Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0009023

Physical Location & Seq

Genomic Coordinates Reverse (-)

17140986 .. 17146627

Gene Structure 5642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G164600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1620 bp

ATGGGATTCTTCAGTACGATTTTTGGGTTTTGTGGATTTGGACTTGGTATATCGATTGGTCTTGTGGCTGGCTATTTCCTTTTCATCTACGTCCAATCTACCGATGTTCAGAATCCCGAAATTCGTCCTTTGGTTGATCAAGATACAGAAACGTTGCAGCGGATGCTTCCTGAGATACCTCTTTGGGTGAAAAATCCAGACTATGATCGTCTTGATTGGCTAAACAAATTCCTTGAATATATGTGGCCTTATCTGGACAAGGCAATCTGCAAGACTGCAAAAGAAATTGCAAAGCCCATAATAGCTGAGGAAATTCCAAAGTACAAGATTGAGTCTGTTGAATTTGAAACACTGACTTTAGGTTCCTTACCACCAACTTTTCAAGGGATGAAAGTTTATGTCACTGATGAGAAGGAGTTGATTATGGAACCCTCCATAAAATGGGCTGGAAATCCTAATGTCCTTGTTGCTGTGAAAGCATTTGGATTGAAAGCAACTGTTCAGGTGGTGGATTTACAAGTTTTTGCTGCACCACGTATTACTTTGAAGCCGTTGGTTCCAAGCTTTCCTTGTTTTGCCCAAATAAATGTATCTCTCATGGATAAGCCTTATGTTGATTTTGGATTAAAGCTAATAGGAGCTGATCTTATGTCAATACCTGGCCTTTATAGATTCGTCCAGGAGCTTATCAAAGATCAGGTTGCTAACATGTATCTGTGGCCGAAAACTCTTGAAGTACCAATAATGGACCCAGCGAAAGCCTTTAACAGGCCTGTAGGAATTCTCCATGTGAAGGTTCTGAGGGCAATGAAGTTAAAAAAGAAGGATCTTCTTGGTGCTTCGGACCCTTATGTGAAACTAAAGCTCACTGAGAACAATCTTCCATCACACAAGACCAGTGTCAAGCACAAGAACCTGAATCCTGAATGGAATGAGGAATTTAACATCGTTGTTAAAGATCCGCAATCTCAGGCTTTAGAACTTCTTGTTTATGACTGGGAGAAGGTGGGCAAACATGAAAAAATGGGTATGAATGTAGTACCTCTGAAAGATCTACCCAAGGATGAGCCAAAGGTTTTGACTGTCGACCTTCTTAAAAATATGGACTTAAATGATGCTCAAAATGAGAAGCAGCGTGGGCAGCTTGAAGTGGAATTGACTTATAAACCTTTTAAAGAGGAGGACATGCAAAAAGGATTTGAAGAAACACTGACAGTACAGAAGGCTCCTGAGGGAACTCCAGCTGGTGGAGGTTTGCTTGTTATCGTAGTTCATGAAGGTCAAGATCTTGAAGGAAAGCACCACTGTAATCCATCTGCTCGACTTATTTTCAGAGGGGAGGAAAAAAGGACCAAGCCACTAAAGAAAAGCAGAGATCCACGATGGGCCGAGGATTTTCAATTTATGTGTGAGGAACCTCCCATCAATGACAAATTACATGTGGAAGTTGTCAGCACCTCATCAAGAATGGGCTTGCTGCATCCAAAGGAATCTCTGGGGTATGTTCAGATCAGTCTTTCGGACGTTGTGTCCAACAAACGGATCAACCAGAAGTACCATCTTATAGACTCAAAGAATGGTCAGATCCAGATTGAGCTGCAATGGAGAACTGCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 SMP_LBD

Protein Analysis

540

Amino Acids

61.42

Weight (kDa)

6.28

Isoelectric Point (pI)

