Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0009023

Physical Location & Seq

Genomic Coordinates Forward (+)

2180587 .. 2187039

Gene Structure 6453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG015200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1620 bp

ATGGGATTCTTCAGCACCATTTTTGGCCTCTTTGGATTCGGACTAGGGATTTCGATTGGTCTCGTCGCTGGCTATTTCCTTTTCATCTATGTCCAATCCTCAGATGTTGAGAACCCTGAAATTCAGCCGTTGGTTGAGCAAGACTCCGAAACTTTGGATCGGATGCTTCCTGAGATACCTCTTTGGGTGAAGAATCCAGACTACGATCGCGTTGATTGGCTAAACAAATTTCTTGAGTATATGTGGCCTTATCTTGATAAGGCGATCTGCAAGACTGCTAAAGATATTGCAAAGCCCATTATTGCCGAGGAAATACCGAAGTACAAGATCGAGTCTGTTGAATTTGAGAAGCTGACTTTAGGTTCCTTACCACCAACTTTTCAAGGTATGAAGGTTTATGTAACTGATGAGAAGGAGCTGATTATGGAACCCTCAATTAAATGGGCTGCAAATCCTAATGTCCTTCTTGCTGTTAAAGCATATGGAATGACAGCAACTGTTCAGGCGGTTGATGTGCAAGTTTTTGCTGCACCACGTATTACTTTGAAGCCCTTGGTTCCAAGCTTTCCTTGTTTTGCCCAAATCAATGTGTCTCTCATGGACAGGCCTTATATTGACTTTGGATTAAAGCTTATAGGCGTTGATCTTATGTCAATACCTGGCCTTTACAGATTTGTCCAGGACCTTATCAAAGACCAGGTTGCTAACATGTATCTCTGGCCAAAAACTCTTGAAGTACCGATAATGGACCCAGCAAAAGCCTTTAACAGGCCTGTAGGACTTCTCCATGTGAAGGTTCTGAGGGCAATGAAGTTAAGAAAGAAAGATCTTCTTGGTGCTTCAGACCCTTATGTAAAACTAAAGCTCACAGAGAGCAATATGCCATCAAAGAAGACCACTGTTAAGCACAAGAACCTGAACCCTGAATGGAATGAGGAATTTAATATGGTTGTCAAAGACCCACAATCTCAGGCTTTAGAATTTTTAGTTTATGACTGGGATAAGGTGGGAAAACATGAGAAAATGGGTATCAATGTAATACCTTTGAAAGACCTCCCCCATAATGAGCCAAAAGTTTTGACTCTGGACCTCCTTAAAACTATGGACTTAAATGATCCTCAGAATGAGAAGAACCGTGGGCAGCTTGAGTTGGAATTGACTTATAAACCCTTTAAAGAGGAGGACATGCAAAAAGGGTATGAAGAAACACAGACATTAGAGAAGGCTCCTGAAGGAACGCCACCTGGTGGAGGTTTGCTTGTTGTCATAGTTCATGAAGGTCAAGATCTTGAAGGAAAGCACCATTGTAATCCATCTGTGCGACTTATTCTCAGAGGGGAGGAAAGAAGGACCAAGCACCTAAAGAAGAGTAGAGATCCAAGATGGGAAGAAGAGTTTAAATTTGTGCTTGAAGAACCTCCCACTAAAGACAAACTACATGTAGAGGTTGTCAGTACCTCATCAAAATTGGGCCTGCTGCATGGAAAGGAATCTCTGGGCTATGTCCAAATCAGTCTTTCTGACGTCATTTCCAACAGACGAATTAACCAGAAGTACCATCTGATAGACTCGAAGAATGGACAGGTCCAGCTAGAGCTGCAATGGAGAACTGCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 SMP_LBD

Protein Analysis

539

Amino Acids

61.64

Weight (kDa)

6.09

Isoelectric Point (pI)

