Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0009023

Physical Location & Seq

Genomic Coordinates Reverse (-)

24316144 .. 24320875

Gene Structure 4732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1120700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1620 bp

ATGGGGTTCTTCAGTACGATTTTTGGGCTCTGCGGATTCGGACTCGGGATTTCAATTGGCCTCGTAGCTGGATATTTCCTGTTCATCTATGTCCAATCTTCTGATGTTCAGAATCCTGAAATTCGTCCCTTGGTTGATCAAGATACGGAGACATTGCAGCGTATGCTGCCCGAGATACCTCAGTGGGTGAAAAATCCAGACTACGATCGTCTTGACTGGCTAAACAGATTTCTTGAATATATGTGGCCGTATCTGGACAAGGCAATCTGCAAGACTGCAAAAGAAATTGCAAAGCCCATAATTGCTAAGGAAATTCCAAATTACAAGATTGAATCTGTTGAGTTTGAAACACTGACTTTAGGTTCCTTACCACCGACTTTCCAAGGCATGAAAGTTTATGTCACTGATGAGAAAGAGTTGATTATGGAACCCTCCATAAAATGGGCTGGAAACCCTAATGTCCTTGTTGCTGCTAAAGCATTTGGAATGAAAGCAACCGTTCAGGTACTGGATTTACAAGTTTTTGTTGCACCACGTATCACTTTGAAGCCGTTGGTTCCAAGCTTTCCTTGTTTCGCACAAATAAACGTGTCTCTCATGGATAAGCCTTATGTTGATTTCGGATTAAAGCTTTTGGGCGCTGATCTTATGTCAATACCTGGCCTTTATAGATTCGTCCAGGAGCTAATCAAGGATCAGGTTGCTAACATGTATCTGTGGCCCAAAACTCTCGAAGTGCCAATAATGGACCCAGCAAAAGCCTTTAACCGGCCTGTAGGAATGCTCCATGTGAAGGTTCTGAGGGCAATGAAGTTGAAAAAGAAGGATCTTCTTGGTGCTTCAGACCCTTATGTGAAATTAAAGCTCACCGAGAACAATATGCCTTCAAAGAAGACCACTGTCAAGCACAAGAACCTGAATCCTGAATGGAATGAGGAATTTAACTTGGTTGTTAAAGATCCAGAGTCTCAGGCTTTAGAACTTCTTGTTTACGACTGGGAGAAGGTGGGCAAACATGATAAAATGGGTATGAATGTAGTACCTATGAAAGATCTACCCCACAATGAGCCAAAAGTTATGACTCTCGACCTCCTTAAAAACATGGACTTGAATGATGCCACAAATGAGAAGCAGCGAGGGCAGCTTGAAGTGGAATTGCATTATAAACCCTTCAAAGAGGAGGACATGCAAAAAGGATTTGATGAAACACTGACAGTACAGAAAGCTCCTGAGGGAACGCCACCCGGTGGAGGTTTGCTTGTTGTTGTAGTTCATGAAGGTCAAGATCTTGAAGGAAAGCACCACTGTAATCCGTCTGTAAGACTTATTTTCAGAGGGGAGGAAAAGAGAACCAAGGTACTAAAGAAAAGCAGAGATCCAAGATGGGCAGAGGATTTTCAGTTCATGTGTGAGGAACCTCCTACTAATGACAAACTACATGTGGAGGTTGTCAGCACCTCGTCGAGGATGGGCCTTCTGCATGGAAAGGAATCTCTGGGATATGTTCAAATCACTCTTACGGATGTCGTTTCAAACAAGCGAATCAATCAGAAATACCATCTTATAGACTCGAAGAATGGTCAAGTGCAGATTGAGCTGCAATGGAGAACTGTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 SMP_LBD

Protein Analysis

540

Amino Acids

61.54

Weight (kDa)

6.46

Isoelectric Point (pI)

