FvH4_2g36520

Protein of unknown function (DUF3537)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0012910
Physical Location & Seq
Reverse (-)
26724797 .. 26726203
1407 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g36520.t1

Sequence Viewer

Length: 1203 bp
ATGACACCCTCCACCAATTCAACCAAAACCCACATGATCAACATCAACTCTAGCAGCAATGACTCAGATCAGCCAAACAAACCCTTGCTACAAAAATCACCAGAACCCTCCGACGAGCTATCCAACTTCCAAATCAGCCTCAAATGGTGCGCACTCGACCACTCCACCTCCCTCGGAAAGTTCATCTCCTACTTCACCTTCATCCTCCTGACCCTCGTCGTTCCTATCCTAACTTCTCTCACACTTAAGCTTCCATCCAAGGACCCCACCTCTTTCAACAAACTAGTCCAGCTCCCCGAATCCGGTTTAGCTGCCATTGCCTTCTTCACACTCTCCGCCTTCTTTCGGAACTACGGCCTCGGGCAGCTTCTCTTCCTCGATGGCCTACAAGAGGATACTTTCTCTGTCCGGAGGGGATACACCCGCGAGGTCGATAAGGCCTTCAAGTGCCTGGCATGGATACTCTTGCCTTCGTGCTTCCTTGAGCTCGCTCACAAGGTTATATTCTTCACCACCGTGAAAGTGTCACTTCCATATCTGAGTCCAAGTGTCCCACTGAATTCCATTGTGTTTGTCTTGGTTTTGGCTTCCTGGCTTTATCGGACCGGGGTGTTCTTGCTGGTTTGTATTCTCTTCCGGTTGACATGTGAGCTCCAAATACTAAGGTTCGAAGGACTGCACAAGTTCTTTGAAGGGTGTGATTCCAATTCTAAGGTCATTTTTCAGGAACATGTAAGGATAAGAAAGCAGTTGTGGGTTACGAGCCATAGGTACAGATTTTTTATCATCGGGTGCTGGTTTACCATCACCGTTAGCCAATTTGCAGCCTTGTTGCTGGTTCTGGCATCCAAGGCAGAGAAGACTTTTCTCAACTCCGGTGACCTTGTGGTTTGCTCGGCGGTGGAACTAAGTGGGTTGTTTTTGTGCTTAATGGAGGCAGCAAGAATGACACATAGAGCTCAAGGAATTGTTGCAATTGCTACAAGATGGCACATGCTGTTAACTTGTTCATCTGCTGCTGGGTTAGATTCCGATAAGCAGGGGAAAGGCCAGAGCCCTGAGGCTAATGGAGGCTGCAATGGAGAGAGTGACAATGATTCATCCGATATTTCGACTTCTGTTTCCCCACATGAACCTTCCTCGTTCCAAACCAGGCAAGCATTAGTGCTGTGGGTACTAAGTAAAGTAGTTGTTTTGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3537

Protein Analysis

401

Amino Acids

44.51

Weight (kDa)

8.44

Isoelectric Point (pI)

