AT2G21080

Protein of unknown function (DUF3537)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012910
Physical Location & Seq
Forward (+)
9043699 .. 9045389
1691 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G21080.1

Sequence Viewer

Length: 1245 bp
ATGAATCCTGGTGAAGATGAATACTTTCTCCTTCACCTCCCAAACCTCTCTAACACCCCCTTACAACCTTCAAAATCCTTGCCTTCTGATGATTTGCGCAACTTTCGTCTTCTCCTCAAGTGGTGCGCTTTGGATCACTCCTCCTCTTGTGGTAAAGCTGTGTCCTATATGATGTTTGTAGTCTTCACCTTACTAGTCCCTCTCATAAGTTGTCTGTTTATCAAAACTCCTAGAAACCGGCCTTCAGCAGTTATGGATGCGAACTCTTTCAATGTGCTCGTCCAGTTTCCAGAGTCTGGACTTGCCGTCATTGGTTTCTTGACTCTAATATGTTTCTTCAGAATATATAGTCTCACAAAGCTTCTGTTTCTTGATGATTCTACCTTGGTGAGGCTTGGATATTCACGAGAACTTGACAAGGCCTTACGTTACCTAGCCTACATACTTGTACCGTCTTTCCTTGTGGAACTTGTGCATAAGAGCATATTTTTCTACTCCGCCGAAGTATCATTTCCTTTCATAAAGTCATCTTGTGCTGCATTGAACTTTGTGATGTTCTTCCTCGTCTTATTTTCATGGGTTTACCGGACAGGAGTGTTCTTGCTTGTTTGTATCTTGTTCCGGTTGACCTGTGAGCTGCAGATACTGAGGTTTCGAGGGCTTCACAAGCTGTTTGATAGATGTGGATCAGACACCATAGAAGATGTATGCAAGGAACATGTGAGGATCAAGAAACAATTGTCGGCTACAAGTCACAGATACAGGTTCTTCATCATCACCGCCTTTGTTGTGATAAGTACCAGTCAGTTTGTGGCCTTATTGTTGGTTCTTGCCTCAAAGTCTGAAAAGAGTTTCCTCAGCTCTGGTGATTTGGTGGTATGTTCTGCAGTACAGCTAAGTGGATTCTTCTTGTGCTTGTTGGGTGCTGCAAGAATCACACACAGAGCTCAAGGAGTAGTGTGTATTGCAACAAGGTGGCACATGGCTTTGACATGCGCTTCTGAAGCCGTATCACCCGAAAGTGACACTGACTCATCCGACAACATATACATCAATGTGTCACCGTCACTGGATCTATCTTCCTTCTTCCAGGCTAGGCAAGCTCTAGTGGAATATTTGCGACATAACAACAAGGGGATTACACTCTATGGTTATGCACTCGATAGGGGACTGCTTCATACGCTCTTTGCATTTGAGTTCTCTCTGGTGATGTGGATCCTGAGCAAAGTCGTGGTTCTATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3537

Protein Analysis

414

Amino Acids

46.79

Weight (kDa)

8.73

Isoelectric Point (pI)