32.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMP_LBD	PF17047	67 - 248	1.4e-18	Synaptotagmin-like mitochondrial-lipid-binding domain
C2	PF00168	260 - 361	1.6e-25	C2 domain
C2	PF00168	419 - 521	1.8e-14	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20990 AT2G20990 AT2G20990 AT2G21010
fragaria_vesca	FvH4_2g01300 FvH4_2g01300
malus_domestica	MD05G1120700.v1.1
prunus_persica	Prupe.8G164600_v2.0.a1 Prupe.8G164600_v2.0.a1 Prupe.8G164600_v2.0.a1
pyrus_communis	pycom05g11460
rosa_chinensis	RchiOBHm_Chr6g0252191
rosa_laevigata	RLG00000015404
rosa_multiflora	Rmu_sc0002522.1_g000001
rosa_roxburghii	Rroxscaffold_7G00216260
rosa_rugosa	Rorug05G0505900.1
rosa_samantha	Rh6AG019800 Rh6BG015200 Rh6CG012200 Rh6DG013500
rosa_wichuraiana	Rw6G000080 Rw6G001620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1164
AccB7I	CCANNNNNTGG	2 cut(s)	441, 1247
AciI	CCGC	1 cut(s)	33
AclWI	GGATC	4 cut(s)	702, 834, 953, 1370
AcoI	YGGCCR	1 cut(s)	245
AcsI	RAATTY	3 cut(s)	120, 312, 938
AcuI	CTGAAG	1 cut(s)	825
AdeI	CACNNNGTG	1 cut(s)	1247
AfaI	GTAC	5 cut(s)	16, 507, 1041, 1218, 1359
AfiI	CCNNNNNNNGG	6 cut(s)	441, 768, 793, 1247, 1250, 1464
AflIII	ACRYGT	3 cut(s)	588, 708, 1438
AjnI	CCWGG	2 cut(s)	658, 678
AloI	GAACNNNNNNTCC	2 cut(s)	1385, 1417
AluBI	AGCT	8 cut(s)	68, 564, 631, 685, 865, 1144, 1226, 1597
AluI	AGCT	8 cut(s)	68, 564, 631, 685, 865, 1144, 1226, 1597
Alw26I	GTCTC	3 cut(s)	143, 597, 972
AlwI	GGATC	4 cut(s)	702, 834, 953, 1370
AlwNI	CAGNNNCTG	1 cut(s)	508
Ama87I	CYCGRG	2 cut(s)	44, 170
AoxI	GGCC	6 cut(s)	58, 245, 661, 719, 770, 1471
ApeKI	GCWGC	6 cut(s)	157, 166, 470, 1132, 1141, 1597
ApoI	RAATTY	3 cut(s)	120, 312, 938
AspLEI	GCGC	1 cut(s)	641
AspS9I	GGNCC	3 cut(s)	720, 748, 1471
AsuC2I	CCSGG	1 cut(s)	1245
AsuHPI	GGTGA	2 cut(s)	199, 859
AvaI	CYCGRG	2 cut(s)	44, 170
AvaII	GGWCC	1 cut(s)	748
AxyI	CCTNAGG	1 cut(s)	1230
BaeI	ACNNNNGTAYC	2 cut(s)	167, 200
BanII	GRGCYC	1 cut(s)	30
BbsI	GAAGAC	1 cut(s)	899
BbvI	GCAGC	6 cut(s)	153, 169, 457, 1144, 1153, 1584
BccI	CCATC	3 cut(s)	1377, 1462, 1566
BceAI	ACGGC	2 cut(s)	232, 535
BciT130I	CCWGG	2 cut(s)	660, 680
BclI	TGATCA	1 cut(s)	136
BcnI	CCSGG	1 cut(s)	1245
