AsuC2I CCSGG 1 cut(s) 224
AsuHPI GGTGA 1 cut(s) 373
AvaII GGWCC 1 cut(s) 335
BanII GRGCYC 3 cut(s) 41, 95, 266
BauI CACGAG 2 cut(s) 339, 411
Bbv12I GWGCWC 2 cut(s) 41, 95
BbvCI CCTCAGC 1 cut(s) 43
BbvI GCAGC 4 cut(s) 173, 201, 204, 484
BciT130I CCWGG 1 cut(s) 391
BcnI CCSGG 1 cut(s) 224
BfmI CTRYAG 2 cut(s) 187, 240
BfoI RGCGCY 1 cut(s) 159
BisI GCNGC 5 cut(s) 187, 190, 193, 302, 473
BlsI GCNGC 5 cut(s) 188, 191, 194, 303, 474
Bme1390I CCNGG 2 cut(s) 224, 391
Bme18I GGWCC 1 cut(s) 335
BmgT120I GGNCC 1 cut(s) 335
BmiI GGNNCC 1 cut(s) 249
BmrFI CCNGG 2 cut(s) 224, 391
BmsI GCATC 3 cut(s) 56, 287, 427
BpmI CTGGAG 1 cut(s) 495
Bpu10I CCTNAGC 1 cut(s) 43
BpuEI CTTGAG 1 cut(s) 528
BpuMI CCSGG 1 cut(s) 224
BsaAI YACGTR 1 cut(s) 374
BsaJI CCNNGG 1 cut(s) 201
BsaWI WCCGGW 2 cut(s) 332, 530
BsaXI ACNNNNNCTCC 4 cut(s) 23, 53, 493, 523
Bsc4I CCNNNNNNNGG 2 cut(s) 332, 344
Bse118I RCCGGY 1 cut(s) 530
Bse1I ACTGG 2 cut(s) 60, 213
BseAI TCCGGA 1 cut(s) 332
BseBI CCWGG 1 cut(s) 391
BseDI CCNNGG 1 cut(s) 201
BseGI GGATG 2 cut(s) 85, 442
BseLI CCNNNNNNNGG 2 cut(s) 332, 344
BseMII CTCAG 1 cut(s) 57
BseNI ACTGG 2 cut(s) 60, 213
BseRI GAGGAG 2 cut(s) 25, 31
BseXI GCAGC 4 cut(s) 173, 201, 204, 484
BshFI GGCC 1 cut(s) 200
BshTI ACCGGT 1 cut(s) 530
BsiHKAI GWGCWC 2 cut(s) 41, 95
BsiSI CCGG 3 cut(s) 224, 333, 531
BslFI GGGAC 1 cut(s) 434
BslI CCNNNNNNNGG 2 cut(s) 332, 344
BsmFI GGGAC 1 cut(s) 434
BsmI GAATGC 1 cut(s) 304
BsnI GGCC 1 cut(s) 200
Bsp1286I GDGCHC 3 cut(s) 41, 95, 266
Bsp13I TCCGGA 1 cut(s) 332
Bsp143I GATC 2 cut(s) 166, 486
Bsp19I CCATGG 1 cut(s) 201
BspACI CCGC 2 cut(s) 301, 484
BspANI GGCC 1 cut(s) 200
BspCNI CTCAG 1 cut(s) 56
BspEI TCCGGA 1 cut(s) 332
BspLI GGNNCC 1 cut(s) 249
BspMAI CTGCAG 1 cut(s) 191
BspPI GGATC 1 cut(s) 494
BspQI GCTCTTC 1 cut(s) 83
BsrFI RCCGGY 1 cut(s) 530
BsrI ACTGG 2 cut(s) 60, 213
BssAI RCCGGY 1 cut(s) 530
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 2 cut(s) 166, 486
BssSI CACGAG 2 cut(s) 339, 411
BssT1I CCWWGG 1 cut(s) 201
Bst2BI CACGAG 2 cut(s) 339, 411
Bst2UI CCWGG 1 cut(s) 391
Bst4CI ACNGT 1 cut(s) 76
Bst6I CTCTTC 1 cut(s) 83
BstAPI GCANNNNNTGC 2 cut(s) 284, 481
BstBAI YACGTR 1 cut(s) 374
BstC8I GCNNGC 3 cut(s) 6, 285, 517
BstDEI CTNAG 1 cut(s) 43
BstDSI CCRYGG 1 cut(s) 201
BstF5I GGATG 2 cut(s) 85, 442
BstH2I RGCGCY 1 cut(s) 159
BstHHI GCGC 1 cut(s) 158
