RLG00000015404

Synaptotagmin-like mitochondrial-lipid-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0009023
Physical Location & Seq
Reverse (-)
65613228 .. 65636438
23211 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015404

Sequence Viewer

Length: 1362 bp
ATGGGATTCTTCAGCACCATTTTTGGCCTCTTTGGATTCGGACTAGGGATTTCGATTGGTCTCGTCGCTGGCTATTTCCTTTTCATCTATGTCCAATCCTCAGATGTTGAGAACCCCCAAATTCGGCCGTTGGTTGAGCAAGACTCCGAAACTTTGGAGCGGATGCTTCCTGAGATACCTCTTTGGGTGAAGAATCCAGACTATGATCGTGTTGATTGGCTAAACAAATTTCTTGAGTATATGTGGCCTTATCTTGATAAGGCGATCTGCAAAACTGCTAAAGATATTGCAAAGCCCATAATTGCCGAGGAAATACCGAAGTACAAGATCGAGTCTGTTGAATTTGAGAAGCTGACTTTAGGTTCCTTACCACCAACTTTTCAAGGTATGAAGGTATATGTAACTGATGAGAAGGAGCTGATTATGGAACCCTCAATTAAATGGGCTGCAAATCCTAATGTCCTTGTTGCTGTTAAAGCATATGGAATGACAGCAACTGTTCAGGCGGTTGATGTGCAAGTTTTTGCTGCACCACGTATTACTTTGAAGCCCTTGGTTCCAAGCTTTCCTTGTTTTGCCCAAATCAATGTGTCTCTCATGGACAGGCCTTATGTTGACTTTGGATTAAAGCTTATAGGCGTTGATCTTATGTCAATACCTGGCCTTTACAGATTTGTCCAGGAGCTTATCAAAGACCAGGTTGCTAACATGTATCTCTGGCCAAAAACTCTTGAAGTACCAATAATGGACCCAGCAAAAGCCTTTAACAGGCCTGTAGGACTTCTCCATGTGAAGGTTCTGAGGGCAATGAAGTTAAGAAAGAAAGATCTTCTTGGTGCTTCAGACCCTTATGTAAAACTAAAGCTCACAGAGAGCAATATGCCATCAAAGAAGACCACTGTTAAGCACAAGAACCTGAACCCTGAATGGAATGAGGAATTTAATATGGTTGTCAAAGACCCACAATCTCAGGCTTTAGAATTTTTCGTTTATGACTGGGATAAGGTGGGAAAACATGAGAAAATGGGTATCAATGTAATACCTTTGAAAGACCTCCCCCATGGTGAGCCAAAAGTTTTGACTCTGGACCTCCTTAAAACTATGGACTTAAATGATCCTCAGAATGAGAAGAACCGTGGGCAGCTTGAGTTGGAATTGACTTATAAACCCTTTAAAGAGGAGGACATGCAAAAAGGGTATGAAGAAACACAGACATTAGAGAAGGCTCCTGAGGGAACGCCACCTGGTGGAGGTTTGCTTGTTGTCATAGTTCATGAAGGTCAAGATCTTGAAGGAAAACACCATTGTAATCCATCTGTGCGACTTATTCTCAGAGGGGAGGAAAAAAGGACCAAGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 SMP_LBD

Protein Analysis

454

Amino Acids

51.57

Weight (kDa)

5.94

Isoelectric Point (pI)