33.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20990 AT2G20990 AT2G20990 AT2G21010
fragaria_vesca	FvH4_2g01300 FvH4_2g01300
malus_domestica	MD05G1120700.v1.1
prunus_persica	Prupe.8G164600_v2.0.a1 Prupe.8G164600_v2.0.a1 Prupe.8G164600_v2.0.a1
pyrus_communis	pycom05g11460
rosa_chinensis	RchiOBHm_Chr6g0252191
rosa_laevigata	RLG00000015404
rosa_multiflora	Rmu_sc0002522.1_g000001
rosa_roxburghii	Rroxscaffold_7G00216260
rosa_rugosa	Rorug05G0505900.1
rosa_samantha	Rh6AG019800 Rh6BG015200 Rh6CG012200 Rh6DG013500
rosa_wichuraiana	Rw6G000080 Rw6G001620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1164
AccB7I	CCANNNNNTGG	2 cut(s)	441, 1247
AccI	GTMKAC	1 cut(s)	1086
AciI	CCGC	2 cut(s)	160, 962
AclI	AACGTT	1 cut(s)	152
AclWI	GGATC	5 cut(s)	834, 953, 1370, 1550, 1579
AcoI	YGGCCR	1 cut(s)	719
AcsI	RAATTY	6 cut(s)	120, 227, 312, 341, 780, 938
AfaI	GTAC	6 cut(s)	16, 323, 738, 1041, 1218, 1556
AfiI	CCNNNNNNNGG	5 cut(s)	441, 768, 793, 1247, 1539
AflIII	ACRYGT	2 cut(s)	708, 1438
AhdI	GACNNNNNGTC	1 cut(s)	1528
AjnI	CCWGG	2 cut(s)	658, 678
AluBI	AGCT	9 cut(s)	305, 564, 631, 641, 685, 865, 1144, 1244, 1597
AluI	AGCT	9 cut(s)	305, 564, 631, 641, 685, 865, 1144, 1244, 1597
AlwI	GGATC	5 cut(s)	834, 953, 1370, 1550, 1579
AoxI	GGCC	5 cut(s)	245, 661, 719, 770, 1386
ApeKI	GCWGC	6 cut(s)	157, 527, 1132, 1141, 1477, 1597
ApoI	RAATTY	6 cut(s)	120, 227, 312, 341, 780, 938
AspS9I	GGNCC	4 cut(s)	748, 844, 1350, 1386
AsuHPI	GGTGA	1 cut(s)	199
AvaII	GGWCC	3 cut(s)	748, 844, 1350
AxyI	CCTNAGG	1 cut(s)	1230
BbvCI	CCTCAGC	1 cut(s)	306
BbvI	GCAGC	6 cut(s)	169, 514, 1144, 1153, 1464, 1584
BccI	CCATC	5 cut(s)	892, 1321, 1377, 1430, 1566
BceAI	ACGGC	1 cut(s)	535
BciT130I	CCWGG	2 cut(s)	660, 680
BclI	TGATCA	1 cut(s)	136
BfmI	CTRYAG	1 cut(s)	774
BglII	AGATCT	2 cut(s)	1051, 1285
BisI	GCNGC	6 cut(s)	158, 528, 1133, 1142, 1478, 1598
BlsI	GCNGC	6 cut(s)	159, 529, 1134, 1143, 1479, 1599
Bme1390I	CCNGG	2 cut(s)	660, 680
Bme18I	GGWCC	3 cut(s)	748, 844, 1350
BmeRI	GACNNNNNGTC	1 cut(s)	1528
BmgT120I	GGNCC	4 cut(s)	748, 844, 1350, 1386
BmiI	GGNNCC	7 cut(s)	364, 429, 558, 750, 846, 1227, 1416
BmrFI	CCNGG	2 cut(s)	660, 680
BmrI	ACTGGG	1 cut(s)	1006
BmsI	GCATC	3 cut(s)	153, 1105, 1489
BmuI	ACTGGG	1 cut(s)	1006
BoxI	GACNNNNGTC	1 cut(s)	899
BpmI	CTGGAG	1 cut(s)	1224
Bpu10I	CCTNAGC	1 cut(s)	306
Bsa29I	ATCGAT	1 cut(s)	53
BsaAI	YACGTR	1 cut(s)	536
