FvH4_2g01300

Synaptotagmin-like mitochondrial-lipid-binding domain

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
1230649 .. 1237163
6515 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g01300.t1

Sequence Viewer

Length: 1620 bp
ATGGGATTCTTCAGCACCATTTTTGGCTTCTTTGGATTTGGACTAGGGATTTCGATTGGACTCGTCGCTGGCTATTTCCTTTTCATTTATGTCCAATCCTCTGATGTTGAGGACCCTGAAATTCAGCCGTTGGTTGATCAAGACCCCAAAACTTTGGAGCGGATGCTTCCTGAGATACCTCTTTGGGTGAAGAATCCAGACTATGATCGTCTTGATTGGTTAAACAAATTTCTTGAATATATGTGGCCTTATCTTGACAAGGCGATCTGCAAAACTGCTAAAGATATTGCAAAGCCCATAATTGCTGAGGAAATACCAAAGTACAAGATTGATTCTGTTGAATTTGAGAAGCTGACTTTAGGTTCCCTACCACCAACTTTTCAAGGTATGAAGGTTTATGTAACTGATGAGAAGGAGCTGATTATGGAACCCTCCATTAAATGGGCTGCAAATCCTAATATCCTTGTTGCTGCTAAAGCATATGGAATCACAGCAACTGTTCAGGTGGTTGATGCGCAAGTTTTTGCTTCACCACGTATAACTTTGAAGCCTTTGGTCCCAAGCTTTCCTTGTTTTGCCCAAATCAATGTGTCTCTCATGGACAAGCCTTATGTGGACTTTGGATTAAAGCTTATAGGTGCTGATCTTATGTCAATACCTGGCCTTTACACATATGTCCAGGAGTTTATCAAAGACCAGGTTGCTAACATGTATCTCTGGCCCAAAACTCTTGAAGTACCAATAATGGACCCAGCAAAAGCCTTTAACAGGCCTGTAGGACTTCTCCGTGTGAAGGTTCTAAGGGCAATGAAGTTAAGGAAGATGGATCTTCTTGGTGCTTCAGACCCTTATGTAAAACTAAAGCTCACAGAAAGCAATATGCCATCAAAGAAGACCACGATTAAGCAGAAGAACCTGAACCCTGAATGGAATGAGGAATTTAATATGGTTGTCAAAGACCCACAATCTCAGGCTTTAGAGTTTATGGTTTATGACTGGGATAAGGTGGGAAAACATGAGAAAATGGGTATCAACGTAATACCTTTGAAGGACCTCCCCAATGATGAGCCAAAAGTTTTGACTCTGGACCTCCTTAAAACTATGGACTTAAATGATCCTCAGAATGAGAAGAACCGTGGGCAGCTTGAGTTGGAACTGACTTATAAACCCTTCGCGGAGGAGGACTTGCAGAAAGGGTATGATGAAACACAGACATTAGAGAAGGCTCCTGAAGGAACGCCACCTGGTGGAGGTTTGCTCGTTGTCATAGTTCATGAAGGTCAAGATCTTGAAGGAAAGCACCATTGTAATCCATCTGTGCGACTTATTCTCAGGGGGGAGGAAAAAAGAACCAAGCACCTAAAGAAGAGCAGAGATCCAAGATGGGAAGAAGAGTTTCAATTTGTGCTTGAAGAACCTCCCACTAATGATAAATTACATGTGGAGGTGGTCAGTACCTCATCAAAATTGGGCCTGCTGCATGGAAAGGAATCTCTGGGCTATGTTCAAATCAGTCTTTCTGACGTCATTTCCAACAGACGAATCAACCAGAAGTACCATCTCATAGACTCGAAGAATGGACAGGTCCAGCTAGAGCTGCAATGGAGAACTGCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

540

Amino Acids

61.49

Weight (kDa)

5.56

Isoelectric Point (pI)

