Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0009023

Physical Location & Seq

Genomic Coordinates Forward (+)

2179735 .. 2186824

Gene Structure 7090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG019800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1458 bp

ATGCTTCCTGAGATACCTCTTTGGGTGAAGAATCCAGACTACGATCGCGTTGATTGGCTAAACAAATTTCTTGAGTATATGTGGCCTTATCTTGATAAGGCGATCTGCAAAACTGCTAAAGATATTGCAAAGCCCATTATTGCCGAGGAAATACCGAAGTACAAGATCGAGTCTGTTGAATTTGAGAAGCTGACTTTAGGTTCCTTACCACCAACTTTTCAAGGTATGAAGGTTTATGTAACTGATGAGAAGGAGCTGATTATGGAACCCTCAATTAAATGGGCTGCAAATCCTAATGTCCTTCTTGCTGTTAAAGCATATGGAATGACAGCAACTGTTCAGGCGGTTGATGTGCAAGTTTTTGCTGCACCACGTATTACTTTGAAGCCCTTGGTTCCAAGCTTTCCTTGTTTTGCCCAAATCAATGTGTCTCTCATGGACAGGCCTTATGTTGACTTTGGATTAAAGCTTATAGGCGTTGATCTTATGTCAATACCTGGCCTTTACAGATTTGTCCAGGAGCTTATCAAAGACCAGGTTGCTAACATGTATCTCTGGCCAAAAACTCTTGAAGTACCGATAATGGACCCAGCAAAAGCCTTTAACAGGCCTGTAGGACTTCTCCATGTGAAGGTTCTGAGGGCAATGAAGTTAAGAAAGAAAGATCTTCTTGGTGCTTCAGACCCTTATGTAAAACTAAAGCTCACAGAGAGCAATATGCCATCAAAGAAGACCACTGTTAAGCACAAGAACCTGAACCCTGAATGGAATGAGGAATTTAATATGGTTGTCAAAGACCCACAATCTCAGGCTTTAGAATTTTTAGTTTATGACTGGGATAAGGTGGGAAAACATGAGAAAATGGGTATCAATGTAATACCTTTGAAAGACCTCCCCCATAATGAGCCAAAAGTTTTGACTCTGGACCTCCTTAAAACTATGGACTTAAATGATCCTCAGAATGAGAAGAACCGTGGGCAGCTTGAGTTGGAATTGACTTATAAACCCTTTAAAGAGGAGGACATGCAAAAAGGGTATGAAGAAACACAGACATTAGAGAAGGCTCCTGAAGGAACGCCACCTGGTGGAGGTTTGCTTGTTGTCATAGTTCATGAAGGTCAAGATCTTGAAGGAAAGCACCATTGTAATCCATCTGTGCGACTTATTCTCAGAGGGGAGGAAAGAAGGACCAAGCACCTAAAGAAGAGTAGAGATCCAAGATGGGAAGAAGAGTTTAAATTTGTGCTTGAACAACCTCCCACTAACGACAAACTACATGTAGAGGTTGTCAGTACCTCATCAAAATTGGGCCTGCTGCATGGAAAGGAATCTCTGGGCTATGTCCAAATCAGTCTTTCTGACGTCATTTCCAACAGACGAATTAACCAGAAGTACCATCTCATAGACTCGAAGAATGGACAGGTCCAGCTAGAGCTGCAATGGAGAACTGCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 SMP_LBD

Protein Analysis

485

Amino Acids

55.68

Weight (kDa)

7.18

Isoelectric Point (pI)

