Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009023

Physical Location & Seq

Genomic Coordinates Forward (+)

9020944 .. 9021870

Gene Structure 927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G21010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGGCATGATAAATCCATACGTGCAAATCGAGCTCTCTGAAGATAAAATTTCATCTAAGAAGACAACTGTTAAACACAAGAATTTGAACCCTGAATGGAATGAGGAATTCAAATTCTCGGTCAGAGATCCCAAGACTCAGGTTCTAGAATTCAATGTGTATGGCTGGGAAAAGATTGGGAAGCACGATAAGATGGGTATGAATGTATTAGCTTTGAAAGAATTGGCGCCTGATGAACGTAAAGCATTCACCTTGGAACTGCGTAAGACTCTGGACGGTGGTGAAGAAGGGCAGCCTGGCAAGTATAGGGGGAAGCTGGAGGTTGAACTCTTGTATAAGCCATTCACGGAGGAAGAAATGCAAGCGGTTCAGAAAGCTCCAGAAGGCACACCGGTTGCTGGAGGAATGCTTGTGGTAATAGTGCATTCGGCTGAGGATGTTGAAGGAAAGCATCATACCAATCCTTATGTGCACATCTACTTCAAAGGGGAGGAGAGAAAAACAAAGAATGTGAAGAAGAACAAAGACCCAAAGTGGAATGAGGAGTTCTCCTTTATGCTCGAGGAGCCTCCAGTCCATGAGAAATTGCACGTGGAAGTGTTTAGCACCTCTTCTAGGATAGGTCTATTGCATCCCAAGGAAACACTAGGGTACGTGGATATTCCGGTGGTGGACGTGGTGAACAACAAAAGGATGAATCAGAAGTTTCACCTTATTGATTCTAAGAATGGAAAGATCCAAATCGAGCTTGACTGGCAAACTGCCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0010008 GO:0012505 GO:0016020 GO:0031090 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 SMP_LBD

Protein Analysis

256

Amino Acids

29.54

Weight (kDa)

6.39

Isoelectric Point (pI)

