Rorug06G0181700

Cytochrome oxidase complex assembly protein 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0013482
Physical Location & Seq
Reverse (-)
28654496 .. 28657855
3360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0181700.1

Sequence Viewer

Length: 492 bp
ATGGAGCAGATTCGGTCTGGCATGGAAGCTCACCTGGACCAAGTAGCAGATCTCGTCCAGAAACTCTCCGCAGACTTCCGCTCTGGTCTTGGACCCGCTTTAGATAACTTCATTGGTTTTTTCCACGCTATCGACTGGAAGGAACCATGGTTGATGGGTTTAGTGGGACTCCACTTTCTGTTGTTGGTAATATCCATTCTCTCCAGGAAGAATCTTAACTTCCAAATGCTTTTGTTCCTTACGGCCTTGGCTGGAGTTTATCTTGCTGAGAGGTTCAATGGTTTCCTGGGTCAGAACTGGAAGAGTTTCGCCGGCCAGAATTACTTTGATTCAAATGGAGTTTTTTTGTCAGTACTTTGGTCTGGGCCTCTTCTCGTAATTGCAATTATAATTTTGATAAACACGCTCTTTTCCTTATGTCACCTGATTGTCAAGTGGAAAAGAGCTGAGCTGAGACACCGTGCACGGCTTTCTCAGAATAAGCAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Coa1

Protein Analysis

163

Amino Acids

18.56

Weight (kDa)

9.25

Isoelectric Point (pI)

