Rroxscaffold_7G00162880

Protein of unknown function (DUF3537)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0012910
Physical Location & Seq
Reverse (-)
5257039 .. 5258767
1729 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00162880.1

Sequence Viewer

Length: 1320 bp
ATGAACCCCTCCACCACTTCACCCAAAACCCACATGATCAACATCAACTCCAGCAGCAATGACTCAGATCAGCCAAACAAACCCTTACTTCAAAAATCCCCAAAACCCTCCGACGAGCTATCCAACTTCCAAATCAGCCTCAAATGGTGCGCACTCGACCACTCCACCTACCTGGGAAAGTTTATCTCCTACTTCACCTTCATCCTCCTGACCCTCATCGTCCCAATCCTAACTTCTCTCACACTTAAGCTTCCAACCAAGGACTACCCCATTTCCTTTAACAAACTAGTCCAGCTCCCCGAATCCGGGTTAGCTGCCATTGCCTTCTTCACACTCTCCGCCTTCTTTCGGAATTACGGCCTCAGGCAGCTCCTATTCCTTGATGGCCTCGAAGACGATACTTTCTCTGTCCGGAGGGGATACACCCGCGAGGTCGATAAGGCCTTCAAGTGCTTGGTATGCATACTCTTGCCTTCGTTCTTCATCGAGCTTGCTCACAAGATTCTATTCTTCACCACCATGAAAGTGTCACTGCCATATATGAGTCCGAGTGTCCCGTTGAATTCCATTGTGTTTGTTTTGGTGTTGGCTTCGTGGGTTTATCGGACCGGGGTGTTCTTGCTGGTTTGTATTCTCTTCCGATTGACATGTGAGCTCCAAATACTTCGGTTCGAAGGGTTGCATAAGTTCTTTGAAGGGTCTGATTCCAATTCTAGAGTCATATTTCAGGAACATGTGAGGATAAGAAAGCAATTGTGGGTTACGAGCCACAGGTACAGATTCTTTATCATTGGGTGCTGGTTTACCAGCACCGTCAGCCAATTTGCAGCCATGTTGATGGTTCTGGCATCCAAGGCAGAGAAGACTTTTCTCAACTCCGGTGACCTTGTGGTTTGCTCGGCTGTTGAGCTAAGTGGGTTGTTTTTGTGCTTAATGGAGGCAGCAAGGATGACACATAGAGCTCAAGGAATTGTTGCAATTGCTACAAGATGGCATATGCTTTTAACTTGTTCATCTGCTGCTGGGTTAGATTCCGACAAGCAGGGGAAAGGCCAGAGCCCTGAGGCTAATGGAGGCTGTGATGGAGAGAGTGACAATGATTCATCGGACATTTCCACTTCTGTTTCTCCACATGACCCTTCCTCGTTCCAAACCAGGCAAGCTTTAGACGGTGTGCATGCAGTGACATACTTGGGACACAACCATGGAGGGATCACGCTGTTCGGATTTGCACTTGATCGAGGGATGCTTCACACAATATTCGCCTTCGAGTTCTCTCTGGTGCTATGGATACTCAGTAAAGTAGTTGTTTTGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3537

Protein Analysis

439

Amino Acids

49.07

Weight (kDa)

8.27

Isoelectric Point (pI)