41.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3537 PF12056 38 - 392 9.8e-125 Protein of unknown function (DUF3537)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012910)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21080
fragaria_vesca FvH4_2g36520
malus_domestica MD08G1125000.v1.1 MD15G1104300.v1.1 MD15G1104400.v1.1 MD15G1104600.v1.1
prunus_persica Prupe.1G456600_v2.0.a1
pyrus_communis pycom08g10370
rosa_chinensis RchiOBHm_Chr6g0305351
rosa_laevigata RLG00000010897
rosa_multiflora Rmu_ssc0000148.1_g000004
rosa_roxburghii Rroxscaffold_7G00162880
rosa_rugosa Rorug06G0339800
rosa_samantha Rh6AG451500 Rh6BG450000 Rh6CG465600 Rh6DG452300
rosa_wichuraiana Rw6G039340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 151
AccII CGCG 1 cut(s) 426
AccIII TCCGGA 1 cut(s) 408
AciI CCGC 3 cut(s) 336, 424, 899
AcsI RAATTY 1 cut(s) 559
AfaI GTAC 2 cut(s) 773, 1176
AfiI CCNNNNNNNGG 3 cut(s) 302, 345, 391
AflII CTTAAG 1 cut(s) 245
AflIII ACRYGT 2 cut(s) 644, 730
AgsI TTSAA 4 cut(s) 21, 277, 445, 692
AhlI ACTAGT 1 cut(s) 283
AjnI CCWGG 3 cut(s) 450, 590, 1151
AleI CACNNNNGTG 1 cut(s) 515
AluBI AGCT 8 cut(s) 118, 250, 292, 311, 367, 487, 652, 959
AluI AGCT 8 cut(s) 118, 250, 292, 311, 367, 487, 652, 959
Alw21I GWGCWC 3 cut(s) 489, 654, 961
Ama87I CYCGRG 1 cut(s) 359
Aor13HI TCCGGA 1 cut(s) 408
AoxI GGCC 4 cut(s) 355, 382, 438, 1048
ApeKI GCWGC 7 cut(s) 54, 311, 364, 824, 938, 1016, 1074
ApoI RAATTY 1 cut(s) 559
AspLEI GCGC 1 cut(s) 152
AspS9I GGNCC 2 cut(s) 262, 603
AsuC2I CCSGG 1 cut(s) 607
AsuHPI GGTGA 5 cut(s) 90, 187, 502, 799, 890
AsuII TTCGAA 1 cut(s) 669
AvaI CYCGRG 1 cut(s) 359
AvaII GGWCC 2 cut(s) 262, 603
AxyI CCTNAGG 1 cut(s) 1059
BanII GRGCYC 4 cut(s) 489, 654, 961, 1058
BbsI GAAGAC 1 cut(s) 866
Bbv12I GWGCWC 3 cut(s) 489, 654, 961
BbvI GCAGC 7 cut(s) 66, 298, 376, 836, 950, 1003, 1061
BccI CCATC 4 cut(s) 262, 374, 812, 981
BceAI ACGGC 1 cut(s) 370
BciT130I CCWGG 3 cut(s) 452, 592, 1153
BciVI GTATCC 3 cut(s) 388, 410, 453
BclI TGATCA 1 cut(s) 36
BcnI CCSGG 1 cut(s) 607
BcuI ACTAGT 1 cut(s) 283
BfaI CTAG 2 cut(s) 51, 284
BfrI CTTAAG 1 cut(s) 245
BfuI GTATCC 3 cut(s) 388, 410, 453
BisI GCNGC 7 cut(s) 55, 312, 365, 825, 939, 1017, 1075