34.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMP_LBD	PF17047	67 - 248	2.8e-19	Synaptotagmin-like mitochondrial-lipid-binding domain
C2	PF00168	260 - 359	7.7e-26	C2 domain
C2	PF00168	419 - 521	2.5e-14	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20990 AT2G20990 AT2G20990 AT2G21010
fragaria_vesca	FvH4_2g01300 FvH4_2g01300
malus_domestica	MD05G1120700.v1.1
prunus_persica	Prupe.8G164600_v2.0.a1 Prupe.8G164600_v2.0.a1 Prupe.8G164600_v2.0.a1
pyrus_communis	pycom05g11460
rosa_chinensis	RchiOBHm_Chr6g0252191
rosa_laevigata	RLG00000015404
rosa_multiflora	Rmu_sc0002522.1_g000001
rosa_roxburghii	Rroxscaffold_7G00216260
rosa_rugosa	Rorug05G0505900.1
rosa_samantha	Rh6AG019800 Rh6BG015200 Rh6CG012200 Rh6DG013500
rosa_wichuraiana	Rw6G000080 Rw6G001620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1164
AatII	GACGTC	1 cut(s)	1527
AccB7I	CCANNNNNTGG	1 cut(s)	1247
AccII	CGCG	1 cut(s)	210
AciI	CCGC	1 cut(s)	506
AclWI	GGATC	3 cut(s)	165, 1109, 1370
AcoI	YGGCCR	1 cut(s)	719
AcsI	RAATTY	6 cut(s)	120, 227, 341, 938, 980, 1400
AcuI	CTGAAG	2 cut(s)	825, 1251
AcyI	GRCGYC	1 cut(s)	1524
AdeI	CACNNNGTG	1 cut(s)	1247
AfaI	GTAC	4 cut(s)	323, 738, 1456, 1556
AfiI	CCNNNNNNNGG	4 cut(s)	768, 793, 1247, 1250
AflIII	ACRYGT	2 cut(s)	708, 1438
AgsI	TTSAA	7 cut(s)	341, 383, 547, 734, 1048, 1292, 1412
AjnI	CCWGG	4 cut(s)	658, 678, 696, 1243
AluBI	AGCT	8 cut(s)	352, 418, 564, 631, 865, 1144, 1591, 1597
AluI	AGCT	8 cut(s)	352, 418, 564, 631, 865, 1144, 1591, 1597
Alw26I	GTCTC	2 cut(s)	65, 597
AlwI	GGATC	3 cut(s)	165, 1109, 1370
AlwNI	CAGNNNCTG	1 cut(s)	497
AoxI	GGCC	7 cut(s)	25, 245, 605, 661, 719, 770, 1471
ApeKI	GCWGC	5 cut(s)	446, 527, 1141, 1477, 1597
ApoI	RAATTY	6 cut(s)	120, 227, 341, 938, 980, 1400
AspS9I	GGNCC	6 cut(s)	682, 748, 1087, 1350, 1471, 1585
AsuHPI	GGTGA	1 cut(s)	199
AvaII	GGWCC	5 cut(s)	682, 748, 1087, 1350, 1585
BalI	TGGCCA	1 cut(s)	721
BbsI	GAAGAC	1 cut(s)	899
BbvI	GCAGC	5 cut(s)	433, 514, 1153, 1464, 1584
BccI	CCATC	4 cut(s)	892, 1321, 1377, 1566
BceAI	ACGGC	1 cut(s)	112
BciT130I	CCWGG	4 cut(s)	660, 680, 698, 1245
BcoDI	GTCTC	2 cut(s)	65, 597
BfaI	CTAG	2 cut(s)	44, 1592