40.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3537 PF12056 38 - 423 3.6e-138 Protein of unknown function (DUF3537)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012910)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21080
fragaria_vesca FvH4_2g36520
malus_domestica MD08G1125000.v1.1 MD15G1104300.v1.1 MD15G1104400.v1.1 MD15G1104600.v1.1
prunus_persica Prupe.1G456600_v2.0.a1
pyrus_communis pycom08g10370
rosa_chinensis RchiOBHm_Chr6g0305351
rosa_laevigata RLG00000010897
rosa_multiflora Rmu_ssc0000148.1_g000004
rosa_roxburghii Rroxscaffold_7G00162880
rosa_rugosa Rorug06G0339800
rosa_samantha Rh6AG451500 Rh6BG450000 Rh6CG465600 Rh6DG452300
rosa_wichuraiana Rw6G039340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 151
AccII CGCG 1 cut(s) 429
AccIII TCCGGA 1 cut(s) 411
AciI CCGC 2 cut(s) 339, 427
AclWI GGATC 1 cut(s) 1220
AcsI RAATTY 1 cut(s) 562
AfaI GTAC 1 cut(s) 776
AfiI CCNNNNNNNGG 3 cut(s) 305, 306, 348
AflII CTTAAG 1 cut(s) 245
AflIII ACRYGT 2 cut(s) 647, 733
AgsI TTSAA 4 cut(s) 92, 448, 562, 695
AhlI ACTAGT 1 cut(s) 286
AjnI CCWGG 2 cut(s) 171, 1154
AjuI GAANNNNNNNTTGG 2 cut(s) 217, 249
Alw21I GWGCWC 2 cut(s) 657, 964
AlwI GGATC 1 cut(s) 1220
Aor13HI TCCGGA 1 cut(s) 411
AoxI GGCC 4 cut(s) 358, 385, 441, 1051
ApeKI GCWGC 6 cut(s) 54, 314, 367, 827, 941, 1019
ApoI RAATTY 1 cut(s) 562
AspLEI GCGC 1 cut(s) 152
AspS9I GGNCC 1 cut(s) 606
AsuC2I CCSGG 2 cut(s) 307, 610
AsuHPI GGTGA 4 cut(s) 12, 187, 505, 893
AsuII TTCGAA 1 cut(s) 672
AvaII GGWCC 1 cut(s) 606
AxyI CCTNAGG 2 cut(s) 362, 1062
BanII GRGCYC 3 cut(s) 657, 964, 1061
BbsI GAAGAC 2 cut(s) 399, 869
Bbv12I GWGCWC 2 cut(s) 657, 964
BbvI GCAGC 6 cut(s) 66, 301, 379, 839, 953, 1006
BccI CCATC 4 cut(s) 377, 832, 984, 1076
BceAI ACGGC 1 cut(s) 373
BciT130I CCWGG 2 cut(s) 173, 1156
BciVI GTATCC 2 cut(s) 413, 1284
BclI TGATCA 1 cut(s) 36
BcnI CCSGG 2 cut(s) 307, 610
BcuI ACTAGT 1 cut(s) 286
BfaI CTAG 2 cut(s) 287, 714
BfrI CTTAAG 1 cut(s) 245
BfuI GTATCC 2 cut(s) 413, 1284
BisI GCNGC 6 cut(s) 55, 315, 368, 828, 942, 1020
BlsI GCNGC 6 cut(s) 56, 316, 369, 829, 943, 1021
Bme1390I CCNGG 4 cut(s) 173, 307, 610, 1156
Bme18I GGWCC 1 cut(s) 606
BmgT120I GGNCC 1 cut(s) 606