BlsI GCNGC 7 cut(s) 56, 313, 366, 826, 940, 1018, 1076
Bme1390I CCNGG 4 cut(s) 452, 592, 607, 1153
Bme18I GGWCC 2 cut(s) 262, 603
BmeT110I CYCGRG 1 cut(s) 359
BmgT120I GGNCC 2 cut(s) 262, 603
BmiI GGNNCC 1 cut(s) 264
BmrFI CCNGG 4 cut(s) 452, 592, 607, 1153
BmsI GCATC 1 cut(s) 854
BoxI GACNNNNGTC 1 cut(s) 215
BpiI GAAGAC 1 cut(s) 866
Bpu14I TTCGAA 1 cut(s) 669
BpuEI CTTGAG 2 cut(s) 503, 945
BpuMI CCSGG 1 cut(s) 607
BsaBI GATNNNNATC 1 cut(s) 41
BsaJI CCNNGG 5 cut(s) 172, 258, 358, 606, 849
BsaWI WCCGGW 4 cut(s) 302, 408, 636, 875
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 3 cut(s) 302, 345, 391
Bse21I CCTNAGG 1 cut(s) 1059
Bse3DI GCAATG 3 cut(s) 64, 315, 1084
Bse8I GATNNNNATC 1 cut(s) 41
BseAI TCCGGA 1 cut(s) 408
BseBI CCWGG 3 cut(s) 452, 592, 1153
BseDI CCNNGG 5 cut(s) 172, 258, 358, 606, 849
BseGI GGATG 4 cut(s) 201, 254, 845, 1100
BseJI GATNNNNATC 1 cut(s) 41
BseLI CCNNNNNNNGG 3 cut(s) 302, 345, 391
BseMI GCAATG 3 cut(s) 64, 315, 1084
BseMII CTCAG 3 cut(s) 78, 530, 1050
BseXI GCAGC 7 cut(s) 66, 298, 376, 836, 950, 1003, 1061
BseYI CCCAGC 1 cut(s) 1019
BsgI GTGCAG 1 cut(s) 662
Bsh1236I CGCG 1 cut(s) 426
BshFI GGCC 4 cut(s) 357, 384, 440, 1050
BsiHKAI GWGCWC 3 cut(s) 489, 654, 961
BsiHKCI CYCGRG 1 cut(s) 359
BsiSI CCGG 5 cut(s) 303, 409, 606, 637, 876
BslFI GGGAC 1 cut(s) 536
BslI CCNNNNNNNGG 3 cut(s) 302, 345, 391
BsmFI GGGAC 1 cut(s) 536
BsnI GGCC 4 cut(s) 357, 384, 440, 1050
BsoBI CYCGRG 1 cut(s) 359
Bsp119I TTCGAA 1 cut(s) 669
Bsp1286I GDGCHC 4 cut(s) 489, 654, 961, 1058
Bsp13I TCCGGA 1 cut(s) 408
Bsp143I GATC 2 cut(s) 36, 67
BspACI CCGC 3 cut(s) 336, 424, 899
BspANI GGCC 4 cut(s) 357, 384, 440, 1050
BspCNI CTCAG 3 cut(s) 77, 531, 1051
BspEI TCCGGA 1 cut(s) 408
BspFNI CGCG 1 cut(s) 426
BspLI GGNNCC 1 cut(s) 264
BspT104I TTCGAA 1 cut(s) 669
BspTI CTTAAG 1 cut(s) 245
BsrDI GCAATG 3 cut(s) 64, 315, 1084
BssECI CCNNGG 5 cut(s) 172, 258, 358, 606, 849
BssMI GATC 2 cut(s) 36, 67
BssT1I CCWWGG 2 cut(s) 258, 849
Bst2UI CCWGG 3 cut(s) 452, 592, 1153
Bst4CI ACNGT 2 cut(s) 517, 811
Bst6I CTCTTC 2 cut(s) 377, 638
BstAFI CTTAAG 1 cut(s) 245
BstBI TTCGAA 1 cut(s) 669
BstC8I GCNNGC 2 cut(s) 489, 1158
BstDEI CTNAG 8 cut(s) 64, 539, 662, 711, 908, 1059, 1178, 1200
BstEII GGTNACC 1 cut(s) 878