BcoDI	GTCTC	3 cut(s)	143, 597, 972
BfmI	CTRYAG	1 cut(s)	774
BfoI	RGCGCY	1 cut(s)	642
BglII	AGATCT	2 cut(s)	1051, 1285
BisI	GCNGC	6 cut(s)	158, 167, 471, 1133, 1142, 1598
BlsI	GCNGC	6 cut(s)	159, 168, 472, 1134, 1143, 1599
Bme1390I	CCNGG	3 cut(s)	660, 680, 1245
Bme18I	GGWCC	1 cut(s)	748
BmeT110I	CYCGRG	2 cut(s)	44, 170
BmgT120I	GGNCC	3 cut(s)	720, 748, 1471
BmiI	GGNNCC	5 cut(s)	364, 429, 558, 750, 1416
BmrFI	CCNGG	3 cut(s)	660, 680, 1245
BmrI	ACTGGG	1 cut(s)	1006
BmsI	GCATC	1 cut(s)	1105
BmuI	ACTGGG	1 cut(s)	1006
BoxI	GACNNNNGTC	1 cut(s)	899
BpiI	GAAGAC	1 cut(s)	899
Bpu10I	CCTNAGC	1 cut(s)	306
BpuMI	CCSGG	1 cut(s)	1245
BsaAI	YACGTR	1 cut(s)	536
BsaJI	CCNNGG	3 cut(s)	129, 382, 1353
Bsc4I	CCNNNNNNNGG	6 cut(s)	441, 768, 793, 1247, 1250, 1464
Bse118I	RCCGGY	1 cut(s)	768
Bse1I	ACTGG	3 cut(s)	221, 513, 1001
Bse21I	CCTNAGG	1 cut(s)	1230
Bse3DI	GCAATG	3 cut(s)	152, 813, 1607
BseBI	CCWGG	2 cut(s)	660, 680
BseDI	CCNNGG	3 cut(s)	129, 382, 1353
BseGI	GGATG	2 cut(s)	1473, 1528
BseLI	CCNNNNNNNGG	6 cut(s)	441, 768, 793, 1247, 1250, 1464
BseMI	GCAATG	3 cut(s)	152, 813, 1607
BseMII	CTCAG	4 cut(s)	194, 791, 983, 1221
BseNI	ACTGG	3 cut(s)	221, 513, 1001
BseRI	GAGGAG	1 cut(s)	1193
BseXI	GCAGC	6 cut(s)	153, 169, 457, 1144, 1153, 1584
BseYI	CCCAGC	1 cut(s)	751
BsgI	GTGCAG	1 cut(s)	1607
Bsh1285I	CGRYCG	1 cut(s)	208
BshFI	GGCC	6 cut(s)	60, 247, 663, 721, 772, 1473
BsiEI	CGRYCG	1 cut(s)	208
BsiHKCI	CYCGRG	2 cut(s)	44, 170
BsiSI	CCGG	2 cut(s)	769, 1245
BslFI	GGGAC	1 cut(s)	111
BslI	CCNNNNNNNGG	6 cut(s)	441, 768, 793, 1247, 1250, 1464
BsmAI	GTCTC	3 cut(s)	143, 597, 972
BsmFI	GGGAC	1 cut(s)	111
BsmI	GAATGC	1 cut(s)	786
BsnI	GGCC	6 cut(s)	60, 247, 663, 721, 772, 1473
BsoBI	CYCGRG	2 cut(s)	44, 170
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	9 cut(s)	136, 205, 643, 694, 826, 958, 1051, 1285, 1375
BspACI	CCGC	1 cut(s)	33
BspANI	GGCC	6 cut(s)	60, 247, 663, 721, 772, 1473
BspCNI	CTCAG	4 cut(s)	193, 792, 982, 1222
BspHI	TCATGA	1 cut(s)	1273
BspLI	GGNNCC	5 cut(s)	364, 429, 558, 750, 1416
BspPI	GGATC	4 cut(s)	702, 834, 953, 1370
BsrDI	GCAATG	3 cut(s)	152, 813, 1607
BsrFI	RCCGGY	1 cut(s)	768
BsrI	ACTGG	3 cut(s)	221, 513, 1001
BssAI	RCCGGY	1 cut(s)	768
