Rorug06G0181600

Cytochrome oxidase complex assembly protein 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0013482
Physical Location & Seq
Forward (+)
28653444 .. 28653883
440 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0181600.1

Sequence Viewer

Length: 309 bp
ATGGATGCTGACAACTCGAATGGCGCCTACGAGAAAAAGTGCCTAAACAATTGTTCTTGCCAGGCTTATGCATTTGTAGATAAAATAGGGTGTCTGGTCTGGTCCAGAGATCTAATTGATATACAACAGTTTCCGGTTGGTGGAGACAATCTGACCATCTATAAAGGAAAGCCAATAAAGCTAATTGCCTCCGTCACAGCTATTTGTCATTCCAAATTTCATTCCAATCAAATGATCTTTTATCCCTCAGTAACATTATCTCAATTCCATTCGATAATGTGCACTATTTCTTCCCTCAGTTGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Coa1

Protein Analysis

102

Amino Acids

11.34

Weight (kDa)

7.57

Isoelectric Point (pI)

30.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAN_2 PF08276 11 - 41 1.6e-10 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013482)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20390 AT2G20390
fragaria_vesca FvH4_2g20510
malus_domestica MD05G1188900.v1.1 MD10G1176500.v1.1
prunus_persica Prupe.8G215500_v2.0.a1
pyrus_communis pycom05g17350 pycom10g15240
rosa_chinensis RchiOBHm_Chr6g0286631
rosa_laevigata RLG00000012554
rosa_multiflora Rmu_sc0000560.1_g000005
rosa_roxburghii Rroxscaffold_7G00182140
rosa_rugosa Rorug06G0181600 Rorug06G0181700
rosa_samantha Rh6BG297500 Rh6CG297900 Rh6DG289800
rosa_wichuraiana Rw6G025330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 23
AcsI RAATTY 1 cut(s) 215
AcyI GRCGYC 1 cut(s) 24
AfiI CCNNNNNNNGG 1 cut(s) 140
AjnI CCWGG 1 cut(s) 60
AluBI AGCT 2 cut(s) 181, 200
AluI AGCT 2 cut(s) 181, 200
Alw21I GWGCWC 1 cut(s) 284
Alw26I GTCTC 1 cut(s) 138
Alw44I GTGCAC 1 cut(s) 280
ApaLI GTGCAC 1 cut(s) 280
ApoI RAATTY 1 cut(s) 215
AspLEI GCGC 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 102
AvaII GGWCC 1 cut(s) 102
BaeGI GKGCMC 1 cut(s) 284
BanI GGYRCC 1 cut(s) 23
Bbv12I GWGCWC 1 cut(s) 284
BccI CCATC 1 cut(s) 164
BciT130I CCWGG 1 cut(s) 62
BcoDI GTCTC 1 cut(s) 138
BfoI RGCGCY 1 cut(s) 27
BglII AGATCT 1 cut(s) 109
Bme1390I CCNGG 1 cut(s) 62
Bme18I GGWCC 1 cut(s) 102
BmgT120I GGNCC 1 cut(s) 102
BmiI GGNNCC 1 cut(s) 25
BmrFI CCNGG 1 cut(s) 62
BsaHI GRCGYC 1 cut(s) 24
BsaWI WCCGGW 1 cut(s) 133
Bsc4I CCNNNNNNNGG 1 cut(s) 140
BseBI CCWGG 1 cut(s) 62
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 140
BseMII CTCAG 1 cut(s) 261
BseSI GKGCMC 1 cut(s) 284
BshNI GGYRCC 1 cut(s) 23
BsiHKAI GWGCWC 1 cut(s) 284
BsiSI CCGG 1 cut(s) 134
BslI CCNNNNNNNGG 1 cut(s) 140
BsmAI GTCTC 1 cut(s) 138
Bsp1286I GDGCHC 1 cut(s) 284
Bsp143I GATC 2 cut(s) 109, 234
BspCNI CTCAG 2 cut(s) 260, 309
BspLI GGNNCC 1 cut(s) 25
BspT107I GGYRCC 1 cut(s) 23
BssMI GATC 2 cut(s) 109, 234
BssNI GRCGYC 1 cut(s) 24
Bst2UI CCWGG 1 cut(s) 62
Bst4CI ACNGT 1 cut(s) 129
BstACI GRCGYC 1 cut(s) 24
BstDEI CTNAG 2 cut(s) 247, 296