38.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3537 PF12056 30 - 348 1.7e-104 Protein of unknown function (DUF3537)
DUF3537 PF12056 338 - 398 1.8e-15 Protein of unknown function (DUF3537)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012910)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21080
fragaria_vesca FvH4_2g36520
malus_domestica MD08G1125000.v1.1 MD15G1104300.v1.1 MD15G1104400.v1.1 MD15G1104600.v1.1
prunus_persica Prupe.1G456600_v2.0.a1
pyrus_communis pycom08g10370
rosa_chinensis RchiOBHm_Chr6g0305351
rosa_laevigata RLG00000010897
rosa_multiflora Rmu_ssc0000148.1_g000004
rosa_roxburghii Rroxscaffold_7G00162880
rosa_rugosa Rorug06G0339800
rosa_samantha Rh6AG451500 Rh6BG450000 Rh6CG465600 Rh6DG452300
rosa_wichuraiana Rw6G039340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 98
AccB7I CCANNNNNTGG 1 cut(s) 296
AciI CCGC 2 cut(s) 498, 780
AclWI GGATC 6 cut(s) 141, 694, 734, 1080, 1210, 1223
AcuI CTGAAG 3 cut(s) 228, 322, 1023
AfaI GTAC 3 cut(s) 450, 799, 891
AfiI CCNNNNNNNGG 2 cut(s) 296, 390
AflIII ACRYGT 1 cut(s) 718
AgsI TTSAA 3 cut(s) 72, 271, 544
AhdI GACNNNNNGTC 1 cut(s) 305
AhlI ACTAGT 1 cut(s) 193
AjnI CCWGG 2 cut(s) 7, 1089
AluBI AGCT 8 cut(s) 158, 361, 637, 670, 861, 895, 947, 1103
AluI AGCT 8 cut(s) 158, 361, 637, 670, 861, 895, 947, 1103
Alw21I GWGCWC 2 cut(s) 279, 949
Alw26I GTCTC 1 cut(s) 356
AlwI GGATC 6 cut(s) 141, 694, 734, 1080, 1210, 1223
AlwNI CAGNNNCTG 2 cut(s) 296, 646
AoxI GGCC 3 cut(s) 239, 420, 813
ApeKI GCWGC 3 cut(s) 536, 637, 926
Asp700I GAANNNNTTC 2 cut(s) 24, 266
AspLEI GCGC 3 cut(s) 99, 128, 998
AsuHPI GGTGA 9 cut(s) 23, 26, 178, 400, 769, 878, 1005, 1053, 1219
BaeI ACNNNNGTAYC 2 cut(s) 635, 668
BamHI GGATCC 1 cut(s) 1215
BanII GRGCYC 1 cut(s) 949
BauI CACGAG 1 cut(s) 405
BbsI GAAGAC 2 cut(s) 101, 175
Bbv12I GWGCWC 2 cut(s) 279, 949
BbvCI CCTCAGC 1 cut(s) 857
BbvI GCAGC 3 cut(s) 523, 624, 913
BceAI ACGGC 2 cut(s) 290, 992
BciT130I CCWGG 2 cut(s) 9, 1091
BcoDI GTCTC 1 cut(s) 356
BcuI ACTAGT 1 cut(s) 193
BfaI CTAG 5 cut(s) 194, 231, 434, 1095, 1106
BfmI CTRYAG 2 cut(s) 638, 885
BisI GCNGC 3 cut(s) 537, 638, 927
BlsI GCNGC 3 cut(s) 538, 639, 928
Bme1390I CCNGG 2 cut(s) 9, 1091
BmeRI GACNNNNNGTC 1 cut(s) 305
BmiI GGNNCC 1 cut(s) 1217
BmrFI CCNGG 2 cut(s) 9, 1091
BmsI GCATC 1 cut(s) 247
BpiI GAAGAC 2 cut(s) 101, 175
Bpu10I CCTNAGC 2 cut(s) 857, 1220