BmrFI CCNGG 4 cut(s) 173, 307, 610, 1156
BmsI GCATC 2 cut(s) 857, 1236
BpiI GAAGAC 2 cut(s) 399, 869
BpmI CTGGAG 1 cut(s) 34
Bpu14I TTCGAA 1 cut(s) 672
BpuEI CTTGAG 1 cut(s) 948
BpuMI CCSGG 2 cut(s) 307, 610
BsaBI GATNNNNATC 1 cut(s) 41
BsaJI CCNNGG 5 cut(s) 172, 258, 609, 852, 1204
BsaWI WCCGGW 2 cut(s) 411, 878
BsaXI ACNNNNNCTCC 2 cut(s) 32, 62
Bsc4I CCNNNNNNNGG 3 cut(s) 305, 306, 348
Bse21I CCTNAGG 2 cut(s) 362, 1062
Bse3DI GCAATG 2 cut(s) 64, 318
Bse8I GATNNNNATC 1 cut(s) 41
BseAI TCCGGA 1 cut(s) 411
BseBI CCWGG 2 cut(s) 173, 1156
BseDI CCNNGG 5 cut(s) 172, 258, 609, 852, 1204
BseGI GGATG 4 cut(s) 201, 848, 954, 1251
BseJI GATNNNNATC 1 cut(s) 41
BseLI CCNNNNNNNGG 3 cut(s) 305, 306, 348
BseMI GCAATG 2 cut(s) 64, 318
BseMII CTCAG 4 cut(s) 78, 376, 1053, 1309
BseXI GCAGC 6 cut(s) 66, 301, 379, 839, 953, 1006
BseYI CCCAGC 1 cut(s) 1022
Bsh1236I CGCG 1 cut(s) 429
BshFI GGCC 4 cut(s) 360, 387, 443, 1053
BsiHKAI GWGCWC 2 cut(s) 657, 964
BsiSI CCGG 4 cut(s) 306, 412, 609, 879
BslFI GGGAC 3 cut(s) 206, 539, 1209
BslI CCNNNNNNNGG 3 cut(s) 305, 306, 348
BsmFI GGGAC 3 cut(s) 206, 539, 1209
BsnI GGCC 4 cut(s) 360, 387, 443, 1053
Bsp119I TTCGAA 1 cut(s) 672
Bsp1286I GDGCHC 3 cut(s) 657, 964, 1061
Bsp13I TCCGGA 1 cut(s) 411
Bsp143I GATC 4 cut(s) 36, 67, 1212, 1237
Bsp19I CCATGG 1 cut(s) 1204
BspACI CCGC 2 cut(s) 339, 427
BspANI GGCC 4 cut(s) 360, 387, 443, 1053
BspCNI CTCAG 4 cut(s) 77, 375, 1054, 1308
BspEI TCCGGA 1 cut(s) 411
BspFNI CGCG 1 cut(s) 429
BspPI GGATC 1 cut(s) 1220
BspT104I TTCGAA 1 cut(s) 672
BspTI CTTAAG 1 cut(s) 245
BsrDI GCAATG 2 cut(s) 64, 318
BssECI CCNNGG 5 cut(s) 172, 258, 609, 852, 1204
BssMI GATC 4 cut(s) 36, 67, 1212, 1237
BssT1I CCWWGG 3 cut(s) 258, 852, 1204
Bst2UI CCWGG 2 cut(s) 173, 1156
Bst4CI ACNGT 2 cut(s) 814, 1172
Bst6I CTCTTC 1 cut(s) 641
BstAFI CTTAAG 1 cut(s) 245
BstBI TTCGAA 1 cut(s) 672
BstC8I GCNNGC 3 cut(s) 492, 1161, 1179
BstDEI CTNAG 5 cut(s) 64, 362, 911, 1062, 1295
BstDSI CCRYGG 1 cut(s) 1204
BstEII GGTNACC 1 cut(s) 881
BstF5I GGATG 4 cut(s) 201, 848, 954, 1251
BstFNI CGCG 1 cut(s) 429
BstHHI GCGC 1 cut(s) 152
BstKTI GATC 4 cut(s) 39, 70, 1215, 1240
BstMBI GATC 4 cut(s) 36, 67, 1212, 1237
BstMWI GCNNNNNNNGC 4 cut(s) 320, 459, 816, 854