31.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SMP_LBD PF17047 67 - 248 3.8e-19 Synaptotagmin-like mitochondrial-lipid-binding domain
C2 PF00168 260 - 359 6.8e-26 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1164
AccB7I CCANNNNNTGG 1 cut(s) 1247
AccBSI CCGCTC 1 cut(s) 160
AciI CCGC 2 cut(s) 160, 506
AclWI GGATC 1 cut(s) 1109
AcoI YGGCCR 2 cut(s) 125, 719
AcsI RAATTY 5 cut(s) 120, 227, 341, 938, 980
AcuI CTGAAG 1 cut(s) 825
AdeI CACNNNGTG 1 cut(s) 1247
AfaI GTAC 2 cut(s) 323, 738
AfiI CCNNNNNNNGG 5 cut(s) 123, 768, 793, 1247, 1250
AflIII ACRYGT 1 cut(s) 708
AgsI TTSAA 6 cut(s) 341, 383, 547, 734, 1048, 1292
AjnI CCWGG 4 cut(s) 658, 678, 696, 1243
AluBI AGCT 7 cut(s) 352, 418, 564, 631, 685, 865, 1144
AluI AGCT 7 cut(s) 352, 418, 564, 631, 685, 865, 1144
Alw26I GTCTC 2 cut(s) 65, 597
AlwI GGATC 1 cut(s) 1109
AlwNI CAGNNNCTG 1 cut(s) 497
AoxI GGCC 7 cut(s) 25, 125, 245, 605, 661, 719, 770
ApeKI GCWGC 3 cut(s) 446, 527, 1141
ApoI RAATTY 5 cut(s) 120, 227, 341, 938, 980
AspS9I GGNCC 3 cut(s) 748, 1087, 1350
AsuHPI GGTGA 2 cut(s) 199, 1076
AvaII GGWCC 3 cut(s) 748, 1087, 1350
AxyI CCTNAGG 1 cut(s) 1230
BalI TGGCCA 1 cut(s) 721
BbsI GAAGAC 1 cut(s) 899
BbvI GCAGC 3 cut(s) 433, 514, 1153
BccI CCATC 2 cut(s) 892, 1321
BceAI ACGGC 1 cut(s) 112
BciT130I CCWGG 4 cut(s) 660, 680, 698, 1245
BcoDI GTCTC 2 cut(s) 65, 597
BfaI CTAG 1 cut(s) 44
BfmI CTRYAG 1 cut(s) 774
BglII AGATCT 2 cut(s) 826, 1285
BisI GCNGC 3 cut(s) 447, 528, 1142
BlsI GCNGC 3 cut(s) 448, 529, 1143
Bme1390I CCNGG 4 cut(s) 660, 680, 698, 1245
Bme18I GGWCC 3 cut(s) 748, 1087, 1350
BmgT120I GGNCC 3 cut(s) 748, 1087, 1350
BmiI GGNNCC 5 cut(s) 364, 429, 558, 750, 1227
BmrFI CCNGG 4 cut(s) 660, 680, 698, 1245
BmrI ACTGGG 1 cut(s) 1006
BmsI GCATC 1 cut(s) 153
BmuI ACTGGG 1 cut(s) 1006
BpiI GAAGAC 1 cut(s) 899
BplI GAGNNNNNCTC 2 cut(s) 128, 160
BpuEI CTTGAG 2 cut(s) 254, 1166
BsaAI YACGTR 1 cut(s) 536
BsaI GGTCTC 1 cut(s) 65
BsaJI CCNNGG 5 cut(s) 306, 552, 1060, 1135, 1353
Bsc4I CCNNNNNNNGG 5 cut(s) 123, 768, 793, 1247, 1250
Bse1I ACTGG 1 cut(s) 1001
Bse21I CCTNAGG 1 cut(s) 1230
Bse3DI GCAATG 1 cut(s) 813
BseBI CCWGG 4 cut(s) 660, 680, 698, 1245
BseDI CCNNGG 5 cut(s) 306, 552, 1060, 1135, 1353
BseGI GGATG 1 cut(s) 168
BseLI CCNNNNNNNGG 5 cut(s) 123, 768, 793, 1247, 1250
BseMI GCAATG 1 cut(s) 813
BseMII CTCAG 7 cut(s) 114, 162, 791, 983, 1133, 1221, 1345
