MD05G1188900.v1.1

Cytochrome oxidase complex assembly protein 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0013482
Physical Location & Seq
Reverse (-)
31661769 .. 31666859
5091 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1188900.v1.1.491

Sequence Viewer

Length: 579 bp
ATGCTGTCGAGGAGGTTGGTTTCGTTCCTCAACAGGAGCTCCTCAGCGCCACACTTTTCCAGTTTGGCGGCGAAGACAGTGGACGAAGGGAAGAGCTCGTCTTTCGGGCGAAAGGCGGTGTCTTTTATTCTGATTACCACTACCGGCGGTGTTGCTTTAAGTGCTCTTAATGATCTTGTGATTTATCAAAGCTGCAGCAGCAAGGCCATGGAGAAAGCCAGTAAGAACCCAGCAATCATAGAGGCTATAGGGGAACCTATTGCCAAGGGCCCATGGTACAATGCTTCGCTTGCAGTAGCTCATAAGCGGCATTCTGTAGCTTGCACATTTCCTGTGTCTGGACCACGAGGCGCGGGAGTCTTGGAGGTGAAGGCTGTACGTAAAGGAGATAACACCTGGCTTTCGTATCTCATCCCTCGCGATTGGGACATCCTAATCATGGATGCCCTCGTCCATATTCCTGAAAACGAAGAGAAGCAGCGAACAGTGCGAATTGGTATTTCCGACAGTGCCCCCGGTCCTGCTTGTACGGCATGCACTGGTTGTCCCACTCAAGTATCGGCGAGTCCGAAGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Coa1

Protein Analysis

193

Amino Acids

20.4

Weight (kDa)

9.32

Isoelectric Point (pI)