BssECI	CCNNGG	3 cut(s)	129, 382, 1353
BssMI	GATC	9 cut(s)	136, 205, 643, 694, 826, 958, 1051, 1285, 1375
BssT1I	CCWWGG	3 cut(s)	129, 382, 1353
Bst2UI	CCWGG	2 cut(s)	660, 680
Bst4CI	ACNGT	5 cut(s)	499, 901, 1216, 1307, 1612
BstAPI	GCANNNNNTGC	1 cut(s)	163
BstBAI	YACGTR	1 cut(s)	536
BstDEI	CTNAG	5 cut(s)	180, 306, 800, 969, 1230
BstENI	CCTNNNNNAGG	1 cut(s)	1462
BstF5I	GGATG	2 cut(s)	1473, 1528
BstH2I	RGCGCY	1 cut(s)	642
BstHHI	GCGC	1 cut(s)	641
BstKTI	GATC	9 cut(s)	139, 208, 646, 697, 829, 961, 1054, 1288, 1378
BstMAI	GTCTC	3 cut(s)	143, 597, 972
BstMBI	GATC	9 cut(s)	136, 205, 643, 694, 826, 958, 1051, 1285, 1375
BstMCI	CGRYCG	1 cut(s)	208
BstMWI	GCNNNNNNNGC	6 cut(s)	163, 166, 476, 1138, 1141, 1594
BstNI	CCWGG	2 cut(s)	660, 680
BstNSI	RCATGY	3 cut(s)	712, 1189, 1442
BstPAI	GACNNNNGTC	1 cut(s)	899
BstSCI	CCNGG	3 cut(s)	658, 678, 1243
BstSFI	CTRYAG	1 cut(s)	774
BstV1I	GCAGC	6 cut(s)	153, 169, 457, 1144, 1153, 1584
BstV2I	GAAGAC	1 cut(s)	899
BstX2I	RGATCY	5 cut(s)	826, 958, 1051, 1285, 1375
BstYI	RGATCY	5 cut(s)	826, 958, 1051, 1285, 1375
Bsu36I	CCTNAGG	1 cut(s)	1230
BsuRI	GGCC	6 cut(s)	60, 247, 663, 721, 772, 1473
BtsCI	GGATG	2 cut(s)	1473, 1528
BtsIMutI	CAGTG	6 cut(s)	188, 350, 402, 897, 1208, 1303
CaiI	CAGNNNCTG	1 cut(s)	508
CciI	TCATGA	1 cut(s)	1273
CfoI	GCGC	1 cut(s)	641
Cfr10I	RCCGGY	1 cut(s)	768
Cfr13I	GGNCC	3 cut(s)	720, 748, 1471
Csp6I	GTAC	5 cut(s)	15, 506, 1040, 1217, 1358
CviQI	GTAC	5 cut(s)	15, 506, 1040, 1217, 1358
DdeI	CTNAG	5 cut(s)	180, 306, 800, 969, 1230
DpnI	GATC	9 cut(s)	138, 207, 645, 696, 828, 960, 1053, 1287, 1377
DpnII	GATC	9 cut(s)	136, 205, 643, 694, 826, 958, 1051, 1285, 1375
DraIII	CACNNNGTG	1 cut(s)	1247
EaeI	YGGCCR	1 cut(s)	245
Eco130I	CCWWGG	3 cut(s)	129, 382, 1353
Eco24I	GRGCYC	1 cut(s)	30
Eco47I	GGWCC	1 cut(s)	748
Eco57I	CTGAAG	1 cut(s)	825
Eco81I	CCTNAGG	1 cut(s)	1230
Eco88I	CYCGRG	2 cut(s)	44, 170
EcoNI	CCTNNNNNAGG	1 cut(s)	1462
EcoRII	CCWGG	2 cut(s)	658, 678
EcoT14I	CCWWGG	3 cut(s)	129, 382, 1353
EcoT38I	GRGCYC	1 cut(s)	30
ErhI	CCWWGG	3 cut(s)	129, 382, 1353
FalI	AAGNNNNNCTT	2 cut(s)	553, 585
FaqI	GGGAC	1 cut(s)	111
FbaI	TGATCA	1 cut(s)	136
