AT2G21180

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0010959
Physical Location & Seq
Reverse (-)
9074660 .. 9075631
972 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G21180.1

Sequence Viewer

Length: 396 bp
ATGGCTTATGAAGAGAGAAGATCATCGATCCTGGATTCATTCTCGCTATCGCCACTACCATACCCAGTTCTTTTGATCCTAGCCGTTGCTTCAGTGTTCTTGTTGAGTTCATGGTACTTCAGCTTGGAAGAAGCAGCCGAATCAGCGGAAGAGCAGATAAATTTTGCGCTTCTCTTGATTCCTCTGTTTCTTATAGTCTTGGTCCGGTGGTTATCTTCCATGGAGAACCCTGATGCGCTTCTCGGGATGTTTTCAAGCAGTCGTCGGACAACTTACGTGAGTCCCGGAGCCGGAGGTGACGGTGGAAGCTCGCCGTGGGGAGTGGCGGCGTTGATAGTTTTGTTGCTTGTATTGCTTCAGTATCAATCAAGTTTCTTGGAGATGTGGTCTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.38

Weight (kDa)

4.23

Isoelectric Point (pI)

70.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 146, 326
AclWI GGATC 2 cut(s) 22, 70
AcsI RAATTY 1 cut(s) 160
AcuI CTGAAG 3 cut(s) 75, 103, 341
AfaI GTAC 1 cut(s) 116
AfiI CCNNNNNNNGG 1 cut(s) 290
AgsI TTSAA 1 cut(s) 255
AjnI CCWGG 1 cut(s) 30
AluBI AGCT 2 cut(s) 123, 309
AluI AGCT 2 cut(s) 123, 309
AlwI GGATC 2 cut(s) 22, 70
Ama87I CYCGRG 1 cut(s) 242
ApeKI GCWGC 1 cut(s) 134
ApoI RAATTY 1 cut(s) 160
AspLEI GCGC 2 cut(s) 169, 238
AspS9I GGNCC 1 cut(s) 202
AsuC2I CCSGG 1 cut(s) 285
AsuHPI GGTGA 1 cut(s) 308
AvaI CYCGRG 1 cut(s) 242
AvaII GGWCC 1 cut(s) 202
BbvI GCAGC 1 cut(s) 146
BceAI ACGGC 2 cut(s) 68, 298
BciT130I CCWGG 1 cut(s) 32
BcnI CCSGG 1 cut(s) 285
BfaI CTAG 1 cut(s) 80
BisI GCNGC 2 cut(s) 135, 327
BlsI GCNGC 2 cut(s) 136, 328
Bme1390I CCNGG 2 cut(s) 32, 285
Bme18I GGWCC 1 cut(s) 202
BmeT110I CYCGRG 1 cut(s) 242
BmgT120I GGNCC 1 cut(s) 202
BmiI GGNNCC 1 cut(s) 289
BmrFI CCNGG 2 cut(s) 32, 285
BmrI ACTGGG 1 cut(s) 59
BmsI GCATC 1 cut(s) 223
BmuI ACTGGG 1 cut(s) 59
BpuMI CCSGG 1 cut(s) 285
Bsa29I ATCGAT 1 cut(s) 26
BsaAI YACGTR 1 cut(s) 277
BsaJI CCNNGG 2 cut(s) 219, 314
BsaWI WCCGGW 1 cut(s) 204
BsaXI ACNNNNNCTCC 1 cut(s) 371
Bsc4I CCNNNNNNNGG 1 cut(s) 290
Bse1I ACTGG 1 cut(s) 65
BseBI CCWGG 1 cut(s) 32
BseCI ATCGAT 1 cut(s) 26
BseDI CCNNGG 2 cut(s) 219, 314
BseGI GGATG 1 cut(s) 252
BseLI CCNNNNNNNGG 1 cut(s) 290
BseNI ACTGG 1 cut(s) 65
BseXI GCAGC 1 cut(s) 146
BshVI ATCGAT 1 cut(s) 26
BsiHKCI CYCGRG 1 cut(s) 242
BsiSI CCGG 3 cut(s) 205, 285, 291
BslFI GGGAC 1 cut(s) 267
BslI CCNNNNNNNGG 1 cut(s) 290
BsmFI GGGAC 1 cut(s) 267
BsoBI CYCGRG 1 cut(s) 242
Bsp143I GATC 3 cut(s) 20, 27, 75
Bsp19I CCATGG 1 cut(s) 219
BspACI CCGC 2 cut(s) 146, 326
BspDI ATCGAT 1 cut(s) 26
BspLI GGNNCC 1 cut(s) 289
BspPI GGATC 2 cut(s) 22, 70
BspQI GCTCTTC 1 cut(s) 144
BsrI ACTGG 1 cut(s) 65
BssECI CCNNGG 2 cut(s) 219, 314
BssMI GATC 3 cut(s) 20, 27, 75
BssT1I CCWWGG 1 cut(s) 219
Bst2UI CCWGG 1 cut(s) 32
Bst4CI ACNGT 1 cut(s) 302
Bst6I CTCTTC 2 cut(s) 6, 144
BstBAI YACGTR 1 cut(s) 277
BstC8I GCNNGC 1 cut(s) 311
BstDSI CCRYGG 2 cut(s) 219, 314
BstF5I GGATG 1 cut(s) 252
BstHHI GCGC 2 cut(s) 169, 238
BstKTI GATC 3 cut(s) 23, 30, 78
BstMBI GATC 3 cut(s) 20, 27, 75
BstMWI GCNNNNNNNGC 2 cut(s) 143, 352
BstNI CCWGG 1 cut(s) 32
BstSCI CCNGG 2 cut(s) 30, 283
BstV1I GCAGC 1 cut(s) 146
Bsu15I ATCGAT 1 cut(s) 26
BsuTUI ATCGAT 1 cut(s) 26
BtgI CCRYGG 2 cut(s) 219, 314
BtsCI GGATG 1 cut(s) 252
BtsIMutI CAGTG 1 cut(s) 99
Cac8I GCNNGC 1 cut(s) 311
CfoI GCGC 2 cut