33.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMP_LBD	PF17047	13 - 194	1.7e-19	Synaptotagmin-like mitochondrial-lipid-binding domain
C2	PF00168	206 - 305	6.5e-26	C2 domain
C2	PF00168	365 - 467	1.7e-14	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20990 AT2G20990 AT2G20990 AT2G21010
fragaria_vesca	FvH4_2g01300 FvH4_2g01300
malus_domestica	MD05G1120700.v1.1
prunus_persica	Prupe.8G164600_v2.0.a1 Prupe.8G164600_v2.0.a1 Prupe.8G164600_v2.0.a1
pyrus_communis	pycom05g11460
rosa_chinensis	RchiOBHm_Chr6g0252191
rosa_laevigata	RLG00000015404
rosa_multiflora	Rmu_sc0002522.1_g000001
rosa_roxburghii	Rroxscaffold_7G00216260
rosa_rugosa	Rorug05G0505900.1
rosa_samantha	Rh6AG019800 Rh6BG015200 Rh6CG012200 Rh6DG013500
rosa_wichuraiana	Rw6G000080 Rw6G001620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1002
AatII	GACGTC	1 cut(s)	1365
AccB7I	CCANNNNNTGG	1 cut(s)	1085
AccII	CGCG	1 cut(s)	48
AciI	CCGC	1 cut(s)	344
AclWI	GGATC	2 cut(s)	947, 1208
AcoI	YGGCCR	1 cut(s)	557
AcsI	RAATTY	5 cut(s)	65, 179, 776, 818, 1238
AcuI	CTGAAG	2 cut(s)	663, 1089
AcyI	GRCGYC	1 cut(s)	1362
AdeI	CACNNNGTG	1 cut(s)	1085
AfaI	GTAC	4 cut(s)	161, 576, 1294, 1394
AfiI	CCNNNNNNNGG	4 cut(s)	606, 631, 1085, 1088
AflIII	ACRYGT	2 cut(s)	546, 1276
AgsI	TTSAA	7 cut(s)	179, 221, 385, 572, 886, 1130, 1250
AjnI	CCWGG	4 cut(s)	496, 516, 534, 1081
AluBI	AGCT	9 cut(s)	190, 256, 402, 469, 523, 703, 982, 1429, 1435
AluI	AGCT	9 cut(s)	190, 256, 402, 469, 523, 703, 982, 1429, 1435
Alw26I	GTCTC	1 cut(s)	435
AlwI	GGATC	2 cut(s)	947, 1208
AlwNI	CAGNNNCTG	1 cut(s)	335
AoxI	GGCC	6 cut(s)	83, 443, 499, 557, 608, 1309
ApeKI	GCWGC	5 cut(s)	284, 365, 979, 1315, 1435
ApoI	RAATTY	5 cut(s)	65, 179, 776, 818, 1238
AspS9I	GGNCC	5 cut(s)	586, 925, 1188, 1309, 1423
AsuHPI	GGTGA	1 cut(s)	37
AvaII	GGWCC	4 cut(s)	586, 925, 1188, 1423
BalI	TGGCCA	1 cut(s)	559
BbsI	GAAGAC	1 cut(s)	737
BbvI	GCAGC	5 cut(s)	271, 352, 991, 1302, 1422
BccI	CCATC	4 cut(s)	730, 1159, 1215, 1404
BciT130I	CCWGG	4 cut(s)	498, 518, 536, 1083
BcoDI	GTCTC	1 cut(s)	435
BfaI	CTAG	1 cut(s)	1430
BfmI	CTRYAG	1 cut(s)	612
BglII	AGATCT	2 cut(s)	664, 1123
BisI	GCNGC	5 cut(s)	285, 366, 980, 1316, 1436
BlsI	GCNGC	5 cut(s)	286, 367, 981, 1317, 1437
Bme1390I	CCNGG	4 cut(s)	498, 518, 536, 1083
Bme18I	GGWCC	4 cut(s)	586, 925, 1188, 1423
BmgT120I	GGNCC	5 cut(s)	586, 925, 1188, 1309, 1423
BmiI	GGNNCC	5 cut(s)	202, 267, 396, 588, 1065
BmrFI	CCNGG	4 cut(s)	498, 518, 536, 1083
BmrI	ACTGGG	1 cut(s)	844
BmuI	ACTGGG	1 cut(s)	844
BpiI	GAAGAC	1 cut(s)	737
BpuEI	CTTGAG	2 cut(s)	92, 1004
BsaAI	YACGTR	1 cut(s)	374