BfmI	CTRYAG	1 cut(s)	774
BglII	AGATCT	2 cut(s)	826, 1285
BisI	GCNGC	5 cut(s)	447, 528, 1142, 1478, 1598
BlsI	GCNGC	5 cut(s)	448, 529, 1143, 1479, 1599
Bme1390I	CCNGG	4 cut(s)	660, 680, 698, 1245
Bme18I	GGWCC	5 cut(s)	682, 748, 1087, 1350, 1585
BmgT120I	GGNCC	6 cut(s)	682, 748, 1087, 1350, 1471, 1585
BmiI	GGNNCC	5 cut(s)	364, 429, 558, 750, 1227
BmrFI	CCNGG	4 cut(s)	660, 680, 698, 1245
BmrI	ACTGGG	1 cut(s)	1006
BmsI	GCATC	1 cut(s)	153
BmuI	ACTGGG	1 cut(s)	1006
BpiI	GAAGAC	1 cut(s)	899
BplI	GAGNNNNNCTC	2 cut(s)	128, 160
BpuEI	CTTGAG	2 cut(s)	254, 1166
BsaAI	YACGTR	1 cut(s)	536
BsaHI	GRCGYC	1 cut(s)	1524
BsaI	GGTCTC	1 cut(s)	65
BsaJI	CCNNGG	3 cut(s)	306, 552, 1135
Bsc4I	CCNNNNNNNGG	4 cut(s)	768, 793, 1247, 1250
Bse1I	ACTGG	1 cut(s)	1001
Bse3DI	GCAATG	2 cut(s)	813, 1607
BseBI	CCWGG	4 cut(s)	660, 680, 698, 1245
BseDI	CCNNGG	3 cut(s)	306, 552, 1135
BseGI	GGATG	1 cut(s)	168
BseLI	CCNNNNNNNGG	4 cut(s)	768, 793, 1247, 1250
BseMI	GCAATG	2 cut(s)	813, 1607
BseMII	CTCAG	6 cut(s)	114, 162, 791, 983, 1133, 1345
BseNI	ACTGG	1 cut(s)	1001
BseRI	GAGGAG	1 cut(s)	1193
BseXI	GCAGC	5 cut(s)	433, 514, 1153, 1464, 1584
BseYI	CCCAGC	1 cut(s)	751
BsgI	GTGCAG	1 cut(s)	513
Bsh1236I	CGCG	1 cut(s)	210
Bsh1285I	CGRYCG	1 cut(s)	208
BshFI	GGCC	7 cut(s)	27, 247, 607, 663, 721, 772, 1473
BsiEI	CGRYCG	1 cut(s)	208
BslI	CCNNNNNNNGG	4 cut(s)	768, 793, 1247, 1250
BsmAI	GTCTC	2 cut(s)	65, 597
BsnI	GGCC	7 cut(s)	27, 247, 607, 663, 721, 772, 1473
Bso31I	GGTCTC	1 cut(s)	65
Bsp143I	GATC	9 cut(s)	157, 205, 264, 327, 643, 826, 1114, 1285, 1375
BspACI	CCGC	1 cut(s)	506
BspANI	GGCC	7 cut(s)	27, 247, 607, 663, 721, 772, 1473
BspCNI	CTCAG	6 cut(s)	113, 163, 792, 982, 1132, 1344
BspFNI	CGCG	1 cut(s)	210
BspHI	TCATGA	1 cut(s)	1273
BspLI	GGNNCC	5 cut(s)	364, 429, 558, 750, 1227
BspPI	GGATC	3 cut(s)	165, 1109, 1370
BspTNI	GGTCTC	1 cut(s)	65
BsrDI	GCAATG	2 cut(s)	813, 1607
BsrI	ACTGG	1 cut(s)	1001
BssECI	CCNNGG	3 cut(s)	306, 552, 1135
BssMI	GATC	9 cut(s)	157, 205, 264, 327, 643, 826, 1114, 1285, 1375
BssNI	GRCGYC	1 cut(s)	1524
BssT1I	CCWWGG	1 cut(s)	552
Bst2UI	CCWGG	4 cut(s)	660, 680, 698, 1245
Bst4CI	ACNGT	3 cut(s)	499, 901, 1136
