MD10G1176500.v1.1

Cytochrome oxidase complex assembly protein 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0013482
Physical Location & Seq
Reverse (-)
26876673 .. 26879041
2369 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1176500.v1.1.491

Sequence Viewer

Length: 582 bp
ATGCTGGCGAGGAGGATGGTTTCGTTGTTCAACAGGAGCTCCTCAGCACCACTCTTTTCCAGTTCGGCGGCGAAGACGGTGGATGAAGGGAAGAGCACGTCGTCTTTTGGTCGGAAAGCGTTGTCTTTTATTCTGATTACCACTACCGGCGGTGTTGCTTTGAGTGCTCTTAATGATCTTGTGATTTATCAAAGCTGCAGCAGCAAGGCCATGGAGAAAGCCAGTAAGAATCCAGCAATCATAGAGGCTATAGGGGAACCTATTGTGAAGGGCCCATGGTACAATGCATCGCTTGCAGTAGCTCATAAACGGCATTCTGTATCTTGCACATTTCCTGTGTCTGGACCGCGAGGTGCTGGAGTCTTGGAGGTGAAGGCTGTACGTAATGGAGATGACACCTGGCTTTCGTATCTCATCCCTCGCGATTGGGACATCCTAATCATGGATGCCCTCGTCCATATTCCCGGAAATGAAGAGAAGCAGCGAACGGTGCGAATTGGTATTTCCGACAGTGCCCCCAGTCCTGCTTGCACGGCATGCACCGGTTGTCCCACTCAAGTATCGGCGAGTCCGAAGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Coa1

Protein Analysis

194

Amino Acids

20.45

Weight (kDa)

9.2

Isoelectric Point (pI)