BsaHI	GRCGYC	1 cut(s)	1362
BsaJI	CCNNGG	3 cut(s)	144, 390, 973
Bsc4I	CCNNNNNNNGG	4 cut(s)	606, 631, 1085, 1088
Bse1I	ACTGG	1 cut(s)	839
Bse3DI	GCAATG	2 cut(s)	651, 1445
BseBI	CCWGG	4 cut(s)	498, 518, 536, 1083
BseDI	CCNNGG	3 cut(s)	144, 390, 973
BseLI	CCNNNNNNNGG	4 cut(s)	606, 631, 1085, 1088
BseMI	GCAATG	2 cut(s)	651, 1445
BseMII	CTCAG	4 cut(s)	629, 821, 971, 1183
BseNI	ACTGG	1 cut(s)	839
BseRI	GAGGAG	1 cut(s)	1031
BseXI	GCAGC	5 cut(s)	271, 352, 991, 1302, 1422
BseYI	CCCAGC	1 cut(s)	589
BsgI	GTGCAG	1 cut(s)	351
Bsh1236I	CGCG	1 cut(s)	48
Bsh1285I	CGRYCG	1 cut(s)	46
BshFI	GGCC	6 cut(s)	85, 445, 501, 559, 610, 1311
BsiEI	CGRYCG	1 cut(s)	46
BslI	CCNNNNNNNGG	4 cut(s)	606, 631, 1085, 1088
BsmAI	GTCTC	1 cut(s)	435
BsnI	GGCC	6 cut(s)	85, 445, 501, 559, 610, 1311
Bsp143I	GATC	8 cut(s)	43, 102, 165, 481, 664, 952, 1123, 1213
BspACI	CCGC	1 cut(s)	344
BspANI	GGCC	6 cut(s)	85, 445, 501, 559, 610, 1311
BspCNI	CTCAG	4 cut(s)	630, 820, 970, 1182
BspFNI	CGCG	1 cut(s)	48
BspHI	TCATGA	1 cut(s)	1111
BspLI	GGNNCC	5 cut(s)	202, 267, 396, 588, 1065
BspPI	GGATC	2 cut(s)	947, 1208
BsrDI	GCAATG	2 cut(s)	651, 1445
BsrI	ACTGG	1 cut(s)	839
BssECI	CCNNGG	3 cut(s)	144, 390, 973
BssMI	GATC	8 cut(s)	43, 102, 165, 481, 664, 952, 1123, 1213
BssNI	GRCGYC	1 cut(s)	1362
BssT1I	CCWWGG	1 cut(s)	390
Bst2UI	CCWGG	4 cut(s)	498, 518, 536, 1083
Bst4CI	ACNGT	3 cut(s)	337, 739, 974
Bst6I	CTCTTC	2 cut(s)	1199, 1224
BstACI	GRCGYC	1 cut(s)	1362
BstBAI	YACGTR	1 cut(s)	374
BstC8I	GCNNGC	1 cut(s)	1313
BstDEI	CTNAG	5 cut(s)	9, 638, 807, 957, 1169
BstDSI	CCRYGG	1 cut(s)	973
BstENI	CCTNNNNNAGG	2 cut(s)	604, 1086
BstFNI	CGCG	1 cut(s)	48
BstKTI	GATC	8 cut(s)	46, 105, 168, 484, 667, 955, 1126, 1216
BstMAI	GTCTC	1 cut(s)	435
BstMBI	GATC	8 cut(s)	43, 102, 165, 481, 664, 952, 1123, 1213
BstMCI	CGRYCG	1 cut(s)	46
BstMWI	GCNNNNNNNGC	2 cut(s)	314, 1435
BstNI	CCWGG	4 cut(s)	498, 518, 536, 1083
BstNSI	RCATGY	3 cut(s)	550, 1027, 1280
BstSCI	CCNGG	4 cut(s)	496, 516, 534, 1081
BstSFI	CTRYAG	1 cut(s)	612
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	5 cut(s)	271, 352, 991, 1302, 1422
BstV2I	GAAGAC	1 cut(s)	737
BstX2I	RGATCY	3 cut(s)	664, 1123, 1213
BstYI	RGATCY	3 cut(s)	664, 1123, 1213
BsuRI	GGCC	6 cut(s)	85, 445, 501, 559, 610, 1311
BtgI	CCRYGG	1 cut(s)	973
BtsIMutI	CAGTG	1 cut(s)	735
Cac8I	GCNNGC	1 cut(s)	1313
CaiI	CAGNNNCTG	1 cut(s)	335
CciI	TCATGA	1 cut(s)	1111
Cfr13I	GGNCC	5 cut(s)	586, 925, 1188, 1309, 1423
CsiI	ACCWGGT	2 cut(s)	534, 1081
Csp6I	GTAC	4 cut(s)	160, 575, 1293, 1393
CviAII	CATG	8 cut(s)	436, 547, 626, 854, 1024, 1112, 1277, 1319
