Rh6CG297900

Cytochrome oxidase complex assembly protein 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0013482
Physical Location & Seq
Reverse (-)
47888861 .. 47891849
2989 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG297900.1

Sequence Viewer

Length: 585 bp
ATGCTGGCAAGGAGGGCCGTCTCGTTCTTGAAGAGCTCCTCAGCTCCACACTTTTCCAGTGTGGCTGCTTCGGCGAAAACTGTGGATGAAGGGAAGACCAAATGGTTTGGTCGCAAGGCTGTGAATTATCTTTTGATTACTGTTACCGGCGGCGTTGCTTTGAGTGCTCTTGATGATCTTATTATTTATCAGAGCTGTAGCAGCAAGGCCATGGAGAAAGCCAGTAAGGACCCAGCCATTCGAGATGCTCTAGGGGAACCTGTTTTGAAGGGCCCATGGTACAATGCACAGCTTGGAGTAGCTCATAAGAGGCAATCTGTATCTTGCAAATTTCCTGTGTATGGACCAAAAGGCACAGGAGTTCTCAGCGTGAAGGCTGTACGTGATGGAGATGATTCCTGGATTTCATATCTCATACCTCGCAATTGGGATATCTTAATCATGGATGCTCTCCTCCATATTCCTGAAAATGAAGAGAAGCAGCAAACAATACGGATTACCATCCCAGCGCCTGCTTGCACGGCTTCAGCATGCACCGGCCCTAGTTGCAGCACTCAAGAATCTCAGAATCCAGAGAAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Coa1

Protein Analysis

194

Amino Acids

20.97

Weight (kDa)

9.08

Isoelectric Point (pI)