34.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SMP_LBD PF17047 67 - 248 1.7e-18 Synaptotagmin-like mitochondrial-lipid-binding domain
C2 PF00168 260 - 359 6.4e-26 C2 domain
C2 PF00168 419 - 521 1e-14 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1164
AatII GACGTC 1 cut(s) 1527
Acc16I TGCGCA 1 cut(s) 516
AccB7I CCANNNNNTGG 2 cut(s) 441, 1247
AccBSI CCGCTC 1 cut(s) 160
AccII CGCG 1 cut(s) 1175
AciI CCGC 2 cut(s) 160, 1175
AclWI GGATC 3 cut(s) 834, 1109, 1370
AcsI RAATTY 4 cut(s) 120, 227, 341, 938
AcuI CTGAAG 2 cut(s) 825, 1251
AcyI GRCGYC 1 cut(s) 1524
AdeI CACNNNGTG 1 cut(s) 1247
AfaI GTAC 4 cut(s) 323, 738, 1456, 1556
AfiI CCNNNNNNNGG 5 cut(s) 441, 768, 793, 1247, 1250
AflIII ACRYGT 2 cut(s) 708, 1438
AjnI CCWGG 4 cut(s) 658, 678, 696, 1243
AluBI AGCT 8 cut(s) 352, 418, 564, 631, 865, 1144, 1591, 1597
AluI AGCT 8 cut(s) 352, 418, 564, 631, 865, 1144, 1591, 1597
Alw26I GTCTC 1 cut(s) 597
AlwI GGATC 3 cut(s) 834, 1109, 1370
AlwNI CAGNNNCTG 1 cut(s) 497
AoxI GGCC 5 cut(s) 245, 661, 719, 770, 1471
ApeKI GCWGC 5 cut(s) 446, 470, 1141, 1477, 1597
ApoI RAATTY 4 cut(s) 120, 227, 341, 938
Asp700I GAANNNNTTC 1 cut(s) 1395
AspLEI GCGC 1 cut(s) 517
AspS9I GGNCC 8 cut(s) 112, 556, 720, 748, 1051, 1087, 1471, 1585
AsuHPI GGTGA 2 cut(s) 199, 522
AvaII GGWCC 6 cut(s) 112, 556, 748, 1051, 1087, 1585
BbsI GAAGAC 1 cut(s) 899
BbvCI CCTCAGC 1 cut(s) 306
BbvI GCAGC 5 cut(s) 433, 457, 1153, 1464, 1584
BccI CCATC 5 cut(s) 817, 892, 1321, 1377, 1566
BceAI ACGGC 1 cut(s) 112
BciT130I CCWGG 4 cut(s) 660, 680, 698, 1245
BclI TGATCA 1 cut(s) 136
BcoDI GTCTC 1 cut(s) 597
BfaI CTAG 2 cut(s) 44, 1592
BfmI CTRYAG 1 cut(s) 774
BglII AGATCT 1 cut(s) 1285
BisI GCNGC 5 cut(s) 447, 471, 1142, 1478, 1598
BlsI GCNGC 5 cut(s) 448, 472, 1143, 1479, 1599
Bme1390I CCNGG 4 cut(s) 660, 680, 698, 1245
Bme18I GGWCC 6 cut(s) 112, 556, 748, 1051, 1087, 1585
BmgT120I GGNCC 8 cut(s) 112, 556, 720, 748, 1051, 1087, 1471, 1585
BmiI GGNNCC 6 cut(s) 114, 364, 429, 558, 750, 1227
BmrFI CCNGG 4 cut(s) 660, 680, 698, 1245
BmrI ACTGGG 1 cut(s) 1006
BmsI GCATC 2 cut(s) 153, 502
BmuI ACTGGG 1 cut(s) 1006