CviQI	GTAC	4 cut(s)	160, 575, 1293, 1393
DdeI	CTNAG	5 cut(s)	9, 638, 807, 957, 1169
DpnI	GATC	8 cut(s)	45, 104, 167, 483, 666, 954, 1125, 1215
DpnII	GATC	8 cut(s)	43, 102, 165, 481, 664, 952, 1123, 1213
DraI	TTTAAA	2 cut(s)	1012, 1237
DraIII	CACNNNGTG	1 cut(s)	1085
EaeI	YGGCCR	1 cut(s)	557
Eam1104I	CTCTTC	2 cut(s)	1199, 1224
EarI	CTCTTC	2 cut(s)	1199, 1224
Eco130I	CCWWGG	1 cut(s)	390
Eco147I	AGGCCT	2 cut(s)	445, 610
Eco47I	GGWCC	4 cut(s)	586, 925, 1188, 1423
Eco57I	CTGAAG	2 cut(s)	663, 1089
EcoNI	CCTNNNNNAGG	2 cut(s)	604, 1086
EcoRII	CCWGG	4 cut(s)	496, 516, 534, 1081
EcoT14I	CCWWGG	1 cut(s)	390
ErhI	CCWWGG	1 cut(s)	390
FaeI	CATG	8 cut(s)	439, 550, 629, 857, 1027, 1115, 1280, 1322
FalI	AAGNNNNNCTT	4 cut(s)	391, 423, 654, 686
FatI	CATG	8 cut(s)	435, 546, 625, 853, 1023, 1111, 1276, 1318
FauNDI	CATATG	1 cut(s)	319
Fnu4HI	GCNGC	5 cut(s)	285, 366, 980, 1316, 1436
Fsp4HI	GCNGC	5 cut(s)	285, 366, 980, 1316, 1436
FspBI	CTAG	1 cut(s)	1430
GluI	GCNGC	5 cut(s)	285, 366, 980, 1316, 1436
GsaI	CCCAGC	1 cut(s)	593
HaeIII	GGCC	6 cut(s)	85, 445, 501, 559, 610, 1311
Hin1I	GRCGYC	1 cut(s)	1362
Hin1II	CATG	8 cut(s)	439, 550, 629, 857, 1027, 1115, 1280, 1322
HincII	GTYRAC	1 cut(s)	454
HindII	GTYRAC	1 cut(s)	454
HindIII	AAGCTT	2 cut(s)	400, 467
HinfI	GANTC	5 cut(s)	31, 170, 919, 1328, 1406
HphI	GGTGA	1 cut(s)	37
Hpy166II	GTNNAC	1 cut(s)	454
Hpy188I	TCNGA	5 cut(s)	639, 682, 960, 1172, 1360
Hpy8I	GTNNAC	1 cut(s)	454
HpyAV	CCTTC	9 cut(s)	223, 244, 311, 625, 1054, 1064, 1109, 1124, 1179
HpyCH4III	ACNGT	3 cut(s)	337, 739, 974
HpyCH4IV	ACGT	2 cut(s)	373, 1362
HpyCH4V	TGCA	8 cut(s)	108, 128, 287, 355, 368, 1027, 1318, 1438
HpyF10VI	GCNNNNNNNGC	2 cut(s)	314, 1435
HpyF3I	CTNAG	5 cut(s)	9, 638, 807, 957, 1169
HpySE526I	ACGT	2 cut(s)	373, 1362
Hsp92I	GRCGYC	1 cut(s)	1362
Hsp92II	CATG	8 cut(s)	439, 550, 629, 857, 1027, 1115, 1280, 1322
Kzo9I	GATC	8 cut(s)	43, 102, 165, 481, 664, 952, 1123, 1213
LmnI	GCTCC	3 cut(s)	253, 520, 1069
Lsp1109I	GCAGC	5 cut(s)	271, 352, 991, 1302, 1422
MabI	ACCWGGT	2 cut(s)	534, 1081
MaeI	CTAG	1 cut(s)	1430
MaeII	ACGT	2 cut(s)	373, 1362
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	8 cut(s)	45, 104, 167, 483, 666, 954, 1125, 1215
MboI	GATC	8 cut(s)	43, 102, 165, 481, 664, 952, 1123, 1213
MboII	GAAGA	9 cut(s)	40, 659, 742, 979, 1052, 1216, 1238, 1241, 1423
MflI	RGATCY	3 cut(s)	664, 1123, 1213
MlsI	TGGCCA	1 cut(s)	559
MluCI	AATT	9 cut(s)	65, 179, 273, 776, 818, 992, 1238, 1304, 1380
MluNI	TGGCCA	1 cut(s)	559
MlyI	GAGTC	3 cut(s)	179, 913, 1400
MmeI	TCCRAC	2 cut(s)	969, 1395
Mox20I	TGGCCA	1 cut(s)	559