Fnu4HI	GCNGC	6 cut(s)	158, 167, 471, 1133, 1142, 1598
FokI	GGATG	2 cut(s)	1480, 1535
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	6 cut(s)	158, 167, 471, 1133, 1142, 1598
GlaI	GCGC	1 cut(s)	640
GluI	GCNGC	6 cut(s)	158, 167, 471, 1133, 1142, 1598
GsaI	CCCAGC	1 cut(s)	755
HaeII	RGCGCY	1 cut(s)	642
HaeIII	GGCC	6 cut(s)	60, 247, 663, 721, 772, 1473
HapII	CCGG	2 cut(s)	769, 1245
HhaI	GCGC	1 cut(s)	641
Hin6I	GCGC	1 cut(s)	639
HinP1I	GCGC	1 cut(s)	639
HindIII	AAGCTT	2 cut(s)	562, 629
HpaII	CCGG	2 cut(s)	769, 1245
HphI	GGTGA	2 cut(s)	199, 859
Hpy166II	GTNNAC	1 cut(s)	991
Hpy188I	TCNGA	8 cut(s)	41, 103, 111, 623, 801, 844, 1334, 1551
Hpy8I	GTNNAC	1 cut(s)	991
Hpy99I	CGWCG	1 cut(s)	1465
HpyAV	CCTTC	8 cut(s)	787, 817, 894, 997, 1180, 1271, 1286, 1484
HpyCH4III	ACNGT	5 cut(s)	499, 901, 1216, 1307, 1612
HpyCH4IV	ACGT	2 cut(s)	535, 588
HpyF10VI	GCNNNNNNNGC	6 cut(s)	163, 166, 476, 1138, 1141, 1594
HpyF3I	CTNAG	5 cut(s)	180, 306, 800, 969, 1230
HpySE526I	ACGT	2 cut(s)	535, 588
HspAI	GCGC	1 cut(s)	639
Ksp22I	TGATCA	1 cut(s)	136
Kzo9I	GATC	9 cut(s)	136, 205, 643, 694, 826, 958, 1051, 1285, 1375
LmnI	GCTCC	3 cut(s)	682, 789, 1231
Lsp1109I	GCAGC	6 cut(s)	153, 169, 457, 1144, 1153, 1584
LweI	GCATC	1 cut(s)	1105
MaeII	ACGT	2 cut(s)	535, 588
MaeIII	GTNAC	1 cut(s)	400
MalI	GATC	9 cut(s)	138, 207, 645, 696, 828, 960, 1053, 1287, 1377
MboI	GATC	9 cut(s)	136, 205, 643, 694, 826, 958, 1051, 1285, 1375
MboII	GAAGA	4 cut(s)	90, 821, 904, 1585
MfeI	CAATTG	1 cut(s)	54
MflI	RGATCY	5 cut(s)	826, 958, 1051, 1285, 1375
MhlI	GDGCHC	1 cut(s)	30
MluCI	AATT	9 cut(s)	54, 120, 285, 300, 312, 319, 857, 938, 1154
MlyI	GAGTC	4 cut(s)	36, 974, 1075, 1562
MseI	TTAA	6 cut(s)	626, 765, 860, 942, 954, 1095
MspI	CCGG	2 cut(s)	769, 1245
MspR9I	CCNGG	3 cut(s)	660, 680, 1245
MunI	CAATTG	1 cut(s)	54
Mva1269I	GAATGC	1 cut(s)	786
MvaI	CCWGG	2 cut(s)	660, 680
MwoI	GCNNNNNNNGC	6 cut(s)	163, 166, 476, 1138, 1141, 1594
NciI	CCSGG	1 cut(s)	1245
NdeII	GATC	9 cut(s)	136, 205, 643, 694, 826, 958, 1051, 1285, 1375
NlaIV	GGNNCC	5 cut(s)	364, 429, 558, 750, 1416
NmuCI	GTSAC	1 cut(s)	400
NspI	RCATGY	3 cut(s)	712, 1189, 1442
PagI	TCATGA	1 cut(s)	1273
PciI	ACATGT	2 cut(s)	708, 1438