BpiI GAAGAC 1 cut(s) 899
BplI GAGNNNNNCTC 2 cut(s) 1242, 1274
Bpu10I CCTNAGC 1 cut(s) 306
BpuEI CTTGAG 1 cut(s) 1166
BsaAI YACGTR 1 cut(s) 536
BsaHI GRCGYC 1 cut(s) 1524
BsaJI CCNNGG 1 cut(s) 1135
Bsc4I CCNNNNNNNGG 5 cut(s) 441, 768, 793, 1247, 1250
Bse1I ACTGG 1 cut(s) 1001
Bse3DI GCAATG 2 cut(s) 813, 1607
BseBI CCWGG 4 cut(s) 660, 680, 698, 1245
BseDI CCNNGG 1 cut(s) 1135
BseGI GGATG 1 cut(s) 168
BseLI CCNNNNNNNGG 5 cut(s) 441, 768, 793, 1247, 1250
BseMI GCAATG 2 cut(s) 813, 1607
BseMII CTCAG 5 cut(s) 162, 297, 983, 1133, 1345
BseNI ACTGG 1 cut(s) 1001
BseRI GAGGAG 1 cut(s) 1193
BseXI GCAGC 5 cut(s) 433, 457, 1153, 1464, 1584
BseYI CCCAGC 1 cut(s) 751
Bsh1236I CGCG 1 cut(s) 1175
BshFI GGCC 5 cut(s) 247, 663, 721, 772, 1473
BslFI GGGAC 1 cut(s) 542
BslI CCNNNNNNNGG 5 cut(s) 441, 768, 793, 1247, 1250
BsmAI GTCTC 1 cut(s) 597
BsmFI GGGAC 1 cut(s) 542
BsnI GGCC 5 cut(s) 247, 663, 721, 772, 1473
Bsp143I GATC 8 cut(s) 136, 205, 264, 643, 826, 1114, 1285, 1375
BspACI CCGC 2 cut(s) 160, 1175
BspANI GGCC 5 cut(s) 247, 663, 721, 772, 1473
BspCNI CTCAG 5 cut(s) 163, 298, 982, 1132, 1344
BspFNI CGCG 1 cut(s) 1175
BspHI TCATGA 1 cut(s) 1273
BspLI GGNNCC 6 cut(s) 114, 364, 429, 558, 750, 1227
BspPI GGATC 3 cut(s) 834, 1109, 1370
BspQI GCTCTTC 1 cut(s) 1361
BsrBI CCGCTC 1 cut(s) 160
BsrDI GCAATG 2 cut(s) 813, 1607
BsrI ACTGG 1 cut(s) 1001
BssECI CCNNGG 1 cut(s) 1135
BssMI GATC 8 cut(s) 136, 205, 264, 643, 826, 1114, 1285, 1375
BssNI GRCGYC 1 cut(s) 1524
Bst2UI CCWGG 4 cut(s) 660, 680, 698, 1245
Bst4CI ACNGT 2 cut(s) 499, 1136
Bst6I CTCTTC 2 cut(s) 1361, 1386
BstACI GRCGYC 1 cut(s) 1524
BstBAI YACGTR 1 cut(s) 536
BstC8I GCNNGC 2 cut(s) 70, 1475
BstDEI CTNAG 6 cut(s) 171, 306, 800, 969, 1119, 1331
BstDSI CCRYGG 1 cut(s) 1135
BstENI CCTNNNNNAGG 2 cut(s) 766, 1248
BstF5I GGATG 1 cut(s) 168
BstFNI CGCG 1 cut(s) 1175
BstHHI GCGC 1 cut(s) 517
BstKTI GATC 8 cut(s) 139, 208, 267, 646, 829, 1117, 1288, 1378
BstMAI GTCTC 1 cut(s) 597
BstMBI GATC 8 cut(s) 136, 205, 264, 643, 826, 1114, 1285, 1375
BstMWI GCNNNNNNNGC 2 cut(s) 476, 1597
BstNI CCWGG 4 cut(s) 660, 680, 698, 1245