MscI	TGGCCA	1 cut(s)	559
Msp20I	TGGCCA	1 cut(s)	559
MspR9I	CCNGG	4 cut(s)	498, 518, 536, 1083
MvaI	CCWGG	4 cut(s)	498, 518, 536, 1083
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	2 cut(s)	314, 1435
NdeI	CATATG	1 cut(s)	319
NdeII	GATC	8 cut(s)	43, 102, 165, 481, 664, 952, 1123, 1213
NlaIII	CATG	8 cut(s)	439, 550, 629, 857, 1027, 1115, 1280, 1322
NlaIV	GGNNCC	5 cut(s)	202, 267, 396, 588, 1065
NmeAIII	GCCGAG	1 cut(s)	169
NspI	RCATGY	3 cut(s)	550, 1027, 1280
PagI	TCATGA	1 cut(s)	1111
PceI	AGGCCT	2 cut(s)	445, 610
PciI	ACATGT	2 cut(s)	546, 1276
PfeI	GAWTC	2 cut(s)	31, 1328
PflMI	CCANNNNNTGG	1 cut(s)	1085
PfoI	TCCNGGA	1 cut(s)	516
PkrI	GCNGC	5 cut(s)	286, 367, 981, 1317, 1437
Ple19I	CGATCG	1 cut(s)	46
PleI	GAGTC	3 cut(s)	178, 913, 1400
PpsI	GAGTC	3 cut(s)	178, 913, 1400
Ppu21I	YACGTR	1 cut(s)	374
PscI	ACATGT	2 cut(s)	546, 1276
PsiI	TTATAA	1 cut(s)	1002
Psp6I	CCWGG	4 cut(s)	496, 516, 534, 1081
PspFI	CCCAGC	1 cut(s)	589
PspGI	CCWGG	4 cut(s)	496, 516, 534, 1081
PspN4I	GGNNCC	5 cut(s)	202, 267, 396, 588, 1065
PspPI	GGNCC	5 cut(s)	586, 925, 1188, 1309, 1423
PstNI	CAGNNNCTG	1 cut(s)	335
PsuI	RGATCY	3 cut(s)	664, 1123, 1213
PvuI	CGATCG	1 cut(s)	46
RsaI	GTAC	4 cut(s)	161, 576, 1294, 1394
RsaNI	GTAC	4 cut(s)	160, 575, 1293, 1393
SatI	GCNGC	5 cut(s)	285, 366, 980, 1316, 1436
Sau3AI	GATC	8 cut(s)	43, 102, 165, 481, 664, 952, 1123, 1213
Sau96I	GGNCC	5 cut(s)	586, 925, 1188, 1309, 1423
SchI	GAGTC	3 cut(s)	179, 913, 1400
ScrFI	CCNGG	4 cut(s)	498, 518, 536, 1083
SexAI	ACCWGGT	2 cut(s)	534, 1081
SfcI	CTRYAG	1 cut(s)	612
SinI	GGWCC	4 cut(s)	586, 925, 1188, 1423
SmlI	CTYRAG	2 cut(s)	71, 983
SmoI	CTYRAG	2 cut(s)	71, 983
Sse9I	AATT	9 cut(s)	65, 179, 273, 776, 818, 992, 1238, 1304, 1380
SseBI	AGGCCT	2 cut(s)	445, 610
SsiI	CCGC	1 cut(s)	344
SspMI	CTAG	1 cut(s)	1430
StuI	AGGCCT	2 cut(s)	445, 610
StyD4I	CCNGG	4 cut(s)	496, 516, 534, 1081
StyI	CCWWGG	1 cut(s)	390
TaaI	ACNGT	3 cut(s)	337, 739, 974
TaiI	ACGT	2 cut(s)	376, 1365
TaqI	TCGA	2 cut(s)	168, 1409
TasI	AATT	9 cut(s)	65, 179, 273, 776, 818, 992, 1238, 1304, 1380
TatI	WGTACW	1 cut(s)	159
TfiI	GAWTC	2 cut(s)	31, 1328
TscAI	CASTG	1 cut(s)	742
TseI	GCWGC	5 cut(s)	284, 365, 979, 1315, 1435
TspDTI	ATGAA	5 cut(s)	242, 662, 1053, 1100, 1128
TspRI	CASTG	1 cut(s)	742
Van91I	CCANNNNNTGG	1 cut(s)	1085
VpaK11BI	GGWCC	4 cut(s)	586, 925, 1188, 1423
XagI	CCTNNNNNAGG	2 cut(s)	604, 1086
XapI	RAATTY	5 cut(s)	65, 179, 776, 818, 1238
XceI	RCATGY	3 cut(s)	550, 1027, 1280
XspI	CTAG	1 cut(s)	1430
ZraI	GACGTC	1 cut(s)	1363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.