BstKTI GATC 2 cut(s) 169, 489
BstMBI GATC 2 cut(s) 166, 486
BstMWI GCNNNNNNNGC 5 cut(s) 155, 192, 284, 481, 521
BstNI CCWGG 1 cut(s) 391
BstNSI RCATGY 1 cut(s) 528
BstSCI CCNGG 2 cut(s) 222, 389
BstSFI CTRYAG 2 cut(s) 187, 240
BstSNI TACGTA 1 cut(s) 374
BstV1I GCAGC 4 cut(s) 173, 201, 204, 484
BsuRI GGCC 1 cut(s) 200
BtgI CCRYGG 1 cut(s) 201
BtgZI GCGATG 1 cut(s) 264
BtsCI GGATG 2 cut(s) 85, 442
BtsI GCAGTG 1 cut(s) 117
BtsIMutI CAGTG 2 cut(s) 117, 558
Cac8I GCNNGC 3 cut(s) 6, 285, 517
CfoI GCGC 1 cut(s) 158
Cfr10I RCCGGY 1 cut(s) 530
Cfr13I GGNCC 1 cut(s) 335
Csp6I GTAC 3 cut(s) 271, 371, 528
CspAI ACCGGT 1 cut(s) 530
CspCI CAANNNNNGTGG 2 cut(s) 57, 92
CviAII CATG 5 cut(s) 202, 267, 433, 449, 525
CviQI GTAC 3 cut(s) 271, 371, 528
DdeI CTNAG 1 cut(s) 43
DpnI GATC 2 cut(s) 168, 488
DpnII GATC 2 cut(s) 166, 486
DraIII CACNNNGTG 1 cut(s) 344
Eam1104I CTCTTC 1 cut(s) 83
EarI CTCTTC 1 cut(s) 83
Ecl136II GAGCTC 2 cut(s) 39, 93
Eco105I TACGTA 1 cut(s) 374
Eco130I CCWWGG 1 cut(s) 201
Eco24I GRGCYC 3 cut(s) 41, 95, 266
Eco47I GGWCC 1 cut(s) 335
Eco47III AGCGCT 1 cut(s) 157
Eco53kI GAGCTC 2 cut(s) 39, 93
EcoICRI GAGCTC 2 cut(s) 39, 93
EcoRII CCWGG 1 cut(s) 389
EcoT14I CCWWGG 1 cut(s) 201
EcoT22I ATGCAT 1 cut(s) 280
EcoT38I GRGCYC 3 cut(s) 41, 95, 266
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 5 cut(s) 205, 270, 436, 452, 528
FaqI GGGAC 1 cut(s) 434
FatI CATG 5 cut(s) 201, 266, 432, 448, 524
Fnu4HI GCNGC 5 cut(s) 187, 190, 193, 302, 473
FokI GGATG 2 cut(s) 92, 449
FriOI GRGCYC 3 cut(s) 41, 95, 266
Fsp4HI GCNGC 5 cut(s) 187, 190, 193, 302, 473
GlaI GCGC 1 cut(s) 157
GluI GCNGC 5 cut(s) 187, 190, 193, 302, 473
GsuI CTGGAG 1 cut(s) 495
HaeII RGCGCY 1 cut(s) 159
HaeIII GGCC 1 cut(s) 200
HapII CCGG 3 cut(s) 224, 333, 531
HhaI GCGC 1 cut(s) 158
Hin1II CATG 5 cut(s) 205, 270, 436, 452, 528
Hin6I GCGC 1 cut(s) 156
HinP1I GCGC 1 cut(s) 156
HinfI GANTC 3 cut(s) 351, 548, 556
HpaII CCGG 3 cut(s) 224, 333, 531
HphI GGTGA 1 cut(s) 373
Hpy188I TCNGA 3 cut(s) 126, 183, 499
Hpy188III TCNNGA 5 cut(s) 333, 413, 455, 545, 560
HpyAV CCTTC 3 cut(s) 77, 253, 358
HpyCH4III ACNGT 1 cut(s) 76
HpyCH4IV ACGT 1 cut(s) 373
HpyCH4V TGCA 5 cut(s) 189, 278, 287, 318, 519
HpyF10VI GCNNNNNNNGC 5 cut(s) 155, 192, 284, 481, 521
HpyF3I CTNAG 1 cut(s) 43
HpySE526I ACGT 1 cut(s) 373
Hsp92II CATG 5 cut(s) 205, 270, 436, 452, 528
HspAI GCGC 1 cut(s) 156