27.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM18 PF14770 39 - 156 1.2e-45 Transmembrane protein 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013482)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20390 AT2G20390
fragaria_vesca FvH4_2g20510
malus_domestica MD05G1188900.v1.1 MD10G1176500.v1.1
prunus_persica Prupe.8G215500_v2.0.a1
pyrus_communis pycom05g17350 pycom10g15240
rosa_chinensis RchiOBHm_Chr6g0286631
rosa_laevigata RLG00000012554
rosa_multiflora Rmu_sc0000560.1_g000005
rosa_roxburghii Rroxscaffold_7G00182140
rosa_rugosa Rorug06G0181600 Rorug06G0181700
rosa_samantha Rh6BG297500 Rh6CG297900 Rh6DG289800
rosa_wichuraiana Rw6G025330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 389
AccBSI CCGCTC 1 cut(s) 81
AciI CCGC 3 cut(s) 69, 79, 96
AcoI YGGCCR 1 cut(s) 313
AfaI GTAC 1 cut(s) 354
AgsI TTSAA 2 cut(s) 277, 333
AjnI CCWGG 3 cut(s) 33, 203, 285
AluBI AGCT 3 cut(s) 29, 446, 451
AluI AGCT 3 cut(s) 29, 446, 451
Alw21I GWGCWC 1 cut(s) 466
Alw26I GTCTC 1 cut(s) 448
Alw44I GTGCAC 1 cut(s) 462
AoxI GGCC 3 cut(s) 243, 313, 365
ApaLI GTGCAC 1 cut(s) 462
Asp700I GAANNNNTTC 1 cut(s) 305
AspS9I GGNCC 3 cut(s) 37, 92, 365
AsuHPI GGTGA 2 cut(s) 23, 413
AvaII GGWCC 2 cut(s) 37, 92
BaeGI GKGCMC 1 cut(s) 466
Bbv12I GWGCWC 1 cut(s) 466
BccI CCATC 1 cut(s) 148
BceAI ACGGC 2 cut(s) 258, 482
BciT130I CCWGG 3 cut(s) 35, 205, 287
BcoDI GTCTC 1 cut(s) 448
BglII AGATCT 1 cut(s) 49
BlpI GCTNAGC 1 cut(s) 447
BmcAI AGTACT 1 cut(s) 354
Bme1390I CCNGG 3 cut(s) 35, 205, 287
Bme18I GGWCC 2 cut(s) 37, 92
BmgT120I GGNCC 3 cut(s) 37, 92, 365
BmiI GGNNCC 2 cut(s) 94, 144
BmrFI CCNGG 3 cut(s) 35, 205, 287
BpmI CTGGAG 2 cut(s) 187, 273
Bpu1102I GCTNAGC 1 cut(s) 447
BsaJI CCNNGG 3 cut(s) 146, 246, 286
Bse118I RCCGGY 1 cut(s) 311
Bse1I ACTGG 2 cut(s) 140, 302
BseBI CCWGG 3 cut(s) 35, 205, 287
BseDI CCNNGG 3 cut(s) 146, 246, 286
BseMII CTCAG 4 cut(s) 258, 438, 443, 488
BseNI ACTGG 2 cut(s) 140, 302
BseSI GKGCMC 1 cut(s) 466
BshFI GGCC 3 cut(s) 245, 315, 367
BsiHKAI GWGCWC 1 cut(s) 466
BsiSI CCGG 1 cut(s) 312
BslFI GGGAC 1 cut(s) 180
BsmAI GTCTC 1 cut(s) 448
BsmFI GGGAC 1 cut(s) 180
BsnI GGCC 3 cut(s) 245, 315, 367
Bsp1286I GDGCHC 1 cut(s) 466
Bsp143I GATC 1 cut(s) 49
Bsp1720I GCTNAGC 1 cut(s) 447
Bsp19I CCATGG 1 cut(s) 146
BspACI CCGC 3 cut(s) 69, 79, 96
BspANI GGCC 3 cut(s) 245, 315, 367
BspCNI CTCAG 4 cut(s) 259, 439, 444, 487
BspLI GGNNCC 2 cut(s) 94, 144
BsrBI CCGCTC 1 cut(s) 81
BsrFI RCCGGY 1 cut(s) 311
BsrI ACTGG 2 cut(s) 140, 302
BssAI RCCGGY 1 cut(s) 311
BssECI CCNNGG 3 cut(s) 146, 246, 286
BssMI GATC 1 cut(s) 49
BssT1I CCWWGG 2 cut(s) 146, 246
Bst2UI CCWGG 3 cut(s) 35, 205, 287
Bst4CI ACNGT 1 cut(s) 461
Bst6I CTCTTC 2 cut(s) 296, 375
BstC8I GCNNGC 1 cut(s) 313
BstDEI CTNAG 4 cut(s) 267, 447, 452, 474
BstDSI CCRYGG 1 cut(s) 146
BstKTI GATC 1 cut(s) 52
BstMAI GTCTC 1 cut(s) 448
BstMBI GATC 1 cut(s) 49
BstNI CCWGG 3 cut(s) 35, 205, 287
BstSCI CCNGG 3 cut(s) 33, 203, 285
BstSLI GKGCMC 1 cut(s) 466
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
BsuRI GGCC 3 cut(s) 245, 315, 367
BtgI CCRYGG 1 cut(s) 146
Cac8I GCNNGC 1 cut(s) 313
Cfr10I RCCGGY 1 cut(s) 311