56.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Coa1 PF08695 43 - 132 9.6e-07 Cytochrome oxidase complex assembly protein 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013482)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20390 AT2G20390
fragaria_vesca FvH4_2g20510
malus_domestica MD05G1188900.v1.1 MD10G1176500.v1.1
prunus_persica Prupe.8G215500_v2.0.a1
pyrus_communis pycom05g17350 pycom10g15240
rosa_chinensis RchiOBHm_Chr6g0286631
rosa_laevigata RLG00000012554
rosa_multiflora Rmu_sc0000560.1_g000005
rosa_roxburghii Rroxscaffold_7G00182140
rosa_rugosa Rorug06G0181600 Rorug06G0181700
rosa_samantha Rh6BG297500 Rh6CG297900 Rh6DG289800
rosa_wichuraiana Rw6G025330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 349, 423
AciI CCGC 3 cut(s) 68, 150, 347
AfaI GTAC 2 cut(s) 281, 381
AfiI CCNNNNNNNGG 2 cut(s) 341, 442
AgeI ACCGGT 1 cut(s) 542
AgsI TTSAA 1 cut(s) 31
AjiI CACGTC 1 cut(s) 99
AjnI CCWGG 1 cut(s) 398
AluBI AGCT 3 cut(s) 39, 195, 302
AluI AGCT 3 cut(s) 39, 195, 302
Alw21I GWGCWC 3 cut(s) 41, 98, 169
AoxI GGCC 2 cut(s) 207, 271
ApaI GGGCCC 1 cut(s) 275
ApeKI GCWGC 4 cut(s) 195, 198, 201, 481
AsiGI ACCGGT 1 cut(s) 542
AspS9I GGNCC 3 cut(s) 271, 272, 344
AsuC2I CCSGG 1 cut(s) 465
AsuHPI GGTGA 1 cut(s) 382
AvaII GGWCC 1 cut(s) 344
BaeGI GKGCMC 2 cut(s) 275, 517
BaeI ACNNNNGTAYC 2 cut(s) 543, 576
BanII GRGCYC 2 cut(s) 41, 275
BbsI GAAGAC 1 cut(s) 80
Bbv12I GWGCWC 3 cut(s) 41, 98, 169
BbvCI CCTCAGC 1 cut(s) 43
BbvI GCAGC 4 cut(s) 182, 210, 213, 493
BccI CCATC 1 cut(s) 10
BceAI ACGGC 2 cut(s) 326, 549
BciT130I CCWGG 1 cut(s) 400
BcnI CCSGG 1 cut(s) 465
BfmI CTRYAG 2 cut(s) 196, 249
BisI GCNGC 5 cut(s) 69, 196, 199, 202, 482
BlsI GCNGC 5 cut(s) 70, 197, 200, 203, 483
Bme1390I CCNGG 2 cut(s) 400, 465
Bme18I GGWCC 1 cut(s) 344
BmgBI CACGTC 1 cut(s) 99
BmgT120I GGNCC 3 cut(s) 271, 272, 344
BmiI GGNNCC 2 cut(s) 258, 273
BmrFI CCNGG 2 cut(s) 400, 465
BmrI ACTGGG 1 cut(s) 513
BmsI GCATC 2 cut(s) 296, 436
BmuI ACTGGG 1 cut(s) 513
BpiI GAAGAC 1 cut(s) 80
BpmI CTGGAG 1 cut(s) 378
Bpu10I CCTNAGC 1 cut(s) 43
BpuEI CTTGAG 1 cut(s) 540
BpuMI CCSGG 1 cut(s) 465
BsaAI YACGTR 1 cut(s) 383
BsaJI CCNNGG 2 cut(s) 210, 275
BsaWI WCCGGW 1 cut(s) 542
BsaXI ACNNNNNCTCC 2 cut(s) 23, 53
Bsc4I CCNNNNNNNGG 2 cut(s) 341, 442
Bse118I RCCGGY 2 cut(s) 146, 542
Bse1I ACTGG 3 cut(s) 60, 222, 519
BseBI CCWGG 1 cut(s) 400
BseDI CCNNGG 2 cut(s) 210, 275
BseGI GGATG 5 cut(s) 21, 88, 414, 432, 451
BseLI CCNNNNNNNGG 2 cut(s) 341, 442
BseMII CTCAG 1 cut(s) 57
BseNI ACTGG 3 cut(s) 60, 222, 519
BseRI GAGGAG 2 cut(s) 25, 31
BseSI GKGCMC 2 cut(s) 275, 517
BseXI GCAGC 4 cut(s) 182, 210, 213, 493
Bsh1236I CGCG 2 cut(s) 349, 423
BshFI GGCC 2 cut(s) 209, 273
BshTI ACCGGT 1 cut(s) 542
BsiHKAI GWGCWC 3 cut(s) 41, 98, 169
BsiSI CCGG 3 cut(s) 147, 465, 543
BslFI GGGAC 2 cut(s) 443, 534
BslI CCNNNNNNNGG 2 cut(s) 341, 442
BsmFI GGGAC 2 cut(s) 443, 534
BsmI GAATGC 1 cut(s) 313
BsnI GGCC 2 cut(s) 209, 273
Bsp120I GGGCCC 1 cut(s) 271