BstENI CCTNNNNNAGG 1 cut(s) 389
BstF5I GGATG 4 cut(s) 201, 254, 845, 1100
BstFNI CGCG 1 cut(s) 426
BstHHI GCGC 1 cut(s) 152
BstKTI GATC 2 cut(s) 39, 70
BstMBI GATC 2 cut(s) 36, 67
BstMWI GCNNNNNNNGC 2 cut(s) 317, 851
BstNI CCWGG 3 cut(s) 452, 592, 1153
BstNSI RCATGY 3 cut(s) 648, 734, 997
BstPAI GACNNNNGTC 1 cut(s) 215
BstPI GGTNACC 1 cut(s) 878
BstSCI CCNGG 4 cut(s) 450, 590, 605, 1151
BstUI CGCG 1 cut(s) 426
BstV1I GCAGC 7 cut(s) 66, 298, 376, 836, 950, 1003, 1061
BstV2I GAAGAC 1 cut(s) 866
Bsu36I CCTNAGG 1 cut(s) 1059
BsuI GTATCC 3 cut(s) 388, 410, 453
BsuRI GGCC 4 cut(s) 357, 384, 440, 1050
BtsCI GGATG 4 cut(s) 201, 254, 845, 1100
BtsIMutI CAGTG 1 cut(s) 554
Cac8I GCNNGC 2 cut(s) 489, 1158
CfoI GCGC 1 cut(s) 152
Cfr13I GGNCC 2 cut(s) 262, 603
CpoI CGGWCCG 1 cut(s) 603
Csp6I GTAC 2 cut(s) 772, 1175
CspI CGGWCCG 1 cut(s) 603
CviAII CATG 6 cut(s) 34, 456, 645, 731, 994, 1130
CviQI GTAC 2 cut(s) 772, 1175
DdeI CTNAG 8 cut(s) 64, 539, 662, 711, 908, 1059, 1178, 1200
DpnI GATC 2 cut(s) 38, 69
DpnII GATC 2 cut(s) 36, 67
Eam1104I CTCTTC 2 cut(s) 377, 638
EarI CTCTTC 2 cut(s) 377, 638
EciI GGCGGA 1 cut(s) 325
Ecl136II GAGCTC 3 cut(s) 487, 652, 959
Eco130I CCWWGG 2 cut(s) 258, 849
Eco147I AGGCCT 1 cut(s) 440
Eco24I GRGCYC 4 cut(s) 489, 654, 961, 1058
Eco47I GGWCC 2 cut(s) 262, 603
Eco53kI GAGCTC 3 cut(s) 487, 652, 959
Eco81I CCTNAGG 1 cut(s) 1059
Eco88I CYCGRG 1 cut(s) 359
Eco91I GGTNACC 1 cut(s) 878
EcoICRI GAGCTC 3 cut(s) 487, 652, 959
EcoNI CCTNNNNNAGG 1 cut(s) 389
EcoO109I RGGNCCY 1 cut(s) 262
EcoO65I GGTNACC 1 cut(s) 878
EcoRI GAATTC 1 cut(s) 559
EcoRII CCWGG 3 cut(s) 450, 590, 1151
EcoT14I CCWWGG 2 cut(s) 258, 849
EcoT38I GRGCYC 4 cut(s) 489, 654, 961, 1058
ErhI CCWWGG 2 cut(s) 258, 849
FaeI CATG 6 cut(s) 37, 459, 648, 734, 997, 1133
FalI AAGNNNNNCTT 2 cut(s) 513, 545
FaqI GGGAC 1 cut(s) 536
FatI CATG 6 cut(s) 33, 455, 644, 730, 993, 1129
FauI CCCGC 1 cut(s) 431
FbaI TGATCA 1 cut(s) 36
Fnu4HI GCNGC 7 cut(s) 55, 312, 365, 825, 939, 1017, 1075
FokI GGATG 4 cut(s) 188, 241, 832, 1087
FriOI GRGCYC 4 cut(s) 489, 654, 961, 1058
Fsp4HI GCNGC 7 cut(s) 55, 312, 365, 825, 939, 1017, 1075
FspAI RTGCGCAY 1 cut(s) 151
FspBI CTAG 2 cut(s) 51, 284
FspI TGCGCA 1 cut(s) 151
GlaI GCGC 1 cut(s) 151