BstNI CCWGG 2 cut(s) 173, 1156
BstNSI RCATGY 3 cut(s) 651, 737, 1181
BstPI GGTNACC 1 cut(s) 881
BstSCI CCNGG 4 cut(s) 171, 305, 608, 1154
BstUI CGCG 1 cut(s) 429
BstV1I GCAGC 6 cut(s) 66, 301, 379, 839, 953, 1006
BstV2I GAAGAC 2 cut(s) 399, 869
BstXI CCANNNNNNTGG 2 cut(s) 172, 838
Bsu36I CCTNAGG 2 cut(s) 362, 1062
BsuI GTATCC 2 cut(s) 413, 1284
BsuRI GGCC 4 cut(s) 360, 387, 443, 1053
BtgI CCRYGG 1 cut(s) 1204
BtsCI GGATG 4 cut(s) 201, 848, 954, 1251
BtsI GCAGTG 2 cut(s) 530, 1188
BtsIMutI CAGTG 2 cut(s) 530, 1188
Cac8I GCNNGC 3 cut(s) 492, 1161, 1179
CfoI GCGC 1 cut(s) 152
Cfr13I GGNCC 1 cut(s) 606
CpoI CGGWCCG 1 cut(s) 606
Csp6I GTAC 1 cut(s) 775
CspI CGGWCCG 1 cut(s) 606
CviAII CATG 8 cut(s) 34, 520, 648, 734, 832, 1133, 1178, 1205
CviQI GTAC 1 cut(s) 775
DdeI CTNAG 5 cut(s) 64, 362, 911, 1062, 1295
DpnI GATC 4 cut(s) 38, 69, 1214, 1239
DpnII GATC 4 cut(s) 36, 67, 1212, 1237
Eam1104I CTCTTC 1 cut(s) 641
EarI CTCTTC 1 cut(s) 641
EciI GGCGGA 1 cut(s) 328
Ecl136II GAGCTC 2 cut(s) 655, 962
Eco130I CCWWGG 3 cut(s) 258, 852, 1204
Eco147I AGGCCT 1 cut(s) 443
Eco24I GRGCYC 3 cut(s) 657, 964, 1061
Eco47I GGWCC 1 cut(s) 606
Eco53kI GAGCTC 2 cut(s) 655, 962
Eco81I CCTNAGG 2 cut(s) 362, 1062
Eco91I GGTNACC 1 cut(s) 881
EcoICRI GAGCTC 2 cut(s) 655, 962
EcoO65I GGTNACC 1 cut(s) 881
EcoRI GAATTC 1 cut(s) 562
EcoRII CCWGG 2 cut(s) 171, 1154
EcoT14I CCWWGG 3 cut(s) 258, 852, 1204
EcoT22I ATGCAT 1 cut(s) 464
EcoT38I GRGCYC 3 cut(s) 657, 964, 1061
ErhI CCWWGG 3 cut(s) 258, 852, 1204
FaeI CATG 8 cut(s) 37, 523, 651, 737, 835, 1136, 1181, 1208
FaqI GGGAC 3 cut(s) 206, 539, 1209
FatI CATG 8 cut(s) 33, 519, 647, 733, 831, 1132, 1177, 1204
FauI CCCGC 1 cut(s) 434
FauNDI CATATG 1 cut(s) 996
FbaI TGATCA 1 cut(s) 36
Fnu4HI GCNGC 6 cut(s) 55, 315, 368, 828, 942, 1020
FokI GGATG 4 cut(s) 188, 835, 961, 1258
FriOI GRGCYC 3 cut(s) 657, 964, 1061
Fsp4HI GCNGC 6 cut(s) 55, 315, 368, 828, 942, 1020
FspAI RTGCGCAY 1 cut(s) 151
FspBI CTAG 2 cut(s) 287, 714
FspI TGCGCA 1 cut(s) 151
GlaI GCGC 1 cut(s) 151
GluI GCNGC 6 cut(s) 55, 315, 368, 828, 942, 1020
GsaI CCCAGC 1 cut(s) 1026
GsuI CTGGAG 1 cut(s) 34
HaeIII GGCC 4 cut(s) 360, 387, 443, 1053
HapII CCGG 4 cut(s) 306, 412, 609, 879