BsaJI	CCNNGG	2 cut(s)	1059, 1389
Bsc4I	CCNNNNNNNGG	5 cut(s)	441, 768, 793, 1247, 1539
Bse1I	ACTGG	2 cut(s)	897, 1001
Bse21I	CCTNAGG	1 cut(s)	1230
Bse3DI	GCAATG	2 cut(s)	813, 1607
BseBI	CCWGG	2 cut(s)	660, 680
BseCI	ATCGAT	1 cut(s)	53
BseDI	CCNNGG	2 cut(s)	1059, 1389
BseGI	GGATG	4 cut(s)	168, 393, 1069, 1480
BseLI	CCNNNNNNNGG	5 cut(s)	441, 768, 793, 1247, 1539
BseMI	GCAATG	2 cut(s)	813, 1607
BseMII	CTCAG	6 cut(s)	162, 297, 791, 861, 983, 1221
BseNI	ACTGG	2 cut(s)	897, 1001
BseRI	GAGGAG	1 cut(s)	1193
BseXI	GCAGC	6 cut(s)	169, 514, 1144, 1153, 1464, 1584
BseYI	CCCAGC	1 cut(s)	751
BsgI	GTGCAG	1 cut(s)	513
BshFI	GGCC	5 cut(s)	247, 663, 721, 772, 1388
BshVI	ATCGAT	1 cut(s)	53
BslI	CCNNNNNNNGG	5 cut(s)	441, 768, 793, 1247, 1539
BsnI	GGCC	5 cut(s)	247, 663, 721, 772, 1388
BspACI	CCGC	2 cut(s)	160, 962
BspANI	GGCC	5 cut(s)	247, 663, 721, 772, 1388
BspCNI	CTCAG	6 cut(s)	163, 298, 792, 862, 982, 1222
BspDI	ATCGAT	1 cut(s)	53
BspHI	TCATGA	1 cut(s)	1273
BspLI	GGNNCC	7 cut(s)	364, 429, 558, 750, 846, 1227, 1416
BspPI	GGATC	5 cut(s)	834, 953, 1370, 1550, 1579
BsrDI	GCAATG	2 cut(s)	813, 1607
BsrI	ACTGG	2 cut(s)	897, 1001
BssECI	CCNNGG	2 cut(s)	1059, 1389
BssT1I	CCWWGG	1 cut(s)	1059
Bst2UI	CCWGG	2 cut(s)	660, 680
Bst4CI	ACNGT	4 cut(s)	499, 1084, 1216, 1307
BstAPI	GCANNNNNTGC	1 cut(s)	163
BstBAI	YACGTR	1 cut(s)	536
BstC8I	GCNNGC	2 cut(s)	70, 1475
BstDEI	CTNAG	6 cut(s)	171, 306, 800, 870, 969, 1230
BstENI	CCTNNNNNAGG	1 cut(s)	766
BstF5I	GGATG	4 cut(s)	168, 393, 1069, 1480
BstMWI	GCNNNNNNNGC	4 cut(s)	163, 476, 1138, 1141
BstNI	CCWGG	2 cut(s)	660, 680
BstNSI	RCATGY	3 cut(s)	712, 1189, 1442
BstPAI	GACNNNNGTC	1 cut(s)	899
BstSCI	CCNGG	2 cut(s)	658, 678
BstSFI	CTRYAG	1 cut(s)	774
BstV1I	GCAGC	6 cut(s)	169, 514, 1144, 1153, 1464, 1584
BstX2I	RGATCY	6 cut(s)	826, 958, 1051, 1285, 1375, 1584
BstYI	RGATCY	6 cut(s)	826, 958, 1051, 1285, 1375, 1584
Bsu15I	ATCGAT	1 cut(s)	53
Bsu36I	CCTNAGG	1 cut(s)	1230
BsuRI	GGCC	5 cut(s)	247, 663, 721, 772, 1388
BsuTUI	ATCGAT	1 cut(s)	53
BtsCI	GGATG	4 cut(s)	168, 393, 1069, 1480
BtsIMutI	CAGTG	6 cut(s)	350, 402, 867, 904, 1208, 1303
Cac8I	GCNNGC	2 cut(s)	70, 1475
CciI	TCATGA	1 cut(s)	1273
Cfr13I	GGNCC	4 cut(s)	748, 844, 1350, 1386
ClaI	ATCGAT	1 cut(s)	53
Csp6I	GTAC	6 cut(s)	15, 322, 737, 1040, 1217, 1555
CviAII	CATG	7 cut(s)	598, 709, 788, 1016, 1186, 1274, 1439