BseNI ACTGG 1 cut(s) 1001
BseRI GAGGAG 1 cut(s) 1193
BseX3I CGGCCG 1 cut(s) 125
BseXI GCAGC 3 cut(s) 433, 514, 1153
BseYI CCCAGC 1 cut(s) 751
BsgI GTGCAG 1 cut(s) 513
Bsh1285I CGRYCG 1 cut(s) 128
BshFI GGCC 7 cut(s) 27, 127, 247, 607, 663, 721, 772
BsiEI CGRYCG 1 cut(s) 128
BslI CCNNNNNNNGG 5 cut(s) 123, 768, 793, 1247, 1250
BsmAI GTCTC 2 cut(s) 65, 597
BsnI GGCC 7 cut(s) 27, 127, 247, 607, 663, 721, 772
Bso31I GGTCTC 1 cut(s) 65
Bsp143I GATC 7 cut(s) 205, 264, 327, 643, 826, 1114, 1285
Bsp19I CCATGG 1 cut(s) 1060
BspACI CCGC 2 cut(s) 160, 506
BspANI GGCC 7 cut(s) 27, 127, 247, 607, 663, 721, 772
BspCNI CTCAG 7 cut(s) 113, 163, 792, 982, 1132, 1222, 1344
BspHI TCATGA 1 cut(s) 1273
BspLI GGNNCC 5 cut(s) 364, 429, 558, 750, 1227
BspPI GGATC 1 cut(s) 1109
BspTNI GGTCTC 1 cut(s) 65
BsrBI CCGCTC 1 cut(s) 160
BsrDI GCAATG 1 cut(s) 813
BsrI ACTGG 1 cut(s) 1001
BssECI CCNNGG 5 cut(s) 306, 552, 1060, 1135, 1353
BssMI GATC 7 cut(s) 205, 264, 327, 643, 826, 1114, 1285
BssT1I CCWWGG 3 cut(s) 552, 1060, 1353
Bst2UI CCWGG 4 cut(s) 660, 680, 698, 1245
Bst4CI ACNGT 3 cut(s) 499, 901, 1136
BstBAI YACGTR 1 cut(s) 536
BstC8I GCNNGC 1 cut(s) 70
BstDEI CTNAG 7 cut(s) 100, 171, 800, 969, 1119, 1230, 1331
BstDSI CCRYGG 2 cut(s) 1060, 1135
BstENI CCTNNNNNAGG 2 cut(s) 766, 1248
BstF5I GGATG 1 cut(s) 168
BstKTI GATC 7 cut(s) 208, 267, 330, 646, 829, 1117, 1288
BstMAI GTCTC 2 cut(s) 65, 597
BstMBI GATC 7 cut(s) 205, 264, 327, 643, 826, 1114, 1285
BstMCI CGRYCG 1 cut(s) 128
BstMWI GCNNNNNNNGC 1 cut(s) 476
BstNI CCWGG 4 cut(s) 660, 680, 698, 1245
BstNSI RCATGY 2 cut(s) 712, 1189
BstSCI CCNGG 4 cut(s) 658, 678, 696, 1243
BstSFI CTRYAG 1 cut(s) 774
BstV1I GCAGC 3 cut(s) 433, 514, 1153
BstV2I GAAGAC 1 cut(s) 899
BstX2I RGATCY 2 cut(s) 826, 1285
BstYI RGATCY 2 cut(s) 826, 1285
BstZI CGGCCG 1 cut(s) 125
Bsu36I CCTNAGG 1 cut(s) 1230
BsuRI GGCC 7 cut(s) 27, 127, 247, 607, 663, 721, 772
BtgI CCRYGG 2 cut(s) 1060, 1135
BtsCI GGATG 1 cut(s) 168
BtsIMutI CAGTG 1 cut(s) 897
Cac8I GCNNGC 1 cut(s) 70
CaiI CAGNNNCTG 1 cut(s) 497
CciI TCATGA 1 cut(s) 1273
Cfr13I GGNCC 3 cut(s) 748, 1087, 1350
CsiI ACCWGGT 2 cut(s) 696, 1243
Csp6I GTAC 2 cut(s) 322, 737
CviAII CATG 7 cut(s) 598, 709, 788, 1016, 1061, 1186, 1274
CviQI GTAC 2 cut(s) 322, 737
DdeI CTNAG 7 cut(s) 100, 171, 800, 969, 1119, 1230, 1331
DpnI GATC 7 cut(s) 207, 266, 329, 645, 828, 1116, 1287