HhaI GCGC 1 cut(s) 152
Hin1II CATG 8 cut(s) 37, 523, 651, 737, 835, 1136, 1181, 1208
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HindIII AAGCTT 2 cut(s) 248, 1161
HinfI GANTC 9 cut(s) 62, 302, 502, 544, 704, 717, 780, 1031, 1100
HpaII CCGG 4 cut(s) 306, 412, 609, 879
HphI GGTGA 4 cut(s) 12, 187, 505, 893
Hpy166II GTNNAC 1 cut(s) 804
Hpy188III TCNNGA 4 cut(s) 208, 412, 714, 728
Hpy8I GTNNAC 1 cut(s) 804
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 9 cut(s) 208, 334, 352, 454, 483, 668, 689, 1149, 1276
HpyCH4III ACNGT 2 cut(s) 814, 1172
HpyCH4V TGCA 7 cut(s) 462, 682, 827, 977, 1177, 1181, 1232
HpyF10VI GCNNNNNNNGC 4 cut(s) 320, 459, 816, 854
HpyF3I CTNAG 5 cut(s) 64, 362, 911, 1062, 1295
Hsp92II CATG 8 cut(s) 37, 523, 651, 737, 835, 1136, 1181, 1208
HspAI GCGC 1 cut(s) 150
Kpn2I TCCGGA 1 cut(s) 411
Ksp22I TGATCA 1 cut(s) 36
Kzo9I GATC 4 cut(s) 36, 67, 1212, 1237
LmnI GCTCC 3 cut(s) 300, 375, 660
Lsp1109I GCAGC 6 cut(s) 66, 301, 379, 839, 953, 1006
LweI GCATC 2 cut(s) 857, 1236
MaeI CTAG 2 cut(s) 287, 714
MaeIII GTNAC 5 cut(s) 528, 760, 881, 1091, 1183
MalI GATC 4 cut(s) 38, 69, 1214, 1239
MboI GATC 4 cut(s) 36, 67, 1212, 1237
MboII GAAGA 6 cut(s) 319, 404, 472, 502, 628, 874
MfeI CAATTG 2 cut(s) 752, 978
MhlI GDGCHC 3 cut(s) 657, 964, 1061
MluCI AATT 7 cut(s) 352, 562, 709, 752, 821, 969, 978
MlyI GAGTC 3 cut(s) 56, 553, 726
MmeI TCCRAC 4 cut(s) 135, 147, 278, 1059
Mph1103I ATGCAT 1 cut(s) 464
MroI TCCGGA 1 cut(s) 411
MseI TTAA 5 cut(s) 246, 279, 932, 1004, 1318
MslI CAYNNNNRTG 4 cut(s) 518, 524, 836, 1203
MspCI CTTAAG 1 cut(s) 245
MspI CCGG 4 cut(s) 306, 412, 609, 879
MspR9I CCNGG 4 cut(s) 173, 307, 610, 1156
MunI CAATTG 2 cut(s) 752, 978
MvaI CCWGG 2 cut(s) 173, 1156
MvnI CGCG 1 cut(s) 429
MwoI GCNNNNNNNGC 4 cut(s) 320, 459, 816, 854
NciI CCSGG 2 cut(s) 307, 610
NcoI CCATGG 1 cut(s) 1204
NdeI CATATG 1 cut(s) 996
NdeII GATC 4 cut(s) 36, 67, 1212, 1237
NlaIII CATG 8 cut(s) 37, 523, 651, 737, 835, 1136, 1181, 1208
NmeAIII GCCGAG 1 cut(s) 878
NmuCI GTSAC 4 cut(s) 528, 881, 1091, 1183
NsbI TGCGCA 1 cut(s) 151
NsiI ATGCAT 1 cut(s) 464
NspI RCATGY 3 cut(s) 651, 737, 1181
NspV TTCGAA 1 cut(s) 672
PaeI GCATGC 1 cut(s) 1181