52.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Coa1 PF08695 46 - 132 8.9e-06 Cytochrome oxidase complex assembly protein 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013482)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20390 AT2G20390
fragaria_vesca FvH4_2g20510
malus_domestica MD05G1188900.v1.1 MD10G1176500.v1.1
prunus_persica Prupe.8G215500_v2.0.a1
pyrus_communis pycom05g17350 pycom10g15240
rosa_chinensis RchiOBHm_Chr6g0286631
rosa_laevigata RLG00000012554
rosa_multiflora Rmu_sc0000560.1_g000005
rosa_roxburghii Rroxscaffold_7G00182140
rosa_rugosa Rorug06G0181600 Rorug06G0181700
rosa_samantha Rh6BG297500 Rh6CG297900 Rh6DG289800
rosa_wichuraiana Rw6G025330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 150
AcsI RAATTY 1 cut(s) 329
AcuI CTGAAG 1 cut(s) 510
AfaI GTAC 2 cut(s) 281, 381
AfiI CCNNNNNNNGG 1 cut(s) 341
AgsI TTSAA 2 cut(s) 31, 268
AjnI CCWGG 1 cut(s) 398
AluBI AGCT 5 cut(s) 36, 44, 195, 292, 302
AluI AGCT 5 cut(s) 36, 44, 195, 292, 302
Alw21I GWGCWC 2 cut(s) 38, 169
Alw26I GTCTC 1 cut(s) 25
AlwNI CAGNNNCTG 1 cut(s) 512
AoxI GGCC 4 cut(s) 15, 207, 271, 538
ApaI GGGCCC 1 cut(s) 275
ApeKI GCWGC 4 cut(s) 65, 201, 481, 549
ApoI RAATTY 1 cut(s) 329
AspLEI GCGC 1 cut(s) 511
AspS9I GGNCC 6 cut(s) 15, 229, 271, 272, 344, 539
AvaII GGWCC 2 cut(s) 229, 344
BaeGI GKGCMC 1 cut(s) 275
BanII GRGCYC 2 cut(s) 38, 275
BbsI GAAGAC 1 cut(s) 101
Bbv12I GWGCWC 2 cut(s) 38, 169
BbvCI CCTCAGC 1 cut(s) 40
BbvI GCAGC 4 cut(s) 52, 213, 493, 561
BccI CCATC 2 cut(s) 380, 509
BceAI ACGGC 2 cut(s) 2, 537
BciT130I CCWGG 1 cut(s) 400
BcoDI GTCTC 1 cut(s) 25
BfaI CTAG 2 cut(s) 251, 543
BfmI CTRYAG 1 cut(s) 196
BfoI RGCGCY 1 cut(s) 512
BisI GCNGC 5 cut(s) 66, 151, 202, 482, 550
BlsI GCNGC 5 cut(s) 67, 152, 203, 483, 551
Bme1390I CCNGG 1 cut(s) 400
Bme18I GGWCC 2 cut(s) 229, 344
BmgT120I GGNCC 6 cut(s) 15, 229, 271, 272, 344, 539
BmiI GGNNCC 3 cut(s) 231, 258, 273
BmrFI CCNGG 1 cut(s) 400
BmsI GCATC 2 cut(s) 235, 436
BpiI GAAGAC 1 cut(s) 101
Bpu10I CCTNAGC 1 cut(s) 40
BpuEI CTTGAG 1 cut(s) 540
BsaAI YACGTR 1 cut(s) 383
BsaBI GATNNNNATC 1 cut(s) 500
BsaJI CCNNGG 2 cut(s) 210, 275
Bsc4I CCNNNNNNNGG 1 cut(s) 341
Bse118I RCCGGY 2 cut(s) 146, 536
Bse1I ACTGG 2 cut(s) 57, 222
Bse8I GATNNNNATC 1 cut(s) 500
BseBI CCWGG 1 cut(s) 400
BseDI CCNNGG 2 cut(s) 210, 275
BseGI GGATG 3 cut(s) 91, 451, 501
BseJI GATNNNNATC 1 cut(s) 500
BseLI CCNNNNNNNGG 1 cut(s) 341
BseMII CTCAG 3 cut(s) 54, 379, 578
BseNI ACTGG 2 cut(s) 57, 222
BseRI GAGGAG 2 cut(s) 28, 443
BseSI GKGCMC 1 cut(s) 275
BseXI GCAGC 4 cut(s) 52, 213, 493, 561
BseYI CCCAGC 2 cut(s) 232, 505
BshFI GGCC 4 cut(s) 17, 209, 273, 540
BsiHKAI GWGCWC 2 cut(s) 38, 169
BsiSI CCGG 2 cut(s) 147, 537
BslI CCNNNNNNNGG 1 cut(s) 341
BsmAI GTCTC 1 cut(s) 25
BsmBI CGTCTC 1 cut(s) 25
BsnI GGCC 4 cut(s) 17, 209, 273, 540
Bsp120I GGGCCC 1 cut(s) 271