DpnII GATC 7 cut(s) 205, 264, 327, 643, 826, 1114, 1285
DraI TTTAAA 1 cut(s) 1174
DraIII CACNNNGTG 1 cut(s) 1247
EaeI YGGCCR 2 cut(s) 125, 719
EagI CGGCCG 1 cut(s) 125
EclXI CGGCCG 1 cut(s) 125
Eco130I CCWWGG 3 cut(s) 552, 1060, 1353
Eco147I AGGCCT 2 cut(s) 607, 772
Eco31I GGTCTC 1 cut(s) 65
Eco47I GGWCC 3 cut(s) 748, 1087, 1350
Eco52I CGGCCG 1 cut(s) 125
Eco57I CTGAAG 1 cut(s) 825
Eco81I CCTNAGG 1 cut(s) 1230
EcoNI CCTNNNNNAGG 2 cut(s) 766, 1248
EcoRII CCWGG 4 cut(s) 658, 678, 696, 1243
EcoT14I CCWWGG 3 cut(s) 552, 1060, 1353
ErhI CCWWGG 3 cut(s) 552, 1060, 1353
FaeI CATG 7 cut(s) 601, 712, 791, 1019, 1064, 1189, 1277
FalI AAGNNNNNCTT 4 cut(s) 553, 585, 816, 848
FatI CATG 7 cut(s) 597, 708, 787, 1015, 1060, 1185, 1273
FauNDI CATATG 1 cut(s) 481
Fnu4HI GCNGC 3 cut(s) 447, 528, 1142
FokI GGATG 1 cut(s) 175
Fsp4HI GCNGC 3 cut(s) 447, 528, 1142
FspBI CTAG 1 cut(s) 44
GluI GCNGC 3 cut(s) 447, 528, 1142
GsaI CCCAGC 1 cut(s) 755
HaeIII GGCC 7 cut(s) 27, 127, 247, 607, 663, 721, 772
Hin1II CATG 7 cut(s) 601, 712, 791, 1019, 1064, 1189, 1277
HincII GTYRAC 1 cut(s) 616
HindII GTYRAC 1 cut(s) 616
HindIII AAGCTT 2 cut(s) 562, 629
HinfI GANTC 6 cut(s) 6, 36, 143, 193, 332, 1081
HphI GGTGA 2 cut(s) 199, 1076
Hpy166II GTNNAC 1 cut(s) 616
Hpy188I TCNGA 7 cut(s) 41, 103, 148, 801, 844, 1122, 1334
Hpy8I GTNNAC 1 cut(s) 616
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 6 cut(s) 385, 406, 787, 1216, 1271, 1286
HpyCH4III ACNGT 3 cut(s) 499, 901, 1136
HpyCH4IV ACGT 1 cut(s) 535
HpyCH4V TGCA 6 cut(s) 270, 290, 449, 517, 530, 1189
HpyF10VI GCNNNNNNNGC 1 cut(s) 476
HpyF3I CTNAG 7 cut(s) 100, 171, 800, 969, 1119, 1230, 1331
HpySE526I ACGT 1 cut(s) 535
Hsp92II CATG 7 cut(s) 601, 712, 791, 1019, 1064, 1189, 1277
Kzo9I GATC 7 cut(s) 205, 264, 327, 643, 826, 1114, 1285
LmnI GCTCC 4 cut(s) 157, 415, 682, 1231
Lsp1109I GCAGC 3 cut(s) 433, 514, 1153
LweI GCATC 1 cut(s) 153
MabI ACCWGGT 2 cut(s) 696, 1243
MaeI CTAG 1 cut(s) 44
MaeII ACGT 1 cut(s) 535
MaeIII GTNAC 1 cut(s) 400
MalI GATC 7 cut(s) 207, 266, 329, 645, 828, 1116, 1287
MbiI CCGCTC 1 cut(s) 160
MboI GATC 7 cut(s) 205, 264, 327, 643, 826, 1114, 1285
MboII GAAGA 5 cut(s) 202, 821, 904, 1141, 1214
MflI RGATCY 2 cut(s) 826, 1285
MlsI TGGCCA 1 cut(s) 721
MluCI AATT 8 cut(s) 120, 227, 300, 341, 435, 938, 980, 1154
MluNI TGGCCA 1 cut(s) 721
MlyI GAGTC 3 cut(s) 137, 341, 1075
MmeI TCCRAC 1 cut(s) 1131