PceI AGGCCT 1 cut(s) 443
PciI ACATGT 2 cut(s) 647, 733
PfeI GAWTC 6 cut(s) 302, 502, 704, 780, 1031, 1100
PkrI GCNGC 6 cut(s) 56, 316, 369, 829, 943, 1021
PleI GAGTC 3 cut(s) 56, 552, 725
PpsI GAGTC 3 cut(s) 56, 552, 725
PscI ACATGT 2 cut(s) 647, 733
Psp124BI GAGCTC 2 cut(s) 657, 964
Psp6I CCWGG 2 cut(s) 171, 1154
PspEI GGTNACC 1 cut(s) 881
PspFI CCCAGC 1 cut(s) 1022
PspGI CCWGG 2 cut(s) 171, 1154
PspPI GGNCC 1 cut(s) 606
RsaI GTAC 1 cut(s) 776
RsaNI GTAC 1 cut(s) 775
RseI CAYNNNNRTG 4 cut(s) 518, 524, 836, 1203
Rsr2I CGGWCCG 1 cut(s) 606
RsrII CGGWCCG 1 cut(s) 606
SacI GAGCTC 2 cut(s) 657, 964
SaqAI TTAA 5 cut(s) 246, 279, 932, 1004, 1318
SatI GCNGC 6 cut(s) 55, 315, 368, 828, 942, 1020
Sau3AI GATC 4 cut(s) 36, 67, 1212, 1237
Sau96I GGNCC 1 cut(s) 606
SchI GAGTC 3 cut(s) 56, 553, 726
ScrFI CCNGG 4 cut(s) 173, 307, 610, 1156
SduI GDGCHC 3 cut(s) 657, 964, 1061
SfaNI GCATC 2 cut(s) 857, 1236
SfuI TTCGAA 1 cut(s) 672
SinI GGWCC 1 cut(s) 606
SmiMI CAYNNNNRTG 4 cut(s) 518, 524, 836, 1203
SmlI CTYRAG 2 cut(s) 245, 963
SmoI CTYRAG 2 cut(s) 245, 963
SpeI ACTAGT 1 cut(s) 286
SphI GCATGC 1 cut(s) 1181
Sse9I AATT 7 cut(s) 352, 562, 709, 752, 821, 969, 978
SseBI AGGCCT 1 cut(s) 443
SsiI CCGC 2 cut(s) 339, 427
SspI AATATT 1 cut(s) 1260
SspMI CTAG 2 cut(s) 287, 714
SstI GAGCTC 2 cut(s) 657, 964
StuI AGGCCT 1 cut(s) 443
StyD4I CCNGG 4 cut(s) 171, 305, 608, 1154
StyI CCWWGG 3 cut(s) 258, 852, 1204
TaaI ACNGT 2 cut(s) 814, 1172
TaqI TCGA 7 cut(s) 156, 390, 435, 486, 672, 1240, 1269
TasI AATT 7 cut(s) 352, 562, 709, 752, 821, 969, 978
TfiI GAWTC 6 cut(s) 302, 502, 704, 780, 1031, 1100
Tru1I TTAA 5 cut(s) 246, 279, 932, 1004, 1318
Tru9I TTAA 5 cut(s) 246, 279, 932, 1004, 1318
TscAI CASTG 2 cut(s) 537, 1188
TseFI GTSAC 4 cut(s) 528, 881, 1091, 1183
TseI GCWGC 6 cut(s) 54, 314, 367, 827, 941, 1019
Tsp45I GTSAC 4 cut(s) 528, 881, 1091, 1183
TspDTI ATGAA 6 cut(s) 17, 190, 472, 536, 1002, 1092
TspRI CASTG 2 cut(s) 537, 1188
Vha464I CTTAAG 1 cut(s) 245
VpaK11BI GGWCC 1 cut(s) 606
XapI RAATTY 1 cut(s) 562
XbaI TCTAGA 1 cut(s) 713
XceI RCATGY 3 cut(s) 651, 737, 1181
XspI CTAG 2 cut(s) 287, 714
Zsp2I ATGCAT 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.