31.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	2 - 85	1.1e-20	C2 domain
C2	PF00168	136 - 238	6.1e-17	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20990 AT2G20990 AT2G20990 AT2G21010
fragaria_vesca	FvH4_2g01300 FvH4_2g01300
malus_domestica	MD05G1120700.v1.1
prunus_persica	Prupe.8G164600_v2.0.a1 Prupe.8G164600_v2.0.a1 Prupe.8G164600_v2.0.a1
pyrus_communis	pycom05g11460
rosa_chinensis	RchiOBHm_Chr6g0252191
rosa_laevigata	RLG00000015404
rosa_multiflora	Rmu_sc0002522.1_g000001
rosa_roxburghii	Rroxscaffold_7G00216260
rosa_rugosa	Rorug05G0505900.1
rosa_samantha	Rh6AG019800 Rh6BG015200 Rh6CG012200 Rh6DG013500
rosa_wichuraiana	Rw6G000080 Rw6G001620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	226
AciI	CCGC	1 cut(s)	365
AclWI	GGATC	2 cut(s)	122, 730
AcsI	RAATTY	5 cut(s)	48, 82, 107, 113, 149
AcuI	CTGAAG	1 cut(s)	60
AcvI	CACGTG	1 cut(s)	592
AcyI	GRCGYC	1 cut(s)	227
AfaI	GTAC	1 cut(s)	653
AfiI	CCNNNNNNNGG	2 cut(s)	398, 615
AgeI	ACCGGT	1 cut(s)	391
AgsI	TTSAA	7 cut(s)	88, 112, 154, 217, 326, 443, 484
AjiI	CACGTC	1 cut(s)	676
AjnI	CCWGG	1 cut(s)	295
AluBI	AGCT	5 cut(s)	34, 212, 316, 377, 748
AluI	AGCT	5 cut(s)	34, 212, 316, 377, 748
Alw21I	GWGCWC	2 cut(s)	36, 474
Alw44I	GTGCAC	1 cut(s)	470
AlwI	GGATC	2 cut(s)	122, 730
Ama87I	CYCGRG	1 cut(s)	560
ApaLI	GTGCAC	1 cut(s)	470
ApeKI	GCWGC	1 cut(s)	292
ApoI	RAATTY	5 cut(s)	48, 82, 107, 113, 149
ArsI	GACNNNNNNTTYG	2 cut(s)	105, 137
AsiGI	ACCGGT	1 cut(s)	391
AspLEI	GCGC	1 cut(s)	229
AsuHPI	GGTGA	4 cut(s)	241, 293, 691, 701
AvaI	CYCGRG	1 cut(s)	560
BaeGI	GKGCMC	1 cut(s)	474
BanI	GGYRCC	1 cut(s)	226
BanII	GRGCYC	1 cut(s)	36
BbrPI	CACGTG	1 cut(s)	592
BbsI	GAAGAC	1 cut(s)	68
Bbv12I	GWGCWC	2 cut(s)	36, 474
BbvCI	CCTCAGC	1 cut(s)	432
BbvI	GCAGC	1 cut(s)	304
BccI	CCATC	1 cut(s)	187
BciT130I	CCWGG	1 cut(s)	297
BfaI	CTAG	3 cut(s)	146, 615, 647
BfoI	RGCGCY	1 cut(s)	230
BisI	GCNGC	1 cut(s)	293
BlsI	GCNGC	1 cut(s)	294
Bme1390I	CCNGG	1 cut(s)	297
BmeT110I	CYCGRG	1 cut(s)	560
BmgBI	CACGTC	1 cut(s)	676
BmiI	GGNNCC	2 cut(s)	228, 567
BmrFI	CCNGG	1 cut(s)	297
BmsI	GCATC	2 cut(s)	460, 640
BpiI	GAAGAC	1 cut(s)	68
BplI	GAGNNNNNCTC	2 cut(s)	533, 565
BpmI	CTGGAG	4 cut(s)	338, 363, 420, 555
Bpu10I	CCTNAGC	1 cut(s)	432
BsaAI	YACGTR	3 cut(s)	22, 592, 655
BsaBI	GATNNNNATC	1 cut(s)	740
BsaHI	GRCGYC	1 cut(s)	227
BsaJI	CCNNGG	2 cut(s)	252, 636
BsaWI	WCCGGW	2 cut(s)	391, 664
Bsc4I	CCNNNNNNNGG	2 cut(s)	398, 615
Bse118I	RCCGGY	1 cut(s)	391
Bse1I	ACTGG	2 cut(s)	572, 758
Bse8I	GATNNNNATC	1 cut(s)	740
BseBI	CCWGG	1 cut(s)	297
BseDI	CCNNGG	2 cut(s)	252, 636
BseGI	GGATG	3 cut(s)	442, 631, 699
BseJI	GATNNNNATC	1 cut(s)	740
BseLI	CCNNNNNNNGG	2 cut(s)	398, 615
BseMII	CTCAG	2 cut(s)	152, 423
BseNI	ACTGG	2 cut(s)	572, 758
BseRI	GAGGAG	3 cut(s)	506, 557, 578
BseSI	GKGCMC	1 cut(s)	474
BseXI	GCAGC	1 cut(s)	304
BseYI	CCCAGC	1 cut(s)	165
BshNI	GGYRCC	1 cut(s)	226
BshTI	ACCGGT	1 cut(s)	391
BsiHKAI	GWGCWC	2 cut(s)	36, 474
BsiHKCI	CYCGRG	1 cut(s)	560
