pycom08g10370

Protein of unknown function (DUF3537)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0012910
Physical Location & Seq
Forward (+)
8699408 .. 8700044
637 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g10370.1

Sequence Viewer

Length: 369 bp
ATGGAGGCAGCAAGAATTACTCATAGAGCTCAAGGAGTTGTAGCAATTGCAACAAGATGGCACATGCTCTTGACTTGTCCGTCTGCCGGATCAGACCAGCAGTGGAAAAGCCGGCAGATTAGCTCAAAGGCAAATGGACGCCGTGGAGAGAGTGACTCTGAACATTCATCAGACATTTCCACTTCAGTTCCTCCGCAGGAGCCTTCCTCATTTCAAACCAGGCAAGCTCTGGTGGCGTATTTGAGTCACAACAACGGAGGGATCACGCTGTATGGGTTTGCGCTTGATCGGGGGTTGCTTCACACACTATTTGCATTTGAGTTCTCTCTGGTGCTGTGGGTGCTCAGCAAAGTGGTTGTTTTGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3537

Protein Analysis

123

Amino Acids

13.41

Weight (kDa)

9.03

Isoelectric Point (pI)

45.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3537 PF12056 3 - 106 3.9e-33 Protein of unknown function (DUF3537)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012910)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21080
fragaria_vesca FvH4_2g36520
malus_domestica MD08G1125000.v1.1 MD15G1104300.v1.1 MD15G1104400.v1.1 MD15G1104600.v1.1
prunus_persica Prupe.1G456600_v2.0.a1
pyrus_communis pycom08g10370
rosa_chinensis RchiOBHm_Chr6g0305351
rosa_laevigata RLG00000010897
rosa_multiflora Rmu_ssc0000148.1_g000004
rosa_roxburghii Rroxscaffold_7G00162880
rosa_rugosa Rorug06G0339800
rosa_samantha Rh6AG451500 Rh6BG450000 Rh6CG465600 Rh6DG452300
rosa_wichuraiana Rw6G039340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 79
AciI CCGC 1 cut(s) 194
AclWI GGATC 2 cut(s) 97, 269
AcuI CTGAAG 1 cut(s) 168
AcyI GRCGYC 1 cut(s) 139
AfiI CCNNNNNNNGG 1 cut(s) 86
AgsI TTSAA 1 cut(s) 215
AjnI CCWGG 1 cut(s) 218
AluBI AGCT 3 cut(s) 29, 123, 227
AluI AGCT 3 cut(s) 29, 123, 227
Alw21I GWGCWC 2 cut(s) 31, 345
AlwI GGATC 2 cut(s) 97, 269
ApeKI GCWGC 1 cut(s) 8
AspLEI GCGC 1 cut(s) 283
BanII GRGCYC 1 cut(s) 31
Bbv12I GWGCWC 2 cut(s) 31, 345
BbvI GCAGC 1 cut(s) 20
BccI CCATC 1 cut(s) 51
BceAI ACGGC 1 cut(s) 126
BciT130I CCWGG 1 cut(s) 220
BisI GCNGC 1 cut(s) 9
BlpI GCTNAGC 1 cut(s) 344
BlsI GCNGC 1 cut(s) 10
Bme1390I CCNGG 1 cut(s) 220
BmiI GGNNCC 1 cut(s) 201
BmrFI CCNGG 1 cut(s) 220
BplI GAGNNNNNCTC 4 cut(s) 140, 172, 191, 223
Bpu1102I GCTNAGC 1 cut(s) 344
BpuEI CTTGAG 1 cut(s) 15
BsaHI GRCGYC 1 cut(s) 139
BsaJI CCNNGG 1 cut(s) 142
Bsc4I CCNNNNNNNGG 1 cut(s) 86
Bse118I RCCGGY 1 cut(s) 111
BseBI CCWGG 1 cut(s) 220
BseDI CCNNGG 1 cut(s) 142
BseLI CCNNNNNNNGG 1 cut(s) 86
BseMII CTCAG 1 cut(s) 358
BseXI GCAGC 1 cut(s) 20
BsiHKAI GWGCWC 2 cut(s) 31, 345
BsiSI CCGG 2 cut(s) 87, 112
BslI CCNNNNNNNGG 1 cut(s) 86
Bsp1286I GDGCHC 2 cut(s) 31, 345
Bsp143I GATC 3 cut(s) 89, 261, 286
Bsp1720I GCTNAGC 1 cut(s) 344
BspACI CCGC 1 cut(s) 194
BspCNI CTCAG 1 cut(s) 357
BspLI GGNNCC 1 cut(s) 201
BspPI GGATC 2 cut(s) 97, 269
BsrFI RCCGGY 1 cut(s) 111
BssAI RCCGGY 1 cut(s) 111
BssECI CCNNGG 1 cut(s) 142
BssMI GATC 3 cut(s) 89, 261, 286
BssNI GRCGYC 1 cut(s) 139
Bst2UI CCWGG 1 cut(s) 220
BstACI GRCGYC 1 cut(s) 139
BstC8I GCNNGC 2 cut(s) 113, 225
BstDEI CTNAG 1 cut(s) 344
BstDSI CCRYGG 1 cut(s) 142
BstHHI GCGC 1 cut(s) 283
BstKTI GATC 3 cut(s) 92, 264, 289