BstNSI RCATGY 2 cut(s) 712, 1442
BstSCI CCNGG 4 cut(s) 658, 678, 696, 1243
BstSFI CTRYAG 1 cut(s) 774
BstUI CGCG 1 cut(s) 1175
BstV1I GCAGC 5 cut(s) 433, 457, 1153, 1464, 1584
BstV2I GAAGAC 1 cut(s) 899
BstX2I RGATCY 3 cut(s) 826, 1285, 1375
BstXI CCANNNNNNTGG 1 cut(s) 154
BstYI RGATCY 3 cut(s) 826, 1285, 1375
BsuRI GGCC 5 cut(s) 247, 663, 721, 772, 1473
BtgI CCRYGG 1 cut(s) 1135
BtsCI GGATG 1 cut(s) 168
Cac8I GCNNGC 2 cut(s) 70, 1475
CaiI CAGNNNCTG 1 cut(s) 497
CciI TCATGA 1 cut(s) 1273
CfoI GCGC 1 cut(s) 517
Cfr13I GGNCC 8 cut(s) 112, 556, 720, 748, 1051, 1087, 1471, 1585
CsiI ACCWGGT 2 cut(s) 696, 1243
Csp6I GTAC 4 cut(s) 322, 737, 1455, 1555
CviAII CATG 6 cut(s) 598, 709, 1016, 1274, 1439, 1481
CviQI GTAC 4 cut(s) 322, 737, 1455, 1555
DdeI CTNAG 6 cut(s) 171, 306, 800, 969, 1119, 1331
DpnI GATC 8 cut(s) 138, 207, 266, 645, 828, 1116, 1287, 1377
DpnII GATC 8 cut(s) 136, 205, 264, 643, 826, 1114, 1285, 1375
DraIII CACNNNGTG 1 cut(s) 1247
Eam1104I CTCTTC 2 cut(s) 1361, 1386
EarI CTCTTC 2 cut(s) 1361, 1386
Eco147I AGGCCT 1 cut(s) 772
Eco47I GGWCC 6 cut(s) 112, 556, 748, 1051, 1087, 1585
Eco57I CTGAAG 2 cut(s) 825, 1251
EcoNI CCTNNNNNAGG 2 cut(s) 766, 1248
EcoO109I RGGNCCY 2 cut(s) 112, 1051
EcoRII CCWGG 4 cut(s) 658, 678, 696, 1243
FaeI CATG 6 cut(s) 601, 712, 1019, 1277, 1442, 1484
FalI AAGNNNNNCTT 2 cut(s) 553, 585
FaqI GGGAC 1 cut(s) 542
FatI CATG 6 cut(s) 597, 708, 1015, 1273, 1438, 1480
FauNDI CATATG 2 cut(s) 481, 673
FbaI TGATCA 1 cut(s) 136
Fnu4HI GCNGC 5 cut(s) 447, 471, 1142, 1478, 1598
FokI GGATG 1 cut(s) 175
Fsp4HI GCNGC 5 cut(s) 447, 471, 1142, 1478, 1598
FspBI CTAG 2 cut(s) 44, 1592
FspI TGCGCA 1 cut(s) 516
GlaI GCGC 1 cut(s) 516
GluI GCNGC 5 cut(s) 447, 471, 1142, 1478, 1598
GsaI CCCAGC 1 cut(s) 755
HaeIII GGCC 5 cut(s) 247, 663, 721, 772, 1473
HhaI GCGC 1 cut(s) 517
Hin1I GRCGYC 1 cut(s) 1524
Hin1II CATG 6 cut(s) 601, 712, 1019, 1277, 1442, 1484
Hin6I GCGC 1 cut(s) 515
HinP1I GCGC 1 cut(s) 515
HindIII AAGCTT 2 cut(s) 562, 629
HinfI GANTC 9 cut(s) 6, 60, 193, 332, 486, 1081, 1490, 1542, 1568
HphI GGTGA 2 cut(s) 199, 522
Hpy166II GTNNAC 1 cut(s) 616