GluI GCNGC 7 cut(s) 55, 312, 365, 825, 939, 1017, 1075
GsaI CCCAGC 1 cut(s) 1023
HaeIII GGCC 4 cut(s) 357, 384, 440, 1050
HapII CCGG 5 cut(s) 303, 409, 606, 637, 876
HhaI GCGC 1 cut(s) 152
Hin1II CATG 6 cut(s) 37, 459, 648, 734, 997, 1133
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HincII GTYRAC 2 cut(s) 642, 1002
HindII GTYRAC 2 cut(s) 642, 1002
HindIII AAGCTT 1 cut(s) 248
HinfI GANTC 6 cut(s) 62, 299, 541, 701, 1028, 1097
HpaI GTTAAC 1 cut(s) 1002
HpaII CCGG 5 cut(s) 303, 409, 606, 637, 876
HphI GGTGA 5 cut(s) 90, 187, 502, 799, 890
Hpy166II GTNNAC 3 cut(s) 642, 801, 1002
Hpy188I TCNGA 8 cut(s) 67, 112, 176, 348, 540, 603, 1033, 1105
Hpy188III TCNNGA 3 cut(s) 208, 409, 725
Hpy8I GTNNAC 3 cut(s) 642, 801, 1002
Hpy99I CGWCG 2 cut(s) 116, 221
HpyAV CCTTC 8 cut(s) 208, 331, 349, 451, 480, 665, 686, 1146
HpyCH4III ACNGT 2 cut(s) 517, 811
HpyCH4V TGCA 4 cut(s) 679, 824, 974, 1077
HpyF10VI GCNNNNNNNGC 2 cut(s) 317, 851
HpyF3I CTNAG 8 cut(s) 64, 539, 662, 711, 908, 1059, 1178, 1200
Hsp92II CATG 6 cut(s) 37, 459, 648, 734, 997, 1133
HspAI GCGC 1 cut(s) 150
Kpn2I TCCGGA 1 cut(s) 408
Ksp22I TGATCA 1 cut(s) 36
KspAI GTTAAC 1 cut(s) 1002
Kzo9I GATC 2 cut(s) 36, 67
LmnI GCTCC 2 cut(s) 297, 657
Lsp1109I GCAGC 7 cut(s) 66, 298, 376, 836, 950, 1003, 1061
LweI GCATC 1 cut(s) 854
MaeI CTAG 2 cut(s) 51, 284
MaeIII GTNAC 4 cut(s) 525, 757, 878, 1088
MalI GATC 2 cut(s) 38, 69
MboI GATC 2 cut(s) 36, 67
MboII GAAGA 5 cut(s) 316, 364, 499, 625, 871
MfeI CAATTG 1 cut(s) 975
MhlI GDGCHC 4 cut(s) 489, 654, 961, 1058
MluCI AATT 6 cut(s) 16, 559, 706, 818, 966, 975
MlyI GAGTC 2 cut(s) 56, 550
MmeI TCCRAC 2 cut(s) 135, 147
MroI TCCGGA 1 cut(s) 408
MseI TTAA 3 cut(s) 246, 929, 1001
MslI CAYNNNNRTG 1 cut(s) 515
MspCI CTTAAG 1 cut(s) 245
MspI CCGG 5 cut(s) 303, 409, 606, 637, 876
MspR9I CCNGG 4 cut(s) 452, 592, 607, 1153
MunI CAATTG 1 cut(s) 975
MvaI CCWGG 3 cut(s) 452, 592, 1153
MvnI CGCG 1 cut(s) 426
MwoI GCNNNNNNNGC 2 cut(s) 317, 851
NciI CCSGG 1 cut(s) 607
NdeII GATC 2 cut(s) 36, 67
NlaIII CATG 6 cut(s) 37, 459, 648, 734, 997, 1133
NlaIV GGNNCC 1 cut(s) 264
NmeAIII GCCGAG 1 cut(s) 875
NmuCI GTSAC 3 cut(s) 525, 878, 1088
NsbI TGCGCA 1 cut(s) 151
NspI RCATGY 3 cut(s) 648, 734, 997