Mox20I TGGCCA 1 cut(s) 721
MscI TGGCCA 1 cut(s) 721
Msp20I TGGCCA 1 cut(s) 721
MspR9I CCNGG 4 cut(s) 660, 680, 698, 1245
MvaI CCWGG 4 cut(s) 660, 680, 698, 1245
MwoI GCNNNNNNNGC 1 cut(s) 476
NcoI CCATGG 1 cut(s) 1060
NdeI CATATG 1 cut(s) 481
NdeII GATC 7 cut(s) 205, 264, 327, 643, 826, 1114, 1285
NlaIII CATG 7 cut(s) 601, 712, 791, 1019, 1064, 1189, 1277
NlaIV GGNNCC 5 cut(s) 364, 429, 558, 750, 1227
NmeAIII GCCGAG 1 cut(s) 331
NspI RCATGY 2 cut(s) 712, 1189
PagI TCATGA 1 cut(s) 1273
PceI AGGCCT 2 cut(s) 607, 772
PciI ACATGT 1 cut(s) 708
PfeI GAWTC 3 cut(s) 6, 36, 193
PflMI CCANNNNNTGG 1 cut(s) 1247
PfoI TCCNGGA 1 cut(s) 678
PkrI GCNGC 3 cut(s) 448, 529, 1143
PleI GAGTC 3 cut(s) 137, 340, 1075
PpsI GAGTC 3 cut(s) 137, 340, 1075
Ppu21I YACGTR 1 cut(s) 536
PscI ACATGT 1 cut(s) 708
PsiI TTATAA 1 cut(s) 1164
Psp6I CCWGG 4 cut(s) 658, 678, 696, 1243
PspFI CCCAGC 1 cut(s) 751
PspGI CCWGG 4 cut(s) 658, 678, 696, 1243
PspN4I GGNNCC 5 cut(s) 364, 429, 558, 750, 1227
PspPI GGNCC 3 cut(s) 748, 1087, 1350
PstNI CAGNNNCTG 1 cut(s) 497
PsuI RGATCY 2 cut(s) 826, 1285
RsaI GTAC 2 cut(s) 323, 738
RsaNI GTAC 2 cut(s) 322, 737
SatI GCNGC 3 cut(s) 447, 528, 1142
Sau3AI GATC 7 cut(s) 205, 264, 327, 643, 826, 1114, 1285
Sau96I GGNCC 3 cut(s) 748, 1087, 1350
SchI GAGTC 3 cut(s) 137, 341, 1075
ScrFI CCNGG 4 cut(s) 660, 680, 698, 1245
SexAI ACCWGGT 2 cut(s) 696, 1243
SfaNI GCATC 1 cut(s) 153
SfcI CTRYAG 1 cut(s) 774
SinI GGWCC 3 cut(s) 748, 1087, 1350
SmlI CTYRAG 2 cut(s) 233, 1145
SmoI CTYRAG 2 cut(s) 233, 1145
Sse9I AATT 8 cut(s) 120, 227, 300, 341, 435, 938, 980, 1154
SseBI AGGCCT 2 cut(s) 607, 772
SsiI CCGC 2 cut(s) 160, 506
SspMI CTAG 1 cut(s) 44
StuI AGGCCT 2 cut(s) 607, 772
StyD4I CCNGG 4 cut(s) 658, 678, 696, 1243
StyI CCWWGG 3 cut(s) 552, 1060, 1353
TaaI ACNGT 3 cut(s) 499, 901, 1136
TaiI ACGT 1 cut(s) 538
TaqI TCGA 2 cut(s) 53, 330
TasI AATT 8 cut(s) 120, 227, 300, 341, 435, 938, 980, 1154
TatI WGTACW 1 cut(s) 321
TfiI GAWTC 3 cut(s) 6, 36, 193
TscAI CASTG 1 cut(s) 904
TseI GCWGC 3 cut(s) 446, 527, 1141
TspDTI ATGAA 6 cut(s) 73, 404, 824, 1215, 1262, 1290
TspRI CASTG 1 cut(s) 904
Van91I CCANNNNNTGG 1 cut(s) 1247
VpaK11BI GGWCC 3 cut(s) 748, 1087, 1350
XagI CCTNNNNNAGG 2 cut(s) 766, 1248
XapI RAATTY 5 cut(s) 120, 227, 341, 938, 980
XceI RCATGY 2 cut(s) 712, 1189
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.