Kpn2I TCCGGA 1 cut(s) 332
Kzo9I GATC 2 cut(s) 166, 486
LguI GCTCTTC 1 cut(s) 83
LmnI GCTCC 2 cut(s) 44, 514
Lsp1109I GCAGC 4 cut(s) 173, 201, 204, 484
LweI GCATC 3 cut(s) 56, 287, 427
MaeII ACGT 1 cut(s) 373
MalI GATC 2 cut(s) 168, 488
MboI GATC 2 cut(s) 166, 486
MboII GAAGA 2 cut(s) 100, 113
MhlI GDGCHC 3 cut(s) 41, 95, 266
MlyI GAGTC 1 cut(s) 360
MnlI CCTC 7 cut(s) 3, 6, 52, 134, 335, 352, 420
Mph1103I ATGCAT 1 cut(s) 280
MroI TCCGGA 1 cut(s) 332
MseI TTAA 1 cut(s) 162
MspI CCGG 3 cut(s) 224, 333, 531
MspR9I CCNGG 2 cut(s) 224, 391
Mva1269I GAATGC 1 cut(s) 304
MvaI CCWGG 1 cut(s) 391
MwoI GCNNNNNNNGC 5 cut(s) 155, 192, 284, 481, 521
NciI CCSGG 1 cut(s) 224
NcoI CCATGG 1 cut(s) 201
NdeII GATC 2 cut(s) 166, 486
NlaIII CATG 5 cut(s) 205, 270, 436, 452, 528
NlaIV GGNNCC 1 cut(s) 249
NsiI ATGCAT 1 cut(s) 280
NspI RCATGY 1 cut(s) 528
PciSI GCTCTTC 1 cut(s) 83
PctI GAATGC 1 cut(s) 304
PfeI GAWTC 2 cut(s) 548, 556
PflMI CCANNNNNTGG 1 cut(s) 344
PinAI ACCGGT 1 cut(s) 530
PkrI GCNGC 5 cut(s) 188, 191, 194, 303, 474
PleI GAGTC 1 cut(s) 359
PpsI GAGTC 1 cut(s) 359
Ppu21I YACGTR 1 cut(s) 374
Psp124BI GAGCTC 2 cut(s) 41, 95
Psp6I CCWGG 1 cut(s) 389
PspGI CCWGG 1 cut(s) 389
PspN4I GGNNCC 1 cut(s) 249
PspPI GGNCC 1 cut(s) 335
PstI CTGCAG 1 cut(s) 191
RsaI GTAC 3 cut(s) 272, 372, 529
RsaNI GTAC 3 cut(s) 271, 371, 528
SacI GAGCTC 2 cut(s) 41, 95
SapI GCTCTTC 1 cut(s) 83
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 5 cut(s) 187, 190, 193, 302, 473
Sau3AI GATC 2 cut(s) 166, 486
Sau96I GGNCC 1 cut(s) 335
SchI GAGTC 1 cut(s) 360
ScrFI CCNGG 2 cut(s) 224, 391
SduI GDGCHC 3 cut(s) 41, 95, 266
SfaNI GCATC 3 cut(s) 56, 287, 427
SfcI CTRYAG 2 cut(s) 187, 240
SinI GGWCC 1 cut(s) 335
SmlI CTYRAG 1 cut(s) 543
SmoI CTYRAG 1 cut(s) 543
SnaBI TACGTA 1 cut(s) 374
SsiI CCGC 2 cut(s) 301, 484
SstI GAGCTC 2 cut(s) 41, 95
StyD4I CCNGG 2 cut(s) 222, 389
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 1 cut(s) 76
TaiI ACGT 1 cut(s) 376
TauI GCSGC 1 cut(s) 304
TfiI GAWTC 2 cut(s) 548, 556
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 2 cut(s) 117, 558
TseI GCWGC 4 cut(s) 186, 189, 192, 472
TspDTI ATGAA 4 cut(s) 96, 387, 437, 477
TspRI CASTG 2 cut(s) 117, 558
Van91I CCANNNNNTGG 1 cut(s) 344
VpaK11BI GGWCC 1 cut(s) 335
XceI RCATGY 1 cut(s) 528
Zsp2I ATGCAT 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.