BstF5I GGATG 1 cut(s) 10
BstH2I RGCGCY 1 cut(s) 27
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 2 cut(s) 112, 237
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 2 cut(s) 109, 234
BstMWI GCNNNNNNNGC 1 cut(s) 178
BstNI CCWGG 1 cut(s) 62
BstSCI CCNGG 1 cut(s) 60
BstSLI GKGCMC 1 cut(s) 284
BstX2I RGATCY 1 cut(s) 109
BstYI RGATCY 1 cut(s) 109
BtsCI GGATG 1 cut(s) 10
CfoI GCGC 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 102
CviJI RGCY 4 cut(s) 65, 172, 181, 200
CviKI_1 RGCY 4 cut(s) 65, 172, 181, 200
DdeI CTNAG 2 cut(s) 247, 296
DinI GGCGCC 1 cut(s) 25
DpnI GATC 2 cut(s) 111, 236
DpnII GATC 2 cut(s) 109, 234
Eco47I GGWCC 1 cut(s) 102
EcoRII CCWGG 1 cut(s) 60
EcoT22I ATGCAT 1 cut(s) 73
EgeI GGCGCC 1 cut(s) 25
EheI GGCGCC 1 cut(s) 25
FaiI YATR 3 cut(s) 69, 122, 162
FokI GGATG 1 cut(s) 17
GlaI GCGC 1 cut(s) 25
HaeII RGCGCY 1 cut(s) 27
HapII CCGG 1 cut(s) 134
HhaI GCGC 1 cut(s) 26
Hin1I GRCGYC 1 cut(s) 24
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HpaII CCGG 1 cut(s) 134
Hpy166II GTNNAC 1 cut(s) 282
Hpy188I TCNGA 1 cut(s) 153
Hpy188III TCNNGA 1 cut(s) 105
Hpy8I GTNNAC 1 cut(s) 282
HpyCH4III ACNGT 1 cut(s) 129
HpyCH4V TGCA 2 cut(s) 71, 282
HpyF10VI GCNNNNNNNGC 1 cut(s) 178
HpyF3I CTNAG 2 cut(s) 247, 296
Hsp92I GRCGYC 1 cut(s) 24
HspAI GCGC 1 cut(s) 24
KasI GGCGCC 1 cut(s) 23
Kzo9I GATC 2 cut(s) 109, 234
LpnPI CCDG 6 cut(s) 47, 74, 80, 85, 118, 147
MaeIII GTNAC 2 cut(s) 193, 250
MalI GATC 2 cut(s) 111, 236
MboI GATC 2 cut(s) 109, 234
MboII GAAGA 1 cut(s) 282
MfeI CAATTG 1 cut(s) 49
MflI RGATCY 1 cut(s) 109
MhlI GDGCHC 1 cut(s) 284
MluCI AATT 5 cut(s) 49, 114, 183, 215, 263
Mly113I GGCGCC 1 cut(s) 24
MnlI CCTC 3 cut(s) 199, 256, 305
Mph1103I ATGCAT 1 cut(s) 73
MspI CCGG 1 cut(s) 134
MspR9I CCNGG 1 cut(s) 62
MunI CAATTG 1 cut(s) 49
MvaI CCWGG 1 cut(s) 62
MwoI GCNNNNNNNGC 1 cut(s) 178
NarI GGCGCC 1 cut(s) 24
NdeII GATC 2 cut(s) 109, 234
NlaIV GGNNCC 1 cut(s) 25
NmuCI GTSAC 1 cut(s) 193
NsiI ATGCAT 1 cut(s) 73
PluTI GGCGCC 1 cut(s) 27
Psp6I CCWGG 1 cut(s) 60
PspGI CCWGG 1 cut(s) 60
PspN4I GGNNCC 1 cut(s) 25
PspPI GGNCC 1 cut(s) 102
PsuI RGATCY 1 cut(s) 109
Sau3AI GATC 2 cut(s) 109, 234
Sau96I GGNCC 1 cut(s) 102
ScrFI CCNGG 1 cut(s) 62
SduI GDGCHC 1 cut(s) 284
SetI ASST 2 cut(s) 183, 202
SfoI GGCGCC 1 cut(s) 25
SgeI CNNG 9 cut(s) 28, 43, 69, 73, 74, 107, 112, 117, 146
SinI GGWCC 1 cut(s) 102
Sse9I AATT 5 cut(s) 49, 114, 183, 215, 263
SspDI GGCGCC 1 cut(s) 23
StyD4I CCNGG 1 cut(s) 60
TaaI ACNGT 1 cut(s) 129
TaqI TCGA 2 cut(s) 17, 272
TasI AATT 5 cut(s) 49, 114, 183, 215, 263
TseFI GTSAC 1 cut(s) 193
Tsp45I GTSAC 1 cut(s) 193
TspDTI ATGAA 1 cut(s) 209
TspGWI ACGGA 1 cut(s) 181
VneI GTGCAC 1 cut(s) 280
VpaK11BI GGWCC 1 cut(s) 102
XapI RAATTY 1 cut(s) 215
Zsp2I ATGCAT 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.