Bst6I	CTCTTC	2 cut(s)	1361, 1386
BstACI	GRCGYC	1 cut(s)	1524
BstBAI	YACGTR	1 cut(s)	536
BstC8I	GCNNGC	2 cut(s)	70, 1475
BstDEI	CTNAG	6 cut(s)	100, 171, 800, 969, 1119, 1331
BstDSI	CCRYGG	1 cut(s)	1135
BstENI	CCTNNNNNAGG	2 cut(s)	766, 1248
BstF5I	GGATG	1 cut(s)	168
BstFNI	CGCG	1 cut(s)	210
BstKTI	GATC	9 cut(s)	160, 208, 267, 330, 646, 829, 1117, 1288, 1378
BstMAI	GTCTC	2 cut(s)	65, 597
BstMBI	GATC	9 cut(s)	157, 205, 264, 327, 643, 826, 1114, 1285, 1375
BstMCI	CGRYCG	1 cut(s)	208
BstMWI	GCNNNNNNNGC	2 cut(s)	476, 1597
BstNI	CCWGG	4 cut(s)	660, 680, 698, 1245
BstNSI	RCATGY	3 cut(s)	712, 1189, 1442
BstSCI	CCNGG	4 cut(s)	658, 678, 696, 1243
BstSFI	CTRYAG	1 cut(s)	774
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	5 cut(s)	433, 514, 1153, 1464, 1584
BstV2I	GAAGAC	1 cut(s)	899
BstX2I	RGATCY	3 cut(s)	826, 1285, 1375
BstYI	RGATCY	3 cut(s)	826, 1285, 1375
BsuRI	GGCC	7 cut(s)	27, 247, 607, 663, 721, 772, 1473
BtgI	CCRYGG	1 cut(s)	1135
BtsCI	GGATG	1 cut(s)	168
BtsIMutI	CAGTG	1 cut(s)	897
Cac8I	GCNNGC	2 cut(s)	70, 1475
CaiI	CAGNNNCTG	1 cut(s)	497
CciI	TCATGA	1 cut(s)	1273
Cfr13I	GGNCC	6 cut(s)	682, 748, 1087, 1350, 1471, 1585
CsiI	ACCWGGT	2 cut(s)	696, 1243
Csp6I	GTAC	4 cut(s)	322, 737, 1455, 1555
CviAII	CATG	8 cut(s)	598, 709, 788, 1016, 1186, 1274, 1439, 1481
CviQI	GTAC	4 cut(s)	322, 737, 1455, 1555
DdeI	CTNAG	6 cut(s)	100, 171, 800, 969, 1119, 1331
DpnI	GATC	9 cut(s)	159, 207, 266, 329, 645, 828, 1116, 1287, 1377
DpnII	GATC	9 cut(s)	157, 205, 264, 327, 643, 826, 1114, 1285, 1375
DraI	TTTAAA	2 cut(s)	1174, 1399
DraIII	CACNNNGTG	1 cut(s)	1247
EaeI	YGGCCR	1 cut(s)	719
Eam1104I	CTCTTC	2 cut(s)	1361, 1386
EarI	CTCTTC	2 cut(s)	1361, 1386
Eco130I	CCWWGG	1 cut(s)	552
Eco147I	AGGCCT	2 cut(s)	607, 772
Eco31I	GGTCTC	1 cut(s)	65
Eco47I	GGWCC	5 cut(s)	682, 748, 1087, 1350, 1585
Eco57I	CTGAAG	2 cut(s)	825, 1251
EcoNI	CCTNNNNNAGG	2 cut(s)	766, 1248
EcoO109I	RGGNCCY	1 cut(s)	682
EcoRII	CCWGG	4 cut(s)	658, 678, 696, 1243
EcoT14I	CCWWGG	1 cut(s)	552
ErhI	CCWWGG	1 cut(s)	552
FaeI	CATG	8 cut(s)	601, 712, 791, 1019, 1189, 1277, 1442, 1484
FalI	AAGNNNNNCTT	4 cut(s)	553, 585, 816, 848
FatI	CATG	8 cut(s)	597, 708, 787, 1015, 1185, 1273, 1438, 1480