CviQI	GTAC	6 cut(s)	15, 322, 737, 1040, 1217, 1555
DdeI	CTNAG	6 cut(s)	171, 306, 800, 870, 969, 1230
DraI	TTTAAA	1 cut(s)	1174
DriI	GACNNNNNGTC	1 cut(s)	1528
EaeI	YGGCCR	1 cut(s)	719
Eam1105I	GACNNNNNGTC	1 cut(s)	1528
Eco130I	CCWWGG	1 cut(s)	1059
Eco147I	AGGCCT	1 cut(s)	772
Eco47I	GGWCC	3 cut(s)	748, 844, 1350
Eco81I	CCTNAGG	1 cut(s)	1230
EcoNI	CCTNNNNNAGG	1 cut(s)	766
EcoRI	GAATTC	1 cut(s)	780
EcoRII	CCWGG	2 cut(s)	658, 678
EcoT14I	CCWWGG	1 cut(s)	1059
ErhI	CCWWGG	1 cut(s)	1059
FaeI	CATG	7 cut(s)	601, 712, 791, 1019, 1189, 1277, 1442
FalI	AAGNNNNNCTT	2 cut(s)	553, 585
FatI	CATG	7 cut(s)	597, 708, 787, 1015, 1185, 1273, 1438
FbaI	TGATCA	1 cut(s)	136
FblI	GTMKAC	1 cut(s)	1086
Fnu4HI	GCNGC	6 cut(s)	158, 528, 1133, 1142, 1478, 1598
FokI	GGATG	4 cut(s)	175, 400, 1076, 1467
Fsp4HI	GCNGC	6 cut(s)	158, 528, 1133, 1142, 1478, 1598
GluI	GCNGC	6 cut(s)	158, 528, 1133, 1142, 1478, 1598
GsaI	CCCAGC	1 cut(s)	755
GsuI	CTGGAG	1 cut(s)	1224
HaeIII	GGCC	5 cut(s)	247, 663, 721, 772, 1388
Hin1II	CATG	7 cut(s)	601, 712, 791, 1019, 1189, 1277, 1442
HincII	GTYRAC	1 cut(s)	1087
HindII	GTYRAC	1 cut(s)	1087
HindIII	AAGCTT	1 cut(s)	562
HinfI	GANTC	7 cut(s)	6, 112, 332, 672, 919, 1490, 1568
HphI	GGTGA	1 cut(s)	199
Hpy166II	GTNNAC	1 cut(s)	1087
Hpy188I	TCNGA	8 cut(s)	111, 801, 844, 1047, 1334, 1509, 1522, 1584
Hpy8I	GTNNAC	1 cut(s)	1087
HpyAV	CCTTC	8 cut(s)	406, 787, 817, 997, 1100, 1216, 1271, 1286
HpyCH4III	ACNGT	4 cut(s)	499, 1084, 1216, 1307
HpyCH4IV	ACGT	4 cut(s)	90, 152, 535, 1524
HpyCH4V	TGCA	8 cut(s)	157, 270, 278, 290, 530, 1189, 1480, 1600
HpyF10VI	GCNNNNNNNGC	4 cut(s)	163, 476, 1138, 1141
HpyF3I	CTNAG	6 cut(s)	171, 306, 800, 870, 969, 1230
HpySE526I	ACGT	4 cut(s)	90, 152, 535, 1524
Hsp92II	CATG	7 cut(s)	601, 712, 791, 1019, 1189, 1277, 1442
Ksp22I	TGATCA	1 cut(s)	136
LmnI	GCTCC	3 cut(s)	638, 682, 1231
Lsp1109I	GCAGC	6 cut(s)	169, 514, 1144, 1153, 1464, 1584
LweI	GCATC	3 cut(s)	153, 1105, 1489
MaeII	ACGT	4 cut(s)	90, 152, 535, 1524
MaeIII	GTNAC	1 cut(s)	400
MboII	GAAGA	3 cut(s)	821, 872, 1214
MflI	RGATCY	6 cut(s)	826, 958, 1051, 1285, 1375, 1584
MlyI	GAGTC	2 cut(s)	341, 1562
MmeI	TCCRAC	1 cut(s)	1557
MseI	TTAA	8 cut(s)	626, 765, 815, 942, 954, 1095, 1109, 1173
MspA1I	CMGCKG	2 cut(s)	160, 1244
MspR9I	CCNGG	2 cut(s)	660, 680
MvaI	CCWGG	2 cut(s)	660, 680
MwoI	GCNNNNNNNGC	4 cut(s)	163, 476, 1138, 1141
NlaIII	CATG	7 cut(s)	601, 712, 791, 1019, 1189, 1277, 1442