56.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Coa1 PF08695 42 - 132 2.4e-07 Cytochrome oxidase complex assembly protein 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013482)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20390 AT2G20390
fragaria_vesca FvH4_2g20510
malus_domestica MD05G1188900.v1.1 MD10G1176500.v1.1
prunus_persica Prupe.8G215500_v2.0.a1
pyrus_communis pycom05g17350 pycom10g15240
rosa_chinensis RchiOBHm_Chr6g0286631
rosa_laevigata RLG00000012554
rosa_multiflora Rmu_sc0000560.1_g000005
rosa_roxburghii Rroxscaffold_7G00182140
rosa_rugosa Rorug06G0181600 Rorug06G0181700
rosa_samantha Rh6BG297500 Rh6CG297900 Rh6DG289800
rosa_wichuraiana Rw6G025330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 353, 420
AciI CCGC 5 cut(s) 68, 116, 147, 307, 353
AfaI GTAC 3 cut(s) 278, 378, 529
AfiI CCNNNNNNNGG 2 cut(s) 338, 439
AjnI CCWGG 1 cut(s) 395
AluBI AGCT 5 cut(s) 39, 96, 192, 299, 320
AluI AGCT 5 cut(s) 39, 96, 192, 299, 320
Alw21I GWGCWC 3 cut(s) 41, 98, 166
AoxI GGCC 2 cut(s) 204, 268
ApaI GGGCCC 1 cut(s) 272
ApeKI GCWGC 4 cut(s) 192, 195, 198, 478
AspLEI GCGC 2 cut(s) 49, 353
AspS9I GGNCC 4 cut(s) 268, 269, 341, 518
AsuC2I CCSGG 1 cut(s) 516
AsuHPI GGTGA 1 cut(s) 379
AvaII GGWCC 2 cut(s) 341, 518
BaeGI GKGCMC 2 cut(s) 272, 514
BaeI ACNNNNGTAYC 2 cut(s) 540, 573
BanII GRGCYC 3 cut(s) 41, 98, 272
BauI CACGAG 1 cut(s) 345
BbsI GAAGAC 1 cut(s) 80
Bbv12I GWGCWC 3 cut(s) 41, 98, 166
BbvCI CCTCAGC 1 cut(s) 43
BbvI GCAGC 4 cut(s) 179, 207, 210, 490
BceAI ACGGC 1 cut(s) 546
BciT130I CCWGG 1 cut(s) 397
BcnI CCSGG 1 cut(s) 516
BfmI CTRYAG 3 cut(s) 193, 246, 315
BfoI RGCGCY 1 cut(s) 50
BisI GCNGC 6 cut(s) 69, 193, 196, 199, 308, 479
BlsI GCNGC 6 cut(s) 70, 194, 197, 200, 309, 480
Bme1390I CCNGG 2 cut(s) 397, 516
Bme18I GGWCC 2 cut(s) 341, 518
BmgT120I GGNCC 4 cut(s) 268, 269, 341, 518
BmiI GGNNCC 2 cut(s) 255, 270
BmrFI CCNGG 2 cut(s) 397, 516
BmsI GCATC 1 cut(s) 433
BpiI GAAGAC 1 cut(s) 80
Bpu10I CCTNAGC 1 cut(s) 43
BpuEI CTTGAG 1 cut(s) 537
BpuMI CCSGG 1 cut(s) 516
BsaAI YACGTR 1 cut(s) 380
BsaJI CCNNGG 4 cut(s) 207, 264, 272, 514
BsaXI ACNNNNNCTCC 2 cut(s) 23, 53
Bsc4I CCNNNNNNNGG 2 cut(s) 338, 439
Bse118I RCCGGY 1 cut(s) 143
Bse1I ACTGG 3 cut(s) 60, 219, 544
BseBI CCWGG 1 cut(s) 397
BseDI CCNNGG 4 cut(s) 207, 264, 272, 514
BseGI GGATG 3 cut(s) 411, 429, 448
BseLI CCNNNNNNNGG 2 cut(s) 338, 439
BseMII CTCAG 1 cut(s) 57
BseNI ACTGG 3 cut(s) 60, 219, 544
BseRI GAGGAG 2 cut(s) 25, 31
BseSI GKGCMC 2 cut(s) 272, 514
BseXI GCAGC 4 cut(s) 179, 207, 210, 490
BseYI CCCAGC 1 cut(s) 229
Bsh1236I CGCG 2 cut(s) 353, 420
BshFI GGCC 2 cut(s) 206, 270
BsiHKAI GWGCWC 3 cut(s) 41, 98, 166
BsiSI CCGG 2 cut(s) 144, 516
BslFI GGGAC 2 cut(s) 440, 531
BslI CCNNNNNNNGG 2 cut(s) 338, 439
BsmFI GGGAC 2 cut(s) 440, 531
BsmI GAATGC 1 cut(s) 310
BsnI GGCC 2 cut(s) 206, 270
Bsp120I GGGCCC 1 cut(s) 268
Bsp1286I GDGCHC 5 cut(s) 41, 98, 166, 272, 514
Bsp143I GATC 1 cut(s) 172
Bsp19I CCATGG 2 cut(s) 207, 272
Bsp68I TCGCGA 1 cut(s) 420
BspACI CCGC 5 cut(s) 68, 116, 147, 307, 353
BspANI GGCC 2 cut(s) 206, 270
BspCNI CTCAG 1 cut(s) 56
BspFNI CGCG 2 cut(s) 353, 420
BspLI GGNNCC 2 cut(s) 255, 270
BspMAI CTGCAG 1 cut(s) 197
BspQI GCTCTTC 1 cut(s) 86
BsrFI RCCGGY 1 cut(s) 143
BsrI ACTGG 3 cut(s) 60, 219, 544
BssAI RCCGGY 1 cut(s) 143
BssECI CCNNGG 4 cut(s) 207, 264, 272, 514
BssMI GATC 1 cut(s) 172
BssSI CACGAG 1 cut(s) 345
BssT1I CCWWGG 3 cut(s) 207, 264, 272
Bst2BI CACGAG 1 cut(s) 345
Bst2UI CCWGG 1 cut(s) 397
Bst4CI ACNGT 3 cut(s) 79, 487, 509
Bst6I CTCTTC 2 cut(s) 86, 465
BstBAI YACGTR 1 cut(s) 380
BstC8I GCNNGC 3 cut(s) 291, 322, 535
BstDEI CTNAG 1 cut(s) 43
BstDSI CCRYGG 2 cut(s) 207, 272
BstF5I GGATG 3 cut(s) 411, 429, 448
BstFNI CGCG 2 cut(s) 353, 420
BstH2I RGCGCY 1 cut(s) 50
BstHHI GCGC 2 cut(s) 49, 353
BstKTI GATC 1 cut(s) 175
BstMBI GATC 1 cut(s) 172
BstMWI GCNNNNNNNGC 5 cut(s) 161, 198, 290, 487, 530
BstNI CCWGG 1 cut(s) 397
BstNSI RCATGY 1 cut(s) 537
BstSCI CCNGG 2 cut(s) 395, 514
BstSFI CTRYAG 3 cut(s) 193, 246, 315
BstSLI GKGCMC 2 cut(s) 272, 514
BstSNI TACGTA 1 cut(s) 380
BstUI CGCG 2 cut(s) 353, 420
BstV1I GCAGC 4 cut(s) 179, 207, 210, 490
BstV2I GAAGAC 1 cut(s) 80
BsuRI GGCC 2 cut(s) 206, 270
BtgI CCRYGG 2 cut(s) 207, 272
BtsCI GGATG 3 cut(s) 411, 429, 448
BtsIMutI CAGTG 4 cut(s) 84, 492, 514, 537
BtuMI TCGCGA 1 cut(s) 420
Cac8I GCNNGC 3 cut(s) 291, 322, 535
CfoI GCGC 2 cut(s) 49, 353
Cfr10I RCCGGY 1 cut(s) 143
Cfr13I GGNCC 4 cut(s) 268, 269, 341, 518
Csp6I GTAC 3 cut(s) 277, 377, 528
CviAII CATG 4 cut(s) 208, 273, 439, 534
CviQI GTAC 3 cut(s) 277, 377, 528
DdeI CTNAG 1 cut(s) 43
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
Eam1104I CTCTTC 2 cut(s) 86, 465
EarI CTCTTC 2 cut(s) 86, 465
Ecl136II GAGCTC 2 cut(s) 39, 96
Eco105I TACGTA 1 cut(s) 380
Eco130I CCWWGG 3 cut(s) 207, 264, 272
Eco24I GRGCYC 3 cut(s) 41, 98, 272
Eco47I GGWCC 2 cut(s) 341, 518
Eco53kI GAGCTC 2 cut(s) 39, 96
EcoICRI GAGCTC 2 cut(s) 39, 96
EcoO109I RGGNCCY 1 cut(s) 268
EcoRII CCWGG 1 cut(s) 395
EcoT14I CCWWGG 3 cut(s) 207, 264, 272
EcoT38I GRGCYC 3 cut(s) 41, 98, 272
ErhI CCWWGG 3 cut(s) 207, 264, 272
FaeI CATG 4 cut(s) 211, 276, 442, 537
FaiI YATR 8 cut(s) 209, 239, 248, 274, 303, 440, 456, 535
FaqI GGGAC 2 cut(s) 440, 531
FatI CATG 4 cut(s) 207, 272, 438, 533
FauI CCCGC 1 cut(s) 346
Fnu4HI GCNGC 6 cut(s) 69, 193, 196, 199, 308, 479
FokI GGATG 3 cut(s) 398, 416, 455
FriOI GRGCYC 3 cut(s) 41, 98, 272
Fsp4HI GCNGC 6 cut(s) 69, 193, 196, 199, 308, 479
GlaI GCGC 2 cut(s) 48, 352
GluI GCNGC 6 cut(s) 69, 193, 196, 199, 308, 479
GsaI CCCAGC 1 cut(s) 233
HaeII RGCGCY 1 cut(s) 50
HaeIII GGCC 2 cut(s) 206, 270
HapII CCGG 2 cut(s) 144, 516
HhaI GCGC 2 cut(s) 49, 353
Hin1II CATG 4 cut(s) 211, 276, 442, 537
Hin6I GCGC 2 cut(s) 47, 351
HinP1I GCGC 2 cut(s) 47, 351
HinfI GANTC 2 cut(s) 357, 565
HpaII CCGG 2 cut(s) 144, 516
HphI GGTGA 1 cut(s) 379
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 3 cut(s) 132, 505, 570
Hpy188III TCNNGA 3 cut(s) 339, 419, 461
Hpy8I GTNNAC 1 cut(s) 82
HpyAV CCTTC 2 cut(s) 80, 364
HpyCH4III ACNGT 3 cut(s) 79, 487, 509
HpyCH4IV ACGT 1 cut(s) 379
HpyCH4V TGCA 4 cut(s) 195, 293, 324, 537
HpyF10VI GCNNNNNNNGC 5 cut(s) 161, 198, 290, 487, 530
HpyF3I CTNAG 1 cut(s) 43
HpySE526I ACGT 1 cut(s) 379
Hsp92II CATG 4 cut(s) 211, 276, 442, 537
HspAI GCGC 2 cut(s) 47, 351
Kzo9I GATC 1 cut(s) 172
LguI GCTCTTC 1 cut(s) 86
LmnI GCTCC 2 cut(s) 36, 44
Lsp1109I GCAGC 4 cut(s) 179, 207, 210, 490
LweI GCATC 1 cut(s) 433
MaeII ACGT 1 cut(s) 379
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 3 cut(s) 85, 103, 482
MhlI GDGCHC 5 cut(s) 41, 98, 166, 272, 514
MluCI AATT 1 cut(s) 492
MlyI GAGTC 2 cut(s) 366, 574
MmeI TCCRAC 1 cut(s) 528
MnlI CCTC 9 cut(s) 3, 6, 38, 52, 235, 341, 358, 426, 458
MseI TTAA 2 cut(s) 158, 168
MspI CCGG 2 cut(s) 144, 516
MspR9I CCNGG 2 cut(s) 397, 516
Mva1269I GAATGC 1 cut(s) 310
MvaI CCWGG 1 cut(s) 397
MvnI CGCG 2 cut(s) 353, 420
MwoI GCNNNNNNNGC 5 cut(s) 161, 198, 290, 487, 530
NciI CCSGG 1 cut(s) 516
NcoI CCATGG 2 cut(s) 207, 272
NdeII GATC 1 cut(s) 172
NlaIII CATG 4 cut(s) 211, 276, 442, 537
NlaIV GGNNCC 2 cut(s) 255, 270
NruI TCGCGA 1 cut(s) 420
NspI RCATGY 1 cut(s) 537
PaeI GCATGC 1 cut(s) 537
PciSI GCTCTTC 1 cut(s) 86
PcsI WCGNNNNNNNCGW 1 cut(s) 566
PctI GAATGC 1 cut(s) 310
PkrI GCNGC 6 cut(s) 70, 194, 197, 200, 309, 480
PleI GAGTC 2 cut(s) 365, 573
PpsI GAGTC 2 cut(s) 365, 573
Ppu21I YACGTR 1 cut(s) 380
Psp124BI GAGCTC 2 cut(s) 41, 98
Psp6I CCWGG 1 cut(s) 395
PspFI CCCAGC 1 cut(s) 229
PspGI CCWGG 1 cut(s) 395
PspN4I GGNNCC 2 cut(s) 255, 270
PspOMI GGGCCC 1 cut(s) 268
PspPI GGNCC 4 cut(s) 268, 269, 341, 518
PstI CTGCAG 1 cut(s) 197
RruI TCGCGA 1 cut(s) 420
RsaI GTAC 3 cut(s) 278, 378, 529
RsaNI GTAC 3 cut(s) 277, 377, 528
SacI GAGCTC 2 cut(s) 41, 98
SapI GCTCTTC 1 cut(s) 86
SaqAI TTAA 2 cut(s) 158, 168
SatI GCNGC 6 cut(s) 69, 193, 196, 199, 308, 479
Sau3AI GATC 1 cut(s) 172
Sau96I GGNCC 4 cut(s) 268, 269, 341, 518
SchI GAGTC 2 cut(s) 366, 574
ScrFI CCNGG 2 cut(s) 397, 516
SduI GDGCHC 5 cut(s) 41, 98, 166, 272, 514
SfaNI GCATC 1 cut(s) 433
SfcI CTRYAG 3 cut(s) 193, 246, 315
SinI GGWCC 2 cut(s) 341, 518
SmlI CTYRAG 1 cut(s) 552
SmoI CTYRAG 1 cut(s) 552
SnaBI TACGTA 1 cut(s) 380
SphI GCATGC 1 cut(s) 537
Sse9I AATT 1 cut(s) 492
SsiI CCGC 5 cut(s) 68, 116, 147, 307, 353
SstI GAGCTC 2 cut(s) 41, 98
StyD4I CCNGG 2 cut(s) 395, 514
StyI CCWWGG 3 cut(s) 207, 264, 272
TaaI ACNGT 3 cut(s) 79, 487, 509
TaiI ACGT 1 cut(s) 382
TaqI TCGA 1 cut(s) 8
TasI AATT 1 cut(s) 492
TauI GCSGC 2 cut(s) 71, 310
Tru1I TTAA 2 cut(s) 158, 168
Tru9I TTAA 2 cut(s) 158, 168
TscAI CASTG 4 cut(s) 84, 492, 514, 544
TseI GCWGC 4 cut(s) 192, 195, 198, 478
TspRI CASTG 4 cut(s) 84, 492, 514, 544
VpaK11BI GGWCC 2 cut(s) 341, 518
XceI RCATGY 1 cut(s) 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.