FauNDI	CATATG	1 cut(s)	481
Fnu4HI	GCNGC	5 cut(s)	447, 528, 1142, 1478, 1598
FokI	GGATG	1 cut(s)	175
Fsp4HI	GCNGC	5 cut(s)	447, 528, 1142, 1478, 1598
FspBI	CTAG	2 cut(s)	44, 1592
GluI	GCNGC	5 cut(s)	447, 528, 1142, 1478, 1598
GsaI	CCCAGC	1 cut(s)	755
HaeIII	GGCC	7 cut(s)	27, 247, 607, 663, 721, 772, 1473
Hin1I	GRCGYC	1 cut(s)	1524
Hin1II	CATG	8 cut(s)	601, 712, 791, 1019, 1189, 1277, 1442, 1484
HindIII	AAGCTT	2 cut(s)	562, 629
HinfI	GANTC	8 cut(s)	6, 36, 143, 193, 332, 1081, 1490, 1568
HphI	GGTGA	1 cut(s)	199
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	9 cut(s)	385, 406, 473, 787, 1216, 1226, 1271, 1286, 1341
HpyCH4III	ACNGT	3 cut(s)	499, 901, 1136
HpyCH4IV	ACGT	2 cut(s)	535, 1524
HpyCH4V	TGCA	8 cut(s)	270, 290, 449, 517, 530, 1189, 1480, 1600
HpyF10VI	GCNNNNNNNGC	2 cut(s)	476, 1597
HpyF3I	CTNAG	6 cut(s)	100, 171, 800, 969, 1119, 1331
HpySE526I	ACGT	2 cut(s)	535, 1524
Hsp92I	GRCGYC	1 cut(s)	1524
Hsp92II	CATG	8 cut(s)	601, 712, 791, 1019, 1189, 1277, 1442, 1484
Kzo9I	GATC	9 cut(s)	157, 205, 264, 327, 643, 826, 1114, 1285, 1375
LmnI	GCTCC	2 cut(s)	415, 1231
Lsp1109I	GCAGC	5 cut(s)	433, 514, 1153, 1464, 1584
LweI	GCATC	1 cut(s)	153
MabI	ACCWGGT	2 cut(s)	696, 1243
MaeI	CTAG	2 cut(s)	44, 1592
MaeII	ACGT	2 cut(s)	535, 1524
MaeIII	GTNAC	1 cut(s)	400
MalI	GATC	9 cut(s)	159, 207, 266, 329, 645, 828, 1116, 1287, 1377
MboI	GATC	9 cut(s)	157, 205, 264, 327, 643, 826, 1114, 1285, 1375
MflI	RGATCY	3 cut(s)	826, 1285, 1375
MlsI	TGGCCA	1 cut(s)	721
MluNI	TGGCCA	1 cut(s)	721
MlyI	GAGTC	4 cut(s)	137, 341, 1075, 1562
MmeI	TCCRAC	2 cut(s)	1131, 1557
Mox20I	TGGCCA	1 cut(s)	721
MscI	TGGCCA	1 cut(s)	721
Msp20I	TGGCCA	1 cut(s)	721
MspR9I	CCNGG	4 cut(s)	660, 680, 698, 1245
MvaI	CCWGG	4 cut(s)	660, 680, 698, 1245
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	2 cut(s)	476, 1597
NdeI	CATATG	1 cut(s)	481
NdeII	GATC	9 cut(s)	157, 205, 264, 327, 643, 826, 1114, 1285, 1375
NlaIII	CATG	8 cut(s)	601, 712, 791, 1019, 1189, 1277, 1442, 1484
NlaIV	GGNNCC	5 cut(s)	364, 429, 558, 750, 1227
NmeAIII	GCCGAG	1 cut(s)	331
NspI	RCATGY	3 cut(s)	712, 1189, 1442
PagI	TCATGA	1 cut(s)	1273