NlaIV	GGNNCC	7 cut(s)	364, 429, 558, 750, 846, 1227, 1416
NmeAIII	GCCGAG	1 cut(s)	1414
NmuCI	GTSAC	1 cut(s)	400
NspI	RCATGY	3 cut(s)	712, 1189, 1442
PagI	TCATGA	1 cut(s)	1273
PceI	AGGCCT	1 cut(s)	772
PciI	ACATGT	2 cut(s)	708, 1438
PfeI	GAWTC	5 cut(s)	6, 112, 672, 919, 1490
PflMI	CCANNNNNTGG	2 cut(s)	441, 1247
PfoI	TCCNGGA	1 cut(s)	678
PkrI	GCNGC	6 cut(s)	159, 529, 1134, 1143, 1479, 1599
PleI	GAGTC	2 cut(s)	340, 1562
PpsI	GAGTC	2 cut(s)	340, 1562
Ppu21I	YACGTR	1 cut(s)	536
PscI	ACATGT	2 cut(s)	708, 1438
PshAI	GACNNNNGTC	1 cut(s)	899
PsiI	TTATAA	1 cut(s)	1164
Psp1406I	AACGTT	1 cut(s)	152
Psp6I	CCWGG	2 cut(s)	658, 678
PspFI	CCCAGC	1 cut(s)	751
PspGI	CCWGG	2 cut(s)	658, 678
PspN4I	GGNNCC	7 cut(s)	364, 429, 558, 750, 846, 1227, 1416
PspPI	GGNCC	4 cut(s)	748, 844, 1350, 1386
PsuI	RGATCY	6 cut(s)	826, 958, 1051, 1285, 1375, 1584
PvuII	CAGCTG	1 cut(s)	1244
RsaI	GTAC	6 cut(s)	16, 323, 738, 1041, 1218, 1556
RsaNI	GTAC	6 cut(s)	15, 322, 737, 1040, 1217, 1555
SalI	GTCGAC	1 cut(s)	1085
SaqAI	TTAA	8 cut(s)	626, 765, 815, 942, 954, 1095, 1109, 1173
SatI	GCNGC	6 cut(s)	158, 528, 1133, 1142, 1478, 1598
Sau96I	GGNCC	4 cut(s)	748, 844, 1350, 1386
SchI	GAGTC	2 cut(s)	341, 1562
ScrFI	CCNGG	2 cut(s)	660, 680
SfaNI	GCATC	3 cut(s)	153, 1105, 1489
SfcI	CTRYAG	1 cut(s)	774
SinI	GGWCC	3 cut(s)	748, 844, 1350
SseBI	AGGCCT	1 cut(s)	772
SsiI	CCGC	2 cut(s)	160, 962
StuI	AGGCCT	1 cut(s)	772
StyD4I	CCNGG	2 cut(s)	658, 678
StyI	CCWWGG	1 cut(s)	1059
TaaI	ACNGT	4 cut(s)	499, 1084, 1216, 1307
TaiI	ACGT	4 cut(s)	93, 155, 538, 1527
TaqI	TCGA	3 cut(s)	53, 1086, 1321
TatI	WGTACW	2 cut(s)	321, 1216
TfiI	GAWTC	5 cut(s)	6, 112, 672, 919, 1490
Tru1I	TTAA	8 cut(s)	626, 765, 815, 942, 954, 1095, 1109, 1173
Tru9I	TTAA	8 cut(s)	626, 765, 815, 942, 954, 1095, 1109, 1173
TscAI	CASTG	6 cut(s)	357, 409, 874, 904, 1215, 1310
TseFI	GTSAC	1 cut(s)	400
TseI	GCWGC	6 cut(s)	157, 527, 1132, 1141, 1477, 1597
Tsp45I	GTSAC	1 cut(s)	400
TspDTI	ATGAA	7 cut(s)	73, 404, 824, 1032, 1046, 1262, 1290
TspGWI	ACGGA	1 cut(s)	1555
TspRI	CASTG	6 cut(s)	357, 409, 874, 904, 1215, 1310
Van91I	CCANNNNNTGG	2 cut(s)	441, 1247
VpaK11BI	GGWCC	3 cut(s)	748, 844, 1350
XagI	CCTNNNNNAGG	1 cut(s)	766
XapI	RAATTY	6 cut(s)	120, 227, 312, 341, 780, 938
XceI	RCATGY	3 cut(s)	712, 1189, 1442
XmiI	GTMKAC	1 cut(s)	1086

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.