Hpy188I TCNGA 4 cut(s) 103, 844, 1122, 1522
Hpy8I GTNNAC 1 cut(s) 616
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 9 cut(s) 385, 406, 787, 1042, 1180, 1216, 1226, 1271, 1286
HpyCH4III ACNGT 2 cut(s) 499, 1136
HpyCH4IV ACGT 3 cut(s) 535, 1035, 1524
HpyCH4V TGCA 6 cut(s) 270, 290, 449, 1189, 1480, 1600
HpyF10VI GCNNNNNNNGC 2 cut(s) 476, 1597
HpyF3I CTNAG 6 cut(s) 171, 306, 800, 969, 1119, 1331
HpySE526I ACGT 3 cut(s) 535, 1035, 1524
Hsp92I GRCGYC 1 cut(s) 1524
Hsp92II CATG 6 cut(s) 601, 712, 1019, 1277, 1442, 1484
HspAI GCGC 1 cut(s) 515
Ksp22I TGATCA 1 cut(s) 136
Kzo9I GATC 8 cut(s) 136, 205, 264, 643, 826, 1114, 1285, 1375
LguI GCTCTTC 1 cut(s) 1361
LmnI GCTCC 3 cut(s) 157, 415, 1231
Lsp1109I GCAGC 5 cut(s) 433, 457, 1153, 1464, 1584
LweI GCATC 2 cut(s) 153, 502
MabI ACCWGGT 2 cut(s) 696, 1243
MaeI CTAG 2 cut(s) 44, 1592
MaeII ACGT 3 cut(s) 535, 1035, 1524
MaeIII GTNAC 1 cut(s) 400
MalI GATC 8 cut(s) 138, 207, 266, 645, 828, 1116, 1287, 1377
MbiI CCGCTC 1 cut(s) 160
MboI GATC 8 cut(s) 136, 205, 264, 643, 826, 1114, 1285, 1375
MflI RGATCY 3 cut(s) 826, 1285, 1375
MluCI AATT 8 cut(s) 120, 227, 300, 341, 938, 1400, 1433, 1466
MlyI GAGTC 3 cut(s) 54, 1075, 1562
MmeI TCCRAC 2 cut(s) 1131, 1557
MroXI GAANNNNTTC 1 cut(s) 1395
MseI TTAA 9 cut(s) 221, 438, 626, 765, 815, 903, 942, 1095, 1109
MspR9I CCNGG 4 cut(s) 660, 680, 698, 1245
MvaI CCWGG 4 cut(s) 660, 680, 698, 1245
MvnI CGCG 1 cut(s) 1175
MwoI GCNNNNNNNGC 2 cut(s) 476, 1597
NdeI CATATG 2 cut(s) 481, 673
NdeII GATC 8 cut(s) 136, 205, 264, 643, 826, 1114, 1285, 1375
NlaIII CATG 6 cut(s) 601, 712, 1019, 1277, 1442, 1484
NlaIV GGNNCC 6 cut(s) 114, 364, 429, 558, 750, 1227
NsbI TGCGCA 1 cut(s) 516
NspI RCATGY 2 cut(s) 712, 1442
PagI TCATGA 1 cut(s) 1273
PceI AGGCCT 1 cut(s) 772
PciI ACATGT 2 cut(s) 708, 1438
PciSI GCTCTTC 1 cut(s) 1361
PdmI GAANNNNTTC 1 cut(s) 1395
PfeI GAWTC 6 cut(s) 6, 193, 332, 486, 1490, 1542
PflMI CCANNNNNTGG 2 cut(s) 441, 1247
PfoI TCCNGGA 1 cut(s) 678
PkrI GCNGC 5 cut(s) 448, 472, 1143, 1479, 1599
PleI GAGTC 3 cut(s) 54, 1075, 1562
PpsI GAGTC 3 cut(s) 54, 1075, 1562
Ppu21I YACGTR 1 cut(s) 536