Cfr13I GGNCC 3 cut(s) 37, 92, 365
Csp6I GTAC 1 cut(s) 353
CviAII CATG 2 cut(s) 22, 147
CviJI RGCY 8 cut(s) 29, 245, 251, 315, 367, 446, 451, 469
CviKI_1 RGCY 8 cut(s) 29, 245, 251, 315, 367, 446, 451, 469
CviQI GTAC 1 cut(s) 353
DdeI CTNAG 4 cut(s) 267, 447, 452, 474
DpnI GATC 1 cut(s) 51
DpnII GATC 1 cut(s) 49
EaeI YGGCCR 1 cut(s) 313
Eam1104I CTCTTC 2 cut(s) 296, 375
EarI CTCTTC 2 cut(s) 296, 375
Eco130I CCWWGG 2 cut(s) 146, 246
Eco47I GGWCC 2 cut(s) 37, 92
EcoRII CCWGG 3 cut(s) 33, 203, 285
EcoT14I CCWWGG 2 cut(s) 146, 246
ErhI CCWWGG 2 cut(s) 146, 246
FaeI CATG 2 cut(s) 25, 150
FaiI YATR 4 cut(s) 23, 148, 389, 418
FaqI GGGAC 1 cut(s) 180
FatI CATG 2 cut(s) 21, 146
FauI CCCGC 1 cut(s) 103
GsuI CTGGAG 2 cut(s) 187, 273
HaeIII GGCC 3 cut(s) 245, 315, 367
HapII CCGG 1 cut(s) 312
Hin1II CATG 2 cut(s) 25, 150
HinfI GANTC 4 cut(s) 10, 168, 211, 329
HpaII CCGG 1 cut(s) 312
HphI GGTGA 2 cut(s) 23, 413
Hpy166II GTNNAC 1 cut(s) 464
Hpy188I TCNGA 2 cut(s) 294, 477
Hpy188III TCNNGA 1 cut(s) 58
Hpy8I GTNNAC 1 cut(s) 464
HpyAV CCTTC 1 cut(s) 133
HpyCH4III ACNGT 1 cut(s) 461
HpyCH4V TGCA 2 cut(s) 383, 464
HpyF3I CTNAG 4 cut(s) 267, 447, 452, 474
Hsp92II CATG 2 cut(s) 25, 150
KroI GCCGGC 1 cut(s) 311
KroNI GCCGGC 1 cut(s) 313
Kzo9I GATC 1 cut(s) 49
LmnI GCTCC 1 cut(s) 4
MaeIII GTNAC 1 cut(s) 419
MalI GATC 1 cut(s) 51
MbiI CCGCTC 1 cut(s) 81
MboI GATC 1 cut(s) 49
MboII GAAGA 3 cut(s) 220, 313, 362
MflI RGATCY 1 cut(s) 49
MhlI GDGCHC 1 cut(s) 466
MluCI AATT 4 cut(s) 319, 378, 384, 390
MlyI GAGTC 1 cut(s) 162
MnlI CCTC 2 cut(s) 264, 378
MroNI GCCGGC 1 cut(s) 311
MroXI GAANNNNTTC 1 cut(s) 305
MseI TTAA 1 cut(s) 216
MspI CCGG 1 cut(s) 312
MspR9I CCNGG 3 cut(s) 35, 205, 287
MvaI CCWGG 3 cut(s) 35, 205, 287
NaeI GCCGGC 1 cut(s) 313
NcoI CCATGG 1 cut(s) 146
NdeII GATC 1 cut(s) 49
NgoMIV GCCGGC 1 cut(s) 311
NlaIII CATG 2 cut(s) 25, 150
NlaIV GGNNCC 2 cut(s) 94, 144
NmuCI GTSAC 1 cut(s) 419
PdiI GCCGGC 1 cut(s) 313
PdmI GAANNNNTTC 1 cut(s) 305
PfeI GAWTC 3 cut(s) 10, 211, 329
PfoI TCCNGGA 1 cut(s) 203
PleI GAGTC 1 cut(s) 162
PpsI GAGTC 1 cut(s) 162
PsiI TTATAA 1 cut(s) 389
Psp6I CCWGG 3 cut(s) 33, 203, 285
PspGI CCWGG 3 cut(s) 33, 203, 285
PspN4I GGNNCC 2 cut(s) 94, 144
PspPI GGNCC 3 cut(s) 37, 92, 365
PsuI RGATCY 1 cut(s) 49
RsaI GTAC 1 cut(s) 354
RsaNI GTAC 1 cut(s) 353
SaqAI TTAA 1 cut(s) 216
Sau3AI GATC 1 cut(s) 49
Sau96I GGNCC 3 cut(s) 37, 92, 365
ScaI AGTACT 1 cut(s) 354
SchI GAGTC 1 cut(s) 162
ScrFI CCNGG 3 cut(s) 35, 205, 287
SduI GDGCHC 1 cut(s) 466
SetI ASST 6 cut(s) 31, 36, 275, 426, 448, 453
SinI GGWCC 2 cut(s) 37, 92
Sse9I AATT 4 cut(s) 319, 378, 384, 390
SsiI CCGC 3 cut(s) 69, 79, 96
StyD4I CCNGG 3 cut(s) 33, 203, 285
StyI CCWWGG 2 cut(s) 146, 246
TaaI ACNGT 1 cut(s) 461
TaqI TCGA 1 cut(s) 132
TasI AATT 4 cut(s) 319, 378, 384, 390
TatI WGTACW 1 cut(s) 352
TfiI GAWTC 3 cut(s) 10, 211, 329
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TseFI GTSAC 1 cut(s) 419
Tsp45I GTSAC 1 cut(s) 419
TspDTI ATGAA 1 cut(s) 100
VneI GTGCAC 1 cut(s) 462
VpaK11BI GGWCC 2 cut(s) 37, 92
XmnI GAANNNNTTC 1 cut(s) 305
ZrmI AGTACT 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.