BpuEI CTTGAG 2 cut(s) 101, 933
BsaBI GATNNNNATC 2 cut(s) 685, 1214
BsaJI CCNNGG 1 cut(s) 384
BsaWI WCCGGW 2 cut(s) 585, 621
Bsc4I CCNNNNNNNGG 2 cut(s) 296, 390
Bse118I RCCGGY 1 cut(s) 237
Bse1I ACTGG 3 cut(s) 283, 801, 1074
Bse8I GATNNNNATC 2 cut(s) 685, 1214
BseBI CCWGG 2 cut(s) 9, 1091
BseDI CCNNGG 1 cut(s) 384
BseGI GGATG 2 cut(s) 262, 1034
BseJI GATNNNNATC 2 cut(s) 685, 1214
BseLI CCNNNNNNNGG 2 cut(s) 296, 390
BseMII CTCAG 3 cut(s) 638, 871, 1211
BseNI ACTGG 3 cut(s) 283, 801, 1074
BseRI GAGGAG 3 cut(s) 104, 130, 133
BseXI GCAGC 3 cut(s) 523, 624, 913
BshFI GGCC 3 cut(s) 241, 422, 815
BsiHKAI GWGCWC 2 cut(s) 279, 949
BsiSI CCGG 3 cut(s) 238, 586, 622
BslFI GGGAC 2 cut(s) 182, 1182
BslI CCNNNNNNNGG 2 cut(s) 296, 390
BsmAI GTCTC 1 cut(s) 356
BsmFI GGGAC 2 cut(s) 182, 1182
BsnI GGCC 3 cut(s) 241, 422, 815
Bsp1286I GDGCHC 2 cut(s) 279, 949
Bsp143I GATC 5 cut(s) 133, 686, 726, 1072, 1215
BspACI CCGC 2 cut(s) 498, 780
BspANI GGCC 3 cut(s) 241, 422, 815
BspCNI CTCAG 3 cut(s) 639, 870, 1212
BspLI GGNNCC 1 cut(s) 1217
BspMAI CTGCAG 2 cut(s) 642, 889
BspPI GGATC 6 cut(s) 141, 694, 734, 1080, 1210, 1223
BsrFI RCCGGY 1 cut(s) 237
BsrI ACTGG 3 cut(s) 283, 801, 1074
BssAI RCCGGY 1 cut(s) 237
BssECI CCNNGG 1 cut(s) 384
BssMI GATC 5 cut(s) 133, 686, 726, 1072, 1215
BssSI CACGAG 1 cut(s) 405
BssT1I CCWWGG 1 cut(s) 384
Bst2BI CACGAG 1 cut(s) 405
Bst2UI CCWGG 2 cut(s) 9, 1091
Bst4CI ACNGT 2 cut(s) 453, 1065
BstC8I GCNNGC 1 cut(s) 1101
BstDEI CTNAG 5 cut(s) 647, 857, 896, 1220, 1242
BstENI CCTNNNNNAGG 1 cut(s) 388
BstF5I GGATG 2 cut(s) 262, 1034
BstHHI GCGC 3 cut(s) 99, 128, 998
BstKTI GATC 5 cut(s) 136, 689, 729, 1075, 1218
BstMAI GTCTC 1 cut(s) 356
BstMBI GATC 5 cut(s) 133, 686, 726, 1072, 1215
BstMWI GCNNNNNNNGC 4 cut(s) 667, 1004, 1100, 1180
BstNI CCWGG 2 cut(s) 9, 1091
BstNSI RCATGY 2 cut(s) 722, 996
BstSCI CCNGG 2 cut(s) 7, 1089
BstSFI CTRYAG 2 cut(s) 638, 885
BstV1I GCAGC 3 cut(s) 523, 624, 913
BstV2I GAAGAC 2 cut(s) 101, 175
BstX2I RGATCY 2 cut(s) 1072, 1215
BstYI RGATCY 2 cut(s) 1072, 1215
BsuRI GGCC 3 cut(s) 241, 422, 815
BtsCI GGATG 2 cut(s) 262, 1034
BtsIMutI CAGTG 2 cut(s) 1026, 1067
Cac8I GCNNGC 1 cut(s) 1101
CaiI CAGNNNCTG 2 cut(s) 296, 646
CfoI GCGC 3 cut(s) 99, 128, 998
Cfr10I RCCGGY 1 cut(s) 237
Csp6I GTAC 3 cut(s) 449, 798, 890
CviAII CATG 4 cut(s) 576, 719, 982, 993
CviQI GTAC 3 cut(s) 449, 798, 890
DdeI CTNAG 5 cut(s) 647, 857, 896, 1220, 1242