Bsp1286I GDGCHC 3 cut(s) 38, 169, 275
Bsp143I GATC 1 cut(s) 175
Bsp19I CCATGG 2 cut(s) 210, 275
BspACI CCGC 1 cut(s) 150
BspANI GGCC 4 cut(s) 17, 209, 273, 540
BspCNI CTCAG 3 cut(s) 53, 378, 577
BspLI GGNNCC 3 cut(s) 231, 258, 273
BspQI GCTCTTC 1 cut(s) 26
BsrFI RCCGGY 2 cut(s) 146, 536
BsrI ACTGG 2 cut(s) 57, 222
BssAI RCCGGY 2 cut(s) 146, 536
BssECI CCNNGG 2 cut(s) 210, 275
BssMI GATC 1 cut(s) 175
BssT1I CCWWGG 2 cut(s) 210, 275
Bst2UI CCWGG 1 cut(s) 400
Bst4CI ACNGT 2 cut(s) 82, 142
Bst6I CTCTTC 2 cut(s) 26, 468
BstBAI YACGTR 1 cut(s) 383
BstC8I GCNNGC 4 cut(s) 6, 513, 517, 532
BstDEI CTNAG 3 cut(s) 40, 365, 564
BstDSI CCRYGG 2 cut(s) 210, 275
BstF5I GGATG 3 cut(s) 91, 451, 501
BstH2I RGCGCY 1 cut(s) 512
BstHHI GCGC 1 cut(s) 511
BstKTI GATC 1 cut(s) 178
BstMAI GTCTC 1 cut(s) 25
BstMBI GATC 1 cut(s) 175
BstMWI GCNNNNNNNGC 6 cut(s) 14, 71, 164, 201, 521, 546
BstNI CCWGG 1 cut(s) 400
BstNSI RCATGY 1 cut(s) 534
BstSCI CCNGG 1 cut(s) 398
BstSFI CTRYAG 1 cut(s) 196
BstSLI GKGCMC 1 cut(s) 275
BstV1I GCAGC 4 cut(s) 52, 213, 493, 561
BstV2I GAAGAC 1 cut(s) 101
BsuRI GGCC 4 cut(s) 17, 209, 273, 540
BtgI CCRYGG 2 cut(s) 210, 275
BtsCI GGATG 3 cut(s) 91, 451, 501
BtsIMutI CAGTG 1 cut(s) 64
Cac8I GCNNGC 4 cut(s) 6, 513, 517, 532
CaiI CAGNNNCTG 1 cut(s) 512
CfoI GCGC 1 cut(s) 511
Cfr10I RCCGGY 2 cut(s) 146, 536
Cfr13I GGNCC 6 cut(s) 15, 229, 271, 272, 344, 539
Csp6I GTAC 2 cut(s) 280, 380
CviAII CATG 4 cut(s) 211, 276, 442, 531
CviQI GTAC 2 cut(s) 280, 380
DdeI CTNAG 3 cut(s) 40, 365, 564
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
Eam1104I CTCTTC 2 cut(s) 26, 468
EarI CTCTTC 2 cut(s) 26, 468
Ecl136II GAGCTC 1 cut(s) 36
Eco130I CCWWGG 2 cut(s) 210, 275
Eco24I GRGCYC 2 cut(s) 38, 275
Eco32I GATATC 1 cut(s) 433
Eco47I GGWCC 2 cut(s) 229, 344
Eco53kI GAGCTC 1 cut(s) 36
Eco57I CTGAAG 1 cut(s) 510
EcoICRI GAGCTC 1 cut(s) 36
EcoO109I RGGNCCY 2 cut(s) 229, 271
EcoRII CCWGG 1 cut(s) 398
EcoRV GATATC 1 cut(s) 433
EcoT14I CCWWGG 2 cut(s) 210, 275
EcoT38I GRGCYC 2 cut(s) 38, 275
ErhI CCWWGG 2 cut(s) 210, 275
Esp3I CGTCTC 1 cut(s) 25
FaeI CATG 4 cut(s) 214, 279, 445, 534
FaiI YATR 9 cut(s) 212, 277, 306, 342, 409, 416, 443, 459, 532
FatI CATG 4 cut(s) 210, 275, 441, 530
Fnu4HI GCNGC 5 cut(s) 66, 151, 202, 482, 550
FokI GGATG 3 cut(s) 98, 458, 488
FriOI GRGCYC 2 cut(s) 38, 275
Fsp4HI GCNGC 5 cut(s) 66, 151, 202, 482, 550
FspBI CTAG 2 cut(s) 251, 543
GlaI GCGC 1 cut(s) 510
GluI GCNGC 5 cut(s) 66, 151, 202, 482, 550
GsaI CCCAGC 2 cut(s) 236, 509
HaeII RGCGCY 1 cut(s) 512
HaeIII GGCC 4 cut(s) 17, 209, 273, 540
HapII CCGG 2 cut(s) 147, 537
HhaI GCGC 1 cut(s) 511
Hin1II CATG 4 cut(s) 214, 279, 445, 534
Hin6I GCGC 1 cut(s) 509
HinP1I GCGC 1 cut(s) 509
HinfI GANTC 3 cut(s) 395, 560, 568
HpaII CCGG 2 cut(s) 147, 537
Hpy188I TCNGA 2 cut(s) 192, 567
Hpy188III TCNNGA 6 cut(s) 28, 170, 242, 464, 557, 572