Bsp1286I GDGCHC 5 cut(s) 41, 98, 169, 275, 517
Bsp143I GATC 1 cut(s) 175
Bsp19I CCATGG 2 cut(s) 210, 275
Bsp68I TCGCGA 1 cut(s) 423
BspACI CCGC 3 cut(s) 68, 150, 347
BspANI GGCC 2 cut(s) 209, 273
BspCNI CTCAG 1 cut(s) 56
BspFNI CGCG 2 cut(s) 349, 423
BspLI GGNNCC 2 cut(s) 258, 273
BspMAI CTGCAG 1 cut(s) 200
BspQI GCTCTTC 1 cut(s) 86
BsrFI RCCGGY 2 cut(s) 146, 542
BsrI ACTGG 3 cut(s) 60, 222, 519
BssAI RCCGGY 2 cut(s) 146, 542
BssECI CCNNGG 2 cut(s) 210, 275
BssMI GATC 1 cut(s) 175
BssT1I CCWWGG 2 cut(s) 210, 275
Bst2UI CCWGG 1 cut(s) 400
Bst4CI ACNGT 3 cut(s) 79, 490, 512
Bst6I CTCTTC 2 cut(s) 86, 468
BstAPI GCANNNNNTGC 2 cut(s) 293, 537
BstBAI YACGTR 1 cut(s) 383
BstC8I GCNNGC 4 cut(s) 6, 294, 529, 538
BstDEI CTNAG 1 cut(s) 43
BstDSI CCRYGG 2 cut(s) 210, 275
BstF5I GGATG 5 cut(s) 21, 88, 414, 432, 451
BstFNI CGCG 2 cut(s) 349, 423
BstKTI GATC 1 cut(s) 178
BstMBI GATC 1 cut(s) 175
BstMWI GCNNNNNNNGC 6 cut(s) 164, 201, 293, 490, 533, 537
BstNI CCWGG 1 cut(s) 400
BstNSI RCATGY 1 cut(s) 540
BstSCI CCNGG 2 cut(s) 398, 463
BstSFI CTRYAG 2 cut(s) 196, 249
BstSLI GKGCMC 2 cut(s) 275, 517
BstSNI TACGTA 1 cut(s) 383
BstUI CGCG 2 cut(s) 349, 423
BstV1I GCAGC 4 cut(s) 182, 210, 213, 493
BstV2I GAAGAC 1 cut(s) 80
BsuRI GGCC 2 cut(s) 209, 273
BtgI CCRYGG 2 cut(s) 210, 275
BtgZI GCGATG 1 cut(s) 273
BtrI CACGTC 1 cut(s) 99
BtsCI GGATG 5 cut(s) 21, 88, 414, 432, 451
BtsIMutI CAGTG 1 cut(s) 517
BtuMI TCGCGA 1 cut(s) 423
Cac8I GCNNGC 4 cut(s) 6, 294, 529, 538
Cfr10I RCCGGY 2 cut(s) 146, 542
Cfr13I GGNCC 3 cut(s) 271, 272, 344
Csp6I GTAC 2 cut(s) 280, 380
CspAI ACCGGT 1 cut(s) 542
CviAII CATG 4 cut(s) 211, 276, 442, 537
CviJI RGCY 9 cut(s) 39, 195, 209, 221, 248, 273, 302, 377, 403
CviKI_1 RGCY 9 cut(s) 39, 195, 209, 221, 248, 273, 302, 377, 403
CviQI GTAC 2 cut(s) 280, 380
DdeI CTNAG 1 cut(s) 43
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
Eam1104I CTCTTC 2 cut(s) 86, 468
EarI CTCTTC 2 cut(s) 86, 468
Ecl136II GAGCTC 1 cut(s) 39
Eco105I TACGTA 1 cut(s) 383
Eco130I CCWWGG 2 cut(s) 210, 275
Eco24I GRGCYC 2 cut(s) 41, 275
Eco47I GGWCC 1 cut(s) 344
Eco53kI GAGCTC 1 cut(s) 39
EcoICRI GAGCTC 1 cut(s) 39
EcoO109I RGGNCCY 1 cut(s) 271
EcoRII CCWGG 1 cut(s) 398
EcoT14I CCWWGG 2 cut(s) 210, 275
EcoT22I ATGCAT 1 cut(s) 289
EcoT38I GRGCYC 2 cut(s) 41, 275
ErhI CCWWGG 2 cut(s) 210, 275
FaeI CATG 4 cut(s) 214, 279, 445, 540
FaiI YATR 8 cut(s) 212, 242, 251, 277, 306, 443, 459, 538
FaqI GGGAC 2 cut(s) 443, 534
FatI CATG 4 cut(s) 210, 275, 441, 536
Fnu4HI GCNGC 5 cut(s) 69, 196, 199, 202, 482
FokI GGATG 5 cut(s) 28, 95, 401, 419, 458
FriOI GRGCYC 2 cut(s) 41, 275
Fsp4HI GCNGC 5 cut(s) 69, 196, 199, 202, 482
GluI GCNGC 5 cut(s) 69, 196, 199, 202, 482
GsuI CTGGAG 1 cut(s) 378
HaeIII GGCC 2 cut(s) 209, 273
HapII CCGG 3 cut(s) 147, 465, 543
Hin1II CATG 4 cut(s) 214, 279, 445, 540
HinfI GANTC 3 cut(s) 229, 360, 568
HpaII CCGG 3 cut(s) 147, 465, 543
HphI GGTGA 1 cut(s) 382
Hpy188I TCNGA 4 cut(s) 114, 135, 508, 573
Hpy188III TCNNGA 2 cut(s) 342, 422