PctI	GAATGC	1 cut(s)	786
PfeI	GAWTC	7 cut(s)	36, 112, 332, 672, 919, 1490, 1542
PflMI	CCANNNNNTGG	2 cut(s)	441, 1247
PfoI	TCCNGGA	1 cut(s)	678
PkrI	GCNGC	6 cut(s)	159, 168, 472, 1134, 1143, 1599
Ple19I	CGATCG	1 cut(s)	208
PleI	GAGTC	4 cut(s)	36, 973, 1075, 1562
PpsI	GAGTC	4 cut(s)	36, 973, 1075, 1562
Ppu21I	YACGTR	1 cut(s)	536
PscI	ACATGT	2 cut(s)	708, 1438
PshAI	GACNNNNGTC	1 cut(s)	899
PsiI	TTATAA	1 cut(s)	1164
Psp6I	CCWGG	2 cut(s)	658, 678
PspFI	CCCAGC	1 cut(s)	751
PspGI	CCWGG	2 cut(s)	658, 678
PspN4I	GGNNCC	5 cut(s)	364, 429, 558, 750, 1416
PspPI	GGNCC	3 cut(s)	720, 748, 1471
PstNI	CAGNNNCTG	1 cut(s)	508
PsuI	RGATCY	5 cut(s)	826, 958, 1051, 1285, 1375
PvuI	CGATCG	1 cut(s)	208
RsaI	GTAC	5 cut(s)	16, 507, 1041, 1218, 1359
RsaNI	GTAC	5 cut(s)	15, 506, 1040, 1217, 1358
SaqAI	TTAA	6 cut(s)	626, 765, 860, 942, 954, 1095
SatI	GCNGC	6 cut(s)	158, 167, 471, 1133, 1142, 1598
Sau3AI	GATC	9 cut(s)	136, 205, 643, 694, 826, 958, 1051, 1285, 1375
Sau96I	GGNCC	3 cut(s)	720, 748, 1471
SchI	GAGTC	4 cut(s)	36, 974, 1075, 1562
ScrFI	CCNGG	3 cut(s)	660, 680, 1245
SduI	GDGCHC	1 cut(s)	30
SfaNI	GCATC	1 cut(s)	1105
SfcI	CTRYAG	1 cut(s)	774
SinI	GGWCC	1 cut(s)	748
Sse9I	AATT	9 cut(s)	54, 120, 285, 300, 312, 319, 857, 938, 1154
SsiI	CCGC	1 cut(s)	33
StyD4I	CCNGG	3 cut(s)	658, 678, 1243
StyI	CCWWGG	3 cut(s)	129, 382, 1353
TaaI	ACNGT	5 cut(s)	499, 901, 1216, 1307, 1612
TaiI	ACGT	2 cut(s)	538, 591
TaqI	TCGA	4 cut(s)	732, 1086, 1463, 1571
TasI	AATT	9 cut(s)	54, 120, 285, 300, 312, 319, 857, 938, 1154
TatI	WGTACW	1 cut(s)	1216
TfiI	GAWTC	7 cut(s)	36, 112, 332, 672, 919, 1490, 1542
Tru1I	TTAA	6 cut(s)	626, 765, 860, 942, 954, 1095
Tru9I	TTAA	6 cut(s)	626, 765, 860, 942, 954, 1095
TscAI	CASTG	6 cut(s)	188, 357, 409, 904, 1215, 1310
TseFI	GTSAC	1 cut(s)	400
TseI	GCWGC	6 cut(s)	157, 166, 470, 1132, 1141, 1597
Tsp45I	GTSAC	1 cut(s)	400
TspGWI	ACGGA	3 cut(s)	161, 1302, 1535
TspRI	CASTG	6 cut(s)	188, 357, 409, 904, 1215, 1310
Van91I	CCANNNNNTGG	2 cut(s)	441, 1247
VpaK11BI	GGWCC	1 cut(s)	748
XagI	CCTNNNNNAGG	1 cut(s)	1462
XapI	RAATTY	3 cut(s)	120, 312, 938
XceI	RCATGY	3 cut(s)	712, 1189, 1442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.