HpyAV CCTTC 3 cut(s) 83, 262, 367
HpyCH4III ACNGT 2 cut(s) 82, 142
HpyCH4IV ACGT 1 cut(s) 382
HpyCH4V TGCA 5 cut(s) 287, 327, 519, 534, 549
HpyF10VI GCNNNNNNNGC 6 cut(s) 14, 71, 164, 201, 521, 546
HpyF3I CTNAG 3 cut(s) 40, 365, 564
HpySE526I ACGT 1 cut(s) 382
Hsp92II CATG 4 cut(s) 214, 279, 445, 534
HspAI GCGC 1 cut(s) 509
Kzo9I GATC 1 cut(s) 175
LguI GCTCTTC 1 cut(s) 26
LmnI GCTCC 2 cut(s) 41, 49
Lsp1109I GCAGC 4 cut(s) 52, 213, 493, 561
LweI GCATC 2 cut(s) 235, 436
MaeI CTAG 2 cut(s) 251, 543
MaeII ACGT 1 cut(s) 382
MaeIII GTNAC 1 cut(s) 142
MalI GATC 1 cut(s) 177
MboI GATC 1 cut(s) 175
MboII GAAGA 3 cut(s) 43, 106, 485
MfeI CAATTG 1 cut(s) 424
MhlI GDGCHC 3 cut(s) 38, 169, 275
MluCI AATT 3 cut(s) 124, 329, 424
MnlI CCTC 5 cut(s) 6, 49, 303, 429, 464
MseI TTAA 1 cut(s) 437
MspI CCGG 2 cut(s) 147, 537
MspR9I CCNGG 1 cut(s) 400
MunI CAATTG 1 cut(s) 424
MvaI CCWGG 1 cut(s) 400
MwoI GCNNNNNNNGC 6 cut(s) 14, 71, 164, 201, 521, 546
NcoI CCATGG 2 cut(s) 210, 275
NdeII GATC 1 cut(s) 175
NlaIII CATG 4 cut(s) 214, 279, 445, 534
NlaIV GGNNCC 3 cut(s) 231, 258, 273
NspI RCATGY 1 cut(s) 534
PaeI GCATGC 1 cut(s) 534
PciSI GCTCTTC 1 cut(s) 26
PfeI GAWTC 3 cut(s) 395, 560, 568
PfoI TCCNGGA 1 cut(s) 398
PkrI GCNGC 5 cut(s) 67, 152, 203, 483, 551
Ppu21I YACGTR 1 cut(s) 383
PpuMI RGGWCCY 1 cut(s) 229
Psp124BI GAGCTC 1 cut(s) 38
Psp5II RGGWCCY 1 cut(s) 229
Psp6I CCWGG 1 cut(s) 398
PspFI CCCAGC 2 cut(s) 232, 505
PspGI CCWGG 1 cut(s) 398
PspN4I GGNNCC 3 cut(s) 231, 258, 273
PspOMI GGGCCC 1 cut(s) 271
PspPI GGNCC 6 cut(s) 15, 229, 271, 272, 344, 539
PspPPI RGGWCCY 1 cut(s) 229
PstNI CAGNNNCTG 1 cut(s) 512
RsaI GTAC 2 cut(s) 281, 381
RsaNI GTAC 2 cut(s) 280, 380
SacI GAGCTC 1 cut(s) 38
SapI GCTCTTC 1 cut(s) 26
SaqAI TTAA 1 cut(s) 437
SatI GCNGC 5 cut(s) 66, 151, 202, 482, 550
Sau3AI GATC 1 cut(s) 175
Sau96I GGNCC 6 cut(s) 15, 229, 271, 272, 344, 539
ScrFI CCNGG 1 cut(s) 400
SduI GDGCHC 3 cut(s) 38, 169, 275
SetI ASST 8 cut(s) 38, 46, 197, 262, 294, 304, 385, 421
SfaNI GCATC 2 cut(s) 235, 436
SfcI CTRYAG 1 cut(s) 196
SinI GGWCC 2 cut(s) 229, 344
SmlI CTYRAG 1 cut(s) 555
SmoI CTYRAG 1 cut(s) 555
SphI GCATGC 1 cut(s) 534
Sse9I AATT 3 cut(s) 124, 329, 424
SsiI CCGC 1 cut(s) 150
SspMI CTAG 2 cut(s) 251, 543
SstI GAGCTC 1 cut(s) 38
StyD4I CCNGG 1 cut(s) 398
StyI CCWWGG 2 cut(s) 210, 275
TaaI ACNGT 2 cut(s) 82, 142
TaiI ACGT 1 cut(s) 385
TaqI TCGA 1 cut(s) 241
TasI AATT 3 cut(s) 124, 329, 424
TauI GCSGC 1 cut(s) 153
TfiI GAWTC 3 cut(s) 395, 560, 568
Tru1I TTAA 1 cut(s) 437
Tru9I TTAA 1 cut(s) 437
TscAI CASTG 1 cut(s) 64
TseI GCWGC 4 cut(s) 65, 201, 481, 549
TspDTI ATGAA 3 cut(s) 102, 396, 486
TspGWI ACGGA 1 cut(s) 508
TspRI CASTG 1 cut(s) 64
VpaK11BI GGWCC 2 cut(s) 229, 344
XapI RAATTY 1 cut(s) 329
XceI RCATGY 1 cut(s) 534
XspI CTAG 2 cut(s) 251, 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.