PceI	AGGCCT	2 cut(s)	607, 772
PciI	ACATGT	2 cut(s)	708, 1438
PfeI	GAWTC	4 cut(s)	6, 36, 193, 1490
PflMI	CCANNNNNTGG	1 cut(s)	1247
PfoI	TCCNGGA	1 cut(s)	678
PkrI	GCNGC	5 cut(s)	448, 529, 1143, 1479, 1599
Ple19I	CGATCG	1 cut(s)	208
PleI	GAGTC	4 cut(s)	137, 340, 1075, 1562
PpsI	GAGTC	4 cut(s)	137, 340, 1075, 1562
Ppu21I	YACGTR	1 cut(s)	536
PpuMI	RGGWCCY	1 cut(s)	682
PscI	ACATGT	2 cut(s)	708, 1438
PsiI	TTATAA	1 cut(s)	1164
Psp5II	RGGWCCY	1 cut(s)	682
Psp6I	CCWGG	4 cut(s)	658, 678, 696, 1243
PspFI	CCCAGC	1 cut(s)	751
PspGI	CCWGG	4 cut(s)	658, 678, 696, 1243
PspN4I	GGNNCC	5 cut(s)	364, 429, 558, 750, 1227
PspPI	GGNCC	6 cut(s)	682, 748, 1087, 1350, 1471, 1585
PspPPI	RGGWCCY	1 cut(s)	682
PstNI	CAGNNNCTG	1 cut(s)	497
PsuI	RGATCY	3 cut(s)	826, 1285, 1375
PvuI	CGATCG	1 cut(s)	208
RsaI	GTAC	4 cut(s)	323, 738, 1456, 1556
RsaNI	GTAC	4 cut(s)	322, 737, 1455, 1555
SatI	GCNGC	5 cut(s)	447, 528, 1142, 1478, 1598
Sau3AI	GATC	9 cut(s)	157, 205, 264, 327, 643, 826, 1114, 1285, 1375
Sau96I	GGNCC	6 cut(s)	682, 748, 1087, 1350, 1471, 1585
SchI	GAGTC	4 cut(s)	137, 341, 1075, 1562
ScrFI	CCNGG	4 cut(s)	660, 680, 698, 1245
SexAI	ACCWGGT	2 cut(s)	696, 1243
SfaNI	GCATC	1 cut(s)	153
SfcI	CTRYAG	1 cut(s)	774
SinI	GGWCC	5 cut(s)	682, 748, 1087, 1350, 1585
SmlI	CTYRAG	2 cut(s)	233, 1145
SmoI	CTYRAG	2 cut(s)	233, 1145
SseBI	AGGCCT	2 cut(s)	607, 772
SsiI	CCGC	1 cut(s)	506
SspMI	CTAG	2 cut(s)	44, 1592
StuI	AGGCCT	2 cut(s)	607, 772
StyD4I	CCNGG	4 cut(s)	658, 678, 696, 1243
StyI	CCWWGG	1 cut(s)	552
TaaI	ACNGT	3 cut(s)	499, 901, 1136
TaiI	ACGT	2 cut(s)	538, 1527
TaqI	TCGA	3 cut(s)	53, 330, 1571
TatI	WGTACW	1 cut(s)	321
TfiI	GAWTC	4 cut(s)	6, 36, 193, 1490
TscAI	CASTG	1 cut(s)	904
TseI	GCWGC	5 cut(s)	446, 527, 1141, 1477, 1597
TspDTI	ATGAA	6 cut(s)	73, 404, 824, 1215, 1262, 1290
TspRI	CASTG	1 cut(s)	904
Van91I	CCANNNNNTGG	1 cut(s)	1247
VpaK11BI	GGWCC	5 cut(s)	682, 748, 1087, 1350, 1585
XagI	CCTNNNNNAGG	2 cut(s)	766, 1248
XapI	RAATTY	6 cut(s)	120, 227, 341, 938, 980, 1400
XceI	RCATGY	3 cut(s)	712, 1189, 1442
XspI	CTAG	2 cut(s)	44, 1592
ZraI	GACGTC	1 cut(s)	1525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.