PpuMI RGGWCCY 2 cut(s) 112, 1051
PscI ACATGT 2 cut(s) 708, 1438
PsiI TTATAA 1 cut(s) 1164
Psp5II RGGWCCY 2 cut(s) 112, 1051
Psp6I CCWGG 4 cut(s) 658, 678, 696, 1243
PspFI CCCAGC 1 cut(s) 751
PspGI CCWGG 4 cut(s) 658, 678, 696, 1243
PspN4I GGNNCC 6 cut(s) 114, 364, 429, 558, 750, 1227
PspPI GGNCC 8 cut(s) 112, 556, 720, 748, 1051, 1087, 1471, 1585
PspPPI RGGWCCY 2 cut(s) 112, 1051
PstNI CAGNNNCTG 1 cut(s) 497
PsuI RGATCY 3 cut(s) 826, 1285, 1375
RsaI GTAC 4 cut(s) 323, 738, 1456, 1556
RsaNI GTAC 4 cut(s) 322, 737, 1455, 1555
SapI GCTCTTC 1 cut(s) 1361
SaqAI TTAA 9 cut(s) 221, 438, 626, 765, 815, 903, 942, 1095, 1109
SatI GCNGC 5 cut(s) 447, 471, 1142, 1478, 1598
Sau3AI GATC 8 cut(s) 136, 205, 264, 643, 826, 1114, 1285, 1375
Sau96I GGNCC 8 cut(s) 112, 556, 720, 748, 1051, 1087, 1471, 1585
SchI GAGTC 3 cut(s) 54, 1075, 1562
ScrFI CCNGG 4 cut(s) 660, 680, 698, 1245
SexAI ACCWGGT 2 cut(s) 696, 1243
SfaNI GCATC 2 cut(s) 153, 502
SfcI CTRYAG 1 cut(s) 774
SinI GGWCC 6 cut(s) 112, 556, 748, 1051, 1087, 1585
SmlI CTYRAG 1 cut(s) 1145
SmoI CTYRAG 1 cut(s) 1145
Sse9I AATT 8 cut(s) 120, 227, 300, 341, 938, 1400, 1433, 1466
SseBI AGGCCT 1 cut(s) 772
SsiI CCGC 2 cut(s) 160, 1175
SspMI CTAG 2 cut(s) 44, 1592
StuI AGGCCT 1 cut(s) 772
StyD4I CCNGG 4 cut(s) 658, 678, 696, 1243
TaaI ACNGT 2 cut(s) 499, 1136
TaiI ACGT 3 cut(s) 538, 1038, 1527
TaqI TCGA 2 cut(s) 53, 1571
TasI AATT 8 cut(s) 120, 227, 300, 341, 938, 1400, 1433, 1466
TatI WGTACW 1 cut(s) 321
TfiI GAWTC 6 cut(s) 6, 193, 332, 486, 1490, 1542
Tru1I TTAA 9 cut(s) 221, 438, 626, 765, 815, 903, 942, 1095, 1109
Tru9I TTAA 9 cut(s) 221, 438, 626, 765, 815, 903, 942, 1095, 1109
TseI GCWGC 5 cut(s) 446, 470, 1141, 1477, 1597
TspDTI ATGAA 6 cut(s) 73, 404, 824, 1218, 1262, 1290
TspGWI ACGGA 1 cut(s) 776
Van91I CCANNNNNTGG 2 cut(s) 441, 1247
VpaK11BI GGWCC 6 cut(s) 112, 556, 748, 1051, 1087, 1585
XagI CCTNNNNNAGG 2 cut(s) 766, 1248
XapI RAATTY 4 cut(s) 120, 227, 341, 938
XceI RCATGY 2 cut(s) 712, 1442
XmnI GAANNNNTTC 1 cut(s) 1395
XspI CTAG 2 cut(s) 44, 1592
ZraI GACGTC 1 cut(s) 1525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.