DpnI GATC 5 cut(s) 135, 688, 728, 1074, 1217
DpnII GATC 5 cut(s) 133, 686, 726, 1072, 1215
DriI GACNNNNNGTC 1 cut(s) 305
Eam1105I GACNNNNNGTC 1 cut(s) 305
EciI GGCGGA 1 cut(s) 487
Ecl136II GAGCTC 1 cut(s) 947
Eco130I CCWWGG 1 cut(s) 384
Eco147I AGGCCT 1 cut(s) 422
Eco24I GRGCYC 1 cut(s) 949
Eco53kI GAGCTC 1 cut(s) 947
Eco57I CTGAAG 3 cut(s) 228, 322, 1023
EcoICRI GAGCTC 1 cut(s) 947
EcoNI CCTNNNNNAGG 1 cut(s) 388
EcoRII CCWGG 2 cut(s) 7, 1089
EcoT14I CCWWGG 1 cut(s) 384
EcoT38I GRGCYC 1 cut(s) 949
ErhI CCWWGG 1 cut(s) 384
FaeI CATG 4 cut(s) 579, 722, 985, 996
FaqI GGGAC 2 cut(s) 182, 1182
FatI CATG 4 cut(s) 575, 718, 981, 992
Fnu4HI GCNGC 3 cut(s) 537, 638, 927
FokI GGATG 2 cut(s) 269, 1021
FriOI GRGCYC 1 cut(s) 949
Fsp4HI GCNGC 3 cut(s) 537, 638, 927
FspBI CTAG 5 cut(s) 194, 231, 434, 1095, 1106
FspI TGCGCA 1 cut(s) 98
GlaI GCGC 3 cut(s) 98, 127, 997
GluI GCNGC 3 cut(s) 537, 638, 927
HaeIII GGCC 3 cut(s) 241, 422, 815
HapII CCGG 3 cut(s) 238, 586, 622
HhaI GCGC 3 cut(s) 99, 128, 998
Hin1II CATG 4 cut(s) 579, 722, 985, 996
Hin6I GCGC 3 cut(s) 97, 126, 996
HinP1I GCGC 3 cut(s) 97, 126, 996
HincII GTYRAC 1 cut(s) 627
HindII GTYRAC 1 cut(s) 627
HindIII AAGCTT 1 cut(s) 359
HinfI GANTC 7 cut(s) 4, 293, 322, 377, 903, 933, 1031
HpaII CCGG 3 cut(s) 238, 586, 622
HphI GGTGA 9 cut(s) 23, 26, 178, 400, 769, 878, 1005, 1053, 1219
Hpy166II GTNNAC 2 cut(s) 583, 627
Hpy188I TCNGA 6 cut(s) 88, 341, 691, 844, 1003, 1039
Hpy188III TCNNGA 7 cut(s) 290, 297, 319, 371, 405, 730, 1219
Hpy8I GTNNAC 2 cut(s) 583, 627
HpyAV CCTTC 5 cut(s) 41, 78, 93, 252, 1093
HpyCH4III ACNGT 2 cut(s) 453, 1065
HpyCH4IV ACGT 1 cut(s) 427
HpyCH4V TGCA 9 cut(s) 475, 539, 640, 711, 887, 929, 968, 1157, 1190
HpyF10VI GCNNNNNNNGC 4 cut(s) 667, 1004, 1100, 1180
HpyF3I CTNAG 5 cut(s) 647, 857, 896, 1220, 1242
HpySE526I ACGT 1 cut(s) 427
Hsp92II CATG 4 cut(s) 579, 722, 985, 996
HspAI GCGC 3 cut(s) 97, 126, 996
Kzo9I GATC 5 cut(s) 133, 686, 726, 1072, 1215
Lsp1109I GCAGC 3 cut(s) 523, 624, 913
LweI GCATC 1 cut(s) 247
MaeI CTAG 5 cut(s) 194, 231, 434, 1095, 1106
MaeII ACGT 1 cut(s) 427
MaeIII GTNAC 5 cut(s) 428, 752, 1022, 1059, 1065
MalI GATC 5 cut(s) 135, 688, 728, 1074, 1217
MboI GATC 5 cut(s) 133, 686, 726, 1072, 1215
MfeI CAATTG 1 cut(s) 737
MflI RGATCY 2 cut(s) 1072, 1215
MhlI GDGCHC 2 cut(s) 279, 949
MluCI AATT 1 cut(s) 737