Hpy99I CGWCG 1 cut(s) 103
HpyAV CCTTC 3 cut(s) 80, 262, 367
HpyCH4III ACNGT 3 cut(s) 79, 490, 512
HpyCH4IV ACGT 2 cut(s) 98, 382
HpyCH4V TGCA 6 cut(s) 198, 287, 296, 327, 531, 540
HpyF10VI GCNNNNNNNGC 6 cut(s) 164, 201, 293, 490, 533, 537
HpyF3I CTNAG 1 cut(s) 43
HpySE526I ACGT 2 cut(s) 98, 382
Hsp92II CATG 4 cut(s) 214, 279, 445, 540
Kzo9I GATC 1 cut(s) 175
LguI GCTCTTC 1 cut(s) 86
LmnI GCTCC 2 cut(s) 36, 44
Lsp1109I GCAGC 4 cut(s) 182, 210, 213, 493
LweI GCATC 2 cut(s) 296, 436
MaeII ACGT 2 cut(s) 98, 382
MalI GATC 1 cut(s) 177
MboI GATC 1 cut(s) 175
MboII GAAGA 3 cut(s) 85, 103, 485
MhlI GDGCHC 5 cut(s) 41, 98, 169, 275, 517
MluCI AATT 1 cut(s) 495
MlyI GAGTC 2 cut(s) 369, 577
MmeI TCCRAC 2 cut(s) 92, 531
MnlI CCTC 8 cut(s) 3, 6, 52, 238, 344, 361, 429, 461
Mph1103I ATGCAT 1 cut(s) 289
MseI TTAA 1 cut(s) 171
MspI CCGG 3 cut(s) 147, 465, 543
MspR9I CCNGG 2 cut(s) 400, 465
Mva1269I GAATGC 1 cut(s) 313
MvaI CCWGG 1 cut(s) 400
MvnI CGCG 2 cut(s) 349, 423
MwoI GCNNNNNNNGC 6 cut(s) 164, 201, 293, 490, 533, 537
NciI CCSGG 1 cut(s) 465
NcoI CCATGG 2 cut(s) 210, 275
NdeII GATC 1 cut(s) 175
NlaIII CATG 4 cut(s) 214, 279, 445, 540
NlaIV GGNNCC 2 cut(s) 258, 273
NruI TCGCGA 1 cut(s) 423
NsiI ATGCAT 1 cut(s) 289
NspI RCATGY 1 cut(s) 540
PaeI GCATGC 1 cut(s) 540
PciSI GCTCTTC 1 cut(s) 86
PcsI WCGNNNNNNNCGW 1 cut(s) 569
PctI GAATGC 1 cut(s) 313
PfeI GAWTC 1 cut(s) 229
PfoI TCCNGGA 1 cut(s) 463
PinAI ACCGGT 1 cut(s) 542
PkrI GCNGC 5 cut(s) 70, 197, 200, 203, 483
PleI GAGTC 2 cut(s) 368, 576
PpsI GAGTC 2 cut(s) 368, 576
Ppu21I YACGTR 1 cut(s) 383
Psp124BI GAGCTC 1 cut(s) 41
Psp6I CCWGG 1 cut(s) 398
PspGI CCWGG 1 cut(s) 398
PspN4I GGNNCC 2 cut(s) 258, 273
PspOMI GGGCCC 1 cut(s) 271
PspPI GGNCC 3 cut(s) 271, 272, 344
PstI CTGCAG 1 cut(s) 200
RruI TCGCGA 1 cut(s) 423
RsaI GTAC 2 cut(s) 281, 381
RsaNI GTAC 2 cut(s) 280, 380
SacI GAGCTC 1 cut(s) 41
SapI GCTCTTC 1 cut(s) 86
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 5 cut(s) 69, 196, 199, 202, 482
Sau3AI GATC 1 cut(s) 175
Sau96I GGNCC 3 cut(s) 271, 272, 344
SchI GAGTC 2 cut(s) 369, 577
ScrFI CCNGG 2 cut(s) 400, 465
SduI GDGCHC 5 cut(s) 41, 98, 169, 275, 517
SetI ASST 9 cut(s) 41, 101, 197, 262, 304, 355, 372, 385, 401
SfaNI GCATC 2 cut(s) 296, 436
SfcI CTRYAG 2 cut(s) 196, 249
SinI GGWCC 1 cut(s) 344
SmlI CTYRAG 1 cut(s) 555
SmoI CTYRAG 1 cut(s) 555
SnaBI TACGTA 1 cut(s) 383
SphI GCATGC 1 cut(s) 540
Sse9I AATT 1 cut(s) 495
SsiI CCGC 3 cut(s) 68, 150, 347
SstI GAGCTC 1 cut(s) 41
StyD4I CCNGG 2 cut(s) 398, 463
StyI CCWWGG 2 cut(s) 210, 275
TaaI ACNGT 3 cut(s) 79, 490, 512
TaiI ACGT 2 cut(s) 101, 385
TasI AATT 1 cut(s) 495
TauI GCSGC 1 cut(s) 71
TfiI GAWTC 1 cut(s) 229
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TscAI CASTG 1 cut(s) 517
TseI GCWGC 4 cut(s) 195, 198, 201, 481
TspDTI ATGAA 2 cut(s) 99, 486
TspRI CASTG 1 cut(s) 517
VpaK11BI GGWCC 1 cut(s) 344
XceI RCATGY 1 cut(s) 540
Zsp2I ATGCAT 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.