BstMBI GATC 3 cut(s) 89, 261, 286
BstMWI GCNNNNNNNGC 2 cut(s) 233, 340
BstNI CCWGG 1 cut(s) 220
BstNSI RCATGY 1 cut(s) 67
BstSCI CCNGG 1 cut(s) 218
BstV1I GCAGC 1 cut(s) 20
BtgI CCRYGG 1 cut(s) 142
BtsI GCAGTG 1 cut(s) 107
BtsIMutI CAGTG 1 cut(s) 107
Cac8I GCNNGC 2 cut(s) 113, 225
CfoI GCGC 1 cut(s) 283
Cfr10I RCCGGY 1 cut(s) 111
CseI GACGC 1 cut(s) 147
CviAII CATG 1 cut(s) 64
CviJI RGCY 5 cut(s) 29, 111, 123, 202, 227
CviKI_1 RGCY 5 cut(s) 29, 111, 123, 202, 227
DdeI CTNAG 1 cut(s) 344
DpnI GATC 3 cut(s) 91, 263, 288
DpnII GATC 3 cut(s) 89, 261, 286
DrdI GACNNNNNNGTC 1 cut(s) 79
DseDI GACNNNNNNGTC 1 cut(s) 79
Ecl136II GAGCTC 1 cut(s) 29
Eco24I GRGCYC 1 cut(s) 31
Eco53kI GAGCTC 1 cut(s) 29
Eco57I CTGAAG 1 cut(s) 168
EcoICRI GAGCTC 1 cut(s) 29
EcoRII CCWGG 1 cut(s) 218
EcoT38I GRGCYC 1 cut(s) 31
FaeI CATG 1 cut(s) 67
FaiI YATR 3 cut(s) 24, 65, 273
FatI CATG 1 cut(s) 63
Fnu4HI GCNGC 1 cut(s) 9
FriOI GRGCYC 1 cut(s) 31
Fsp4HI GCNGC 1 cut(s) 9
GlaI GCGC 1 cut(s) 282
GluI GCNGC 1 cut(s) 9
HapII CCGG 2 cut(s) 87, 112
HgaI GACGC 1 cut(s) 147
HhaI GCGC 1 cut(s) 283
Hin1I GRCGYC 1 cut(s) 139
Hin1II CATG 1 cut(s) 67
Hin6I GCGC 1 cut(s) 281
HinP1I GCGC 1 cut(s) 281
HinfI GANTC 2 cut(s) 155, 244
HpaII CCGG 2 cut(s) 87, 112
Hpy188I TCNGA 3 cut(s) 94, 160, 172
Hpy188III TCNNGA 2 cut(s) 70, 366
HpyAV CCTTC 1 cut(s) 213
HpyCH4V TGCA 2 cut(s) 50, 314
HpyF10VI GCNNNNNNNGC 2 cut(s) 233, 340
HpyF3I CTNAG 1 cut(s) 344
Hsp92I GRCGYC 1 cut(s) 139
Hsp92II CATG 1 cut(s) 67
HspAI GCGC 1 cut(s) 281
KroI GCCGGC 1 cut(s) 111
KroNI GCCGGC 1 cut(s) 113
Kzo9I GATC 3 cut(s) 89, 261, 286
LmnI GCTCC 1 cut(s) 199
LpnPI CCDG 8 cut(s) 100, 110, 125, 182, 205, 215, 232, 314
Lsp1109I GCAGC 1 cut(s) 20
MaeIII GTNAC 2 cut(s) 152, 245
MalI GATC 3 cut(s) 91, 263, 288
MboI GATC 3 cut(s) 89, 261, 286
MfeI CAATTG 1 cut(s) 45
MhlI GDGCHC 2 cut(s) 31, 345
MluCI AATT 2 cut(s) 15, 45
MlyI GAGTC 2 cut(s) 149, 253
MnlI CCTC 3 cut(s) 201, 217, 251
MroNI GCCGGC 1 cut(s) 111
MspI CCGG 2 cut(s) 87, 112
MspR9I CCNGG 1 cut(s) 220
MunI CAATTG 1 cut(s) 45
MvaI CCWGG 1 cut(s) 220
MwoI GCNNNNNNNGC 2 cut(s) 233, 340
NaeI GCCGGC 1 cut(s) 113
NdeII GATC 3 cut(s) 89, 261, 286
NgoMIV GCCGGC 1 cut(s) 111
NlaIII CATG 1 cut(s) 67
NlaIV GGNNCC 1 cut(s) 201
NmuCI GTSAC 2 cut(s) 152, 245
NspI RCATGY 1 cut(s) 67
PdiI GCCGGC 1 cut(s) 113
PkrI GCNGC 1 cut(s) 10
PleI GAGTC 2 cut(s) 149, 252
PpsI GAGTC 2 cut(s) 149, 252
Psp124BI GAGCTC 1 cut(s) 31
Psp6I CCWGG 1 cut(s) 218
PspGI CCWGG 1 cut(s) 218
PspN4I GGNNCC 1 cut(s) 201
SacI GAGCTC 1 cut(s) 31
SatI GCNGC 1 cut(s) 9
Sau3AI GATC 3 cut(s) 89, 261, 286
SchI GAGTC 2 cut(s) 149, 253
ScrFI CCNGG 1 cut(s) 220
SduI GDGCHC 2 cut(s) 31, 345
SetI ASST 3 cut(s) 31, 125, 229
SmlI CTYRAG 1 cut(s) 30
SmoI CTYRAG 1 cut(s) 30
Sse9I AATT 2 cut(s) 15, 45
SsiI CCGC 1 cut(s) 194
SstI GAGCTC 1 cut(s) 31
StyD4I CCNGG 1 cut(s) 218
TasI AATT 2 cut(s) 15, 45
TscAI CASTG 1 cut(s) 107
TseFI GTSAC 2 cut(s) 152, 245
TseI GCWGC 1 cut(s) 8
Tsp45I GTSAC 2 cut(s) 152, 245
TspDTI ATGAA 1 cut(s) 156
TspGWI ACGGA 2 cut(s) 69, 270
TspRI CASTG 1 cut(s) 107
XceI RCATGY 1 cut(s) 67
XcmI CCANNNNNNNNNTGG 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.