MlyI GAGTC 3 cut(s) 302, 316, 1025
MmeI TCCRAC 1 cut(s) 1062
MroXI GAANNNNTTC 2 cut(s) 24, 266
MslI CAYNNNNRTG 1 cut(s) 1055
MspI CCGG 3 cut(s) 238, 586, 622
MspR9I CCNGG 2 cut(s) 9, 1091
MunI CAATTG 1 cut(s) 737
MvaI CCWGG 2 cut(s) 9, 1091
MwoI GCNNNNNNNGC 4 cut(s) 667, 1004, 1100, 1180
NdeII GATC 5 cut(s) 133, 686, 726, 1072, 1215
NlaIII CATG 4 cut(s) 579, 722, 985, 996
NlaIV GGNNCC 1 cut(s) 1217
NmuCI GTSAC 4 cut(s) 752, 1022, 1059, 1065
NsbI TGCGCA 1 cut(s) 98
NspI RCATGY 2 cut(s) 722, 996
PceI AGGCCT 1 cut(s) 422
PciI ACATGT 1 cut(s) 718
PdmI GAANNNNTTC 2 cut(s) 24, 266
PfeI GAWTC 4 cut(s) 4, 377, 903, 933
PflMI CCANNNNNTGG 1 cut(s) 296
PkrI GCNGC 3 cut(s) 538, 639, 928
PleI GAGTC 3 cut(s) 301, 316, 1025
PpsI GAGTC 3 cut(s) 301, 316, 1025
PscI ACATGT 1 cut(s) 718
Psp124BI GAGCTC 1 cut(s) 949
Psp6I CCWGG 2 cut(s) 7, 1089
PspGI CCWGG 2 cut(s) 7, 1089
PspN4I GGNNCC 1 cut(s) 1217
PstI CTGCAG 2 cut(s) 642, 889
PstNI CAGNNNCTG 2 cut(s) 296, 646
PsuI RGATCY 2 cut(s) 1072, 1215
RsaI GTAC 3 cut(s) 450, 799, 891
RsaNI GTAC 3 cut(s) 449, 798, 890
RseI CAYNNNNRTG 1 cut(s) 1055
SacI GAGCTC 1 cut(s) 949
SatI GCNGC 3 cut(s) 537, 638, 927
Sau3AI GATC 5 cut(s) 133, 686, 726, 1072, 1215
SchI GAGTC 3 cut(s) 302, 316, 1025
ScrFI CCNGG 2 cut(s) 9, 1091
SduI GDGCHC 2 cut(s) 279, 949
SfaNI GCATC 1 cut(s) 247
SfcI CTRYAG 2 cut(s) 638, 885
SmiMI CAYNNNNRTG 1 cut(s) 1055
SmlI CTYRAG 2 cut(s) 116, 948
SmoI CTYRAG 2 cut(s) 116, 948
SpeI ACTAGT 1 cut(s) 193
Sse9I AATT 1 cut(s) 737
SseBI AGGCCT 1 cut(s) 422
SsiI CCGC 2 cut(s) 498, 780
SspI AATATT 1 cut(s) 1115
SspMI CTAG 5 cut(s) 194, 231, 434, 1095, 1106
SstI GAGCTC 1 cut(s) 949
StuI AGGCCT 1 cut(s) 422
StyD4I CCNGG 2 cut(s) 7, 1089
StyI CCWWGG 1 cut(s) 384
TaaI ACNGT 2 cut(s) 453, 1065
TaiI ACGT 1 cut(s) 430
TaqI TCGA 2 cut(s) 655, 1161
TasI AATT 1 cut(s) 737
TatI WGTACW 1 cut(s) 889
TfiI GAWTC 4 cut(s) 4, 377, 903, 933
TscAI CASTG 2 cut(s) 1033, 1074
TseFI GTSAC 4 cut(s) 752, 1022, 1059, 1065
TseI GCWGC 3 cut(s) 536, 637, 926
Tsp45I GTSAC 4 cut(s) 752, 1022, 1059, 1065
TspDTI ATGAA 6 cut(s) 17, 33, 508, 564, 760, 1166
TspRI CASTG 2 cut(s) 1033, 1074
Van91I CCANNNNNTGG 1 cut(s) 296
XagI CCTNNNNNAGG 1 cut(s) 388
XceI RCATGY 2 cut(s) 722, 996
XcmI CCANNNNNNNNNTGG 1 cut(s) 808
XmnI GAANNNNTTC 2 cut(s) 24, 266
XspI CTAG 5 cut(s) 194, 231, 434, 1095, 1106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.