NspV TTCGAA 1 cut(s) 669
OliI CACNNNNGTG 1 cut(s) 515
PceI AGGCCT 1 cut(s) 440
PciI ACATGT 2 cut(s) 644, 730
PfeI GAWTC 4 cut(s) 299, 701, 1028, 1097
PkrI GCNGC 7 cut(s) 56, 313, 366, 826, 940, 1018, 1076
PleI GAGTC 2 cut(s) 56, 549
PpsI GAGTC 2 cut(s) 56, 549
PpuMI RGGWCCY 1 cut(s) 262
PscI ACATGT 2 cut(s) 644, 730
PshAI GACNNNNGTC 1 cut(s) 215
Psp124BI GAGCTC 3 cut(s) 489, 654, 961
Psp5II RGGWCCY 1 cut(s) 262
Psp6I CCWGG 3 cut(s) 450, 590, 1151
PspEI GGTNACC 1 cut(s) 878
PspFI CCCAGC 1 cut(s) 1019
PspGI CCWGG 3 cut(s) 450, 590, 1151
PspN4I GGNNCC 1 cut(s) 264
PspPI GGNCC 2 cut(s) 262, 603
PspPPI RGGWCCY 1 cut(s) 262
RsaI GTAC 2 cut(s) 773, 1176
RsaNI GTAC 2 cut(s) 772, 1175
RseI CAYNNNNRTG 1 cut(s) 515
Rsr2I CGGWCCG 1 cut(s) 603
RsrII CGGWCCG 1 cut(s) 603
SacI GAGCTC 3 cut(s) 489, 654, 961
SaqAI TTAA 3 cut(s) 246, 929, 1001
SatI GCNGC 7 cut(s) 55, 312, 365, 825, 939, 1017, 1075
Sau3AI GATC 2 cut(s) 36, 67
Sau96I GGNCC 2 cut(s) 262, 603
SchI GAGTC 2 cut(s) 56, 550
ScrFI CCNGG 4 cut(s) 452, 592, 607, 1153
SduI GDGCHC 4 cut(s) 489, 654, 961, 1058
SfaNI GCATC 1 cut(s) 854
SfuI TTCGAA 1 cut(s) 669
SinI GGWCC 2 cut(s) 262, 603
SmiMI CAYNNNNRTG 1 cut(s) 515
SmlI CTYRAG 3 cut(s) 245, 482, 960
SmoI CTYRAG 3 cut(s) 245, 482, 960
SpeI ACTAGT 1 cut(s) 283
Sse9I AATT 6 cut(s) 16, 559, 706, 818, 966, 975
SseBI AGGCCT 1 cut(s) 440
SsiI CCGC 3 cut(s) 336, 424, 899
SspMI CTAG 2 cut(s) 51, 284
SstI GAGCTC 3 cut(s) 489, 654, 961
StuI AGGCCT 1 cut(s) 440
StyD4I CCNGG 4 cut(s) 450, 590, 605, 1151
StyI CCWWGG 2 cut(s) 258, 849
TaaI ACNGT 2 cut(s) 517, 811
TaqI TCGA 5 cut(s) 156, 378, 432, 669, 1112
TasI AATT 6 cut(s) 16, 559, 706, 818, 966, 975
TfiI GAWTC 4 cut(s) 299, 701, 1028, 1097
Tru1I TTAA 3 cut(s) 246, 929, 1001
Tru9I TTAA 3 cut(s) 246, 929, 1001
TscAI CASTG 1 cut(s) 561
TseFI GTSAC 3 cut(s) 525, 878, 1088
TseI GCWGC 7 cut(s) 54, 311, 364, 824, 938, 1016, 1074
Tsp45I GTSAC 3 cut(s) 525, 878, 1088
TspDTI ATGAA 5 cut(s) 172, 190, 999, 1089, 1146
TspRI CASTG 1 cut(s) 561
Vha464I CTTAAG 1 cut(s) 245
VpaK11BI GGWCC 2 cut(s) 262, 603
XagI CCTNNNNNAGG 1 cut(s) 389
XapI RAATTY 1 cut(s) 559
XceI RCATGY 3 cut(s) 648, 734, 997
XspI CTAG 2 cut(s) 51, 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.