BsiSI	CCGG	2 cut(s)	392, 665
BslI	CCNNNNNNNGG	2 cut(s)	398, 615
BsmI	GAATGC	3 cut(s)	245, 411, 424
BsoBI	CYCGRG	1 cut(s)	560
Bsp1286I	GDGCHC	2 cut(s)	36, 474
Bsp143I	GATC	2 cut(s)	127, 735
BspACI	CCGC	1 cut(s)	365
BspCNI	CTCAG	2 cut(s)	151, 424
BspLI	GGNNCC	2 cut(s)	228, 567
BspPI	GGATC	2 cut(s)	122, 730
BspT107I	GGYRCC	1 cut(s)	226
BsrFI	RCCGGY	1 cut(s)	391
BsrI	ACTGG	2 cut(s)	572, 758
BssAI	RCCGGY	1 cut(s)	391
BssECI	CCNNGG	2 cut(s)	252, 636
BssMI	GATC	2 cut(s)	127, 735
BssNI	GRCGYC	1 cut(s)	227
BssT1I	CCWWGG	2 cut(s)	252, 636
Bst2UI	CCWGG	1 cut(s)	297
Bst4CI	ACNGT	2 cut(s)	70, 278
Bst6I	CTCTTC	1 cut(s)	616
BstACI	GRCGYC	1 cut(s)	227
BstBAI	YACGTR	3 cut(s)	22, 592, 655
BstC8I	GCNNGC	1 cut(s)	363
BstDEI	CTNAG	4 cut(s)	57, 138, 432, 723
BstENI	CCTNNNNNAGG	1 cut(s)	613
BstF5I	GGATG	3 cut(s)	442, 631, 699
BstH2I	RGCGCY	1 cut(s)	230
BstHHI	GCGC	1 cut(s)	229
BstKTI	GATC	2 cut(s)	130, 738
BstMBI	GATC	2 cut(s)	127, 735
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 565, 754
BstNI	CCWGG	1 cut(s)	297
BstSCI	CCNGG	1 cut(s)	295
BstSLI	GKGCMC	1 cut(s)	474
BstV1I	GCAGC	1 cut(s)	304
BstV2I	GAAGAC	1 cut(s)	68
BstX2I	RGATCY	2 cut(s)	127, 735
BstYI	RGATCY	2 cut(s)	127, 735
BtrI	CACGTC	1 cut(s)	676
BtsCI	GGATG	3 cut(s)	442, 631, 699
Cac8I	GCNNGC	1 cut(s)	363
CfoI	GCGC	1 cut(s)	229
Cfr10I	RCCGGY	1 cut(s)	391
Csp6I	GTAC	1 cut(s)	652
CspAI	ACCGGT	1 cut(s)	391
CviAII	CATG	2 cut(s)	7, 578
CviQI	GTAC	1 cut(s)	652
DdeI	CTNAG	4 cut(s)	57, 138, 432, 723
DinI	GGCGCC	1 cut(s)	228
DpnI	GATC	2 cut(s)	129, 737
DpnII	GATC	2 cut(s)	127, 735
Eam1104I	CTCTTC	1 cut(s)	616
EarI	CTCTTC	1 cut(s)	616
Ecl136II	GAGCTC	1 cut(s)	34
Eco130I	CCWWGG	2 cut(s)	252, 636
Eco24I	GRGCYC	1 cut(s)	36
Eco53kI	GAGCTC	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	60
Eco72I	CACGTG	1 cut(s)	592
Eco88I	CYCGRG	1 cut(s)	560
EcoICRI	GAGCTC	1 cut(s)	34
EcoNI	CCTNNNNNAGG	1 cut(s)	613
EcoRI	GAATTC	2 cut(s)	107, 149
EcoRII	CCWGG	1 cut(s)	295
EcoT14I	CCWWGG	2 cut(s)	252, 636
EcoT38I	GRGCYC	1 cut(s)	36
EgeI	GGCGCC	1 cut(s)	228
EheI	GGCGCC	1 cut(s)	228
ErhI	CCWWGG	2 cut(s)	252, 636
FaeI	CATG	2 cut(s)	10, 581
FatI	CATG	2 cut(s)	6, 577
Fnu4HI	GCNGC	1 cut(s)	293
FokI	GGATG	3 cut(s)	449, 618, 706
FriOI	GRGCYC	1 cut(s)	36
Fsp4HI	GCNGC	1 cut(s)	293
FspBI	CTAG	3 cut(s)	146, 615, 647
GlaI	GCGC	1 cut(s)	228
GluI	GCNGC	1 cut(s)	293
GsaI	CCCAGC	1 cut(s)	169
GsuI	CTGGAG	4 cut(s)	338, 363, 420, 555
HaeII	RGCGCY	1 cut(s)	230
HapII	CCGG	2 cut(s)	392, 665
HhaI	GCGC	1 cut(s)	229
Hin1I	GRCGYC	1 cut(s)	227
Hin1II	CATG	2 cut(s)	10, 581
Hin6I	GCGC	1 cut(s)	227
HinP1I	GCGC	1 cut(s)	227
HinfI	GANTC	4 cut(s)	136, 268, 697, 719
HpaII	CCGG	2 cut(s)	392, 665
HphI	GGTGA	4 cut(s)	241, 293, 691, 701
Hpy166II	GTNNAC	3 cut(s)	472, 673, 682
Hpy188I	TCNGA	4 cut(s)	40, 125, 372, 702
Hpy188III	TCNNGA	3 cut(s)	146, 272, 380
Hpy8I	GTNNAC	3 cut(s)	472, 673, 682
HpyAV	CCTTC	3 cut(s)	281, 377, 437
HpyCH4III	ACNGT	2 cut(s)	70, 278
HpyCH4IV	ACGT	5 cut(s)	21, 238, 591, 654, 675
HpyCH4V	TGCA	6 cut(s)	25, 361, 424, 472, 589, 631
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 565, 754
HpyF3I	CTNAG	4 cut(s)	57, 138, 432, 723
HpySE526I	ACGT	5 cut(s)	21, 238, 591, 654, 675
Hsp92I	GRCGYC	1 cut(s)	227
Hsp92II	CATG	2 cut(s)	10, 581
HspAI	GCGC	1 cut(s)	227
KasI	GGCGCC	1 cut(s)	226
Kzo9I	GATC	2 cut(s)	127, 735
LmnI	GCTCC	2 cut(s)	382, 565
Lsp1109I	GCAGC	1 cut(s)	304
LweI	GCATC	2 cut(s)	460, 640
MaeI	CTAG	3 cut(s)	146, 615, 647
MaeII	ACGT	5 cut(s)	21, 238, 591, 654, 675
MalI	GATC	2 cut(s)	129, 737
MboI	GATC	2 cut(s)	127, 735
MboII	GAAGA	7 cut(s)	53, 73, 296, 365, 526, 529, 603
MflI	RGATCY	2 cut(s)	127, 735
MhlI	GDGCHC	2 cut(s)	36, 474
MluCI	AATT	7 cut(s)	48, 82, 107, 113, 149, 221, 584
Mly113I	GGCGCC	1 cut(s)	227
MlyI	GAGTC	2 cut(s)	130, 262
MseI	TTAA	1 cut(s)	72
MspI	CCGG	2 cut(s)	392, 665
MspR9I	CCNGG	1 cut(s)	297
Mva1269I	GAATGC	3 cut(s)	245, 411, 424
MvaI	CCWGG	1 cut(s)	297
MwoI	GCNNNNNNNGC	3 cut(s)	31, 565, 754
NarI	GGCGCC	1 cut(s)	227
NdeII	GATC	2 cut(s)	127, 735
NlaIII	CATG	2 cut(s)	10, 581
NlaIV	GGNNCC	2 cut(s)	228, 567
PaeR7I	CTCGAG	1 cut(s)	560
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PctI	GAATGC	3 cut(s)	245, 411, 424
PfeI	GAWTC	2 cut(s)	697, 719
PinAI	ACCGGT	1 cut(s)	391
PkrI	GCNGC	1 cut(s)	294
PleI	GAGTC	2 cut(s)	130, 262
PluTI	GGCGCC	1 cut(s)	230
PmaCI	CACGTG	1 cut(s)	592
PmlI	CACGTG	1 cut(s)	592
PpsI	GAGTC	2 cut(s)	130, 262
Ppu21I	YACGTR	3 cut(s)	22, 592, 655
Psp124BI	GAGCTC	1 cut(s)	36
Psp6I	CCWGG	1 cut(s)	295
PspCI	CACGTG	1 cut(s)	592
PspFI	CCCAGC	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	295
PspN4I	GGNNCC	2 cut(s)	228, 567
PspXI	VCTCGAGB	1 cut(s)	560
PsuI	RGATCY	2 cut(s)	127, 735
RsaI	GTAC	1 cut(s)	653
RsaNI	GTAC	1 cut(s)	652
SacI	GAGCTC	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	1 cut(s)	293
Sau3AI	GATC	2 cut(s)	127, 735
SchI	GAGTC	2 cut(s)	130, 262
ScrFI	CCNGG	1 cut(s)	297
SduI	GDGCHC	2 cut(s)	36, 474
SfaNI	GCATC	2 cut(s)	460, 640
SfoI	GGCGCC	1 cut(s)	228
Sfr274I	CTCGAG	1 cut(s)	560
SlaI	CTCGAG	1 cut(s)	560
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
Sse9I	AATT	7 cut(s)	48, 82, 107, 113, 149, 221, 584
SsiI	CCGC	1 cut(s)	365
SspDI	GGCGCC	1 cut(s)	226
SspMI	CTAG	3 cut(s)	146, 615, 647
SstI	GAGCTC	1 cut(s)	36
StyD4I	CCNGG	1 cut(s)	295
StyI	CCWWGG	2 cut(s)	252, 636
TaaI	ACNGT	2 cut(s)	70, 278
TaiI	ACGT	5 cut(s)	24, 241, 594, 657, 678
TaqI	TCGA	3 cut(s)	30, 561, 744
TaqII	GACCGA	1 cut(s)	109
TasI	AATT	7 cut(s)	48, 82, 107, 113, 149, 221, 584
TfiI	GAWTC	2 cut(s)	697, 719
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TseI	GCWGC	1 cut(s)	292
TspDTI	ATGAA	4 cut(s)	42, 215, 249, 710
TspGWI	ACGGA	1 cut(s)	362
VneI	GTGCAC	1 cut(s)	470
XagI	CCTNNNNNAGG	1 cut(s)	613
XapI	RAATTY	5 cut(s)	48, 82, 107, 113, 149
XbaI	TCTAGA	1 cut(s)	145
XhoI	CTCGAG	1 cut(s)	560
XspI	CTAG	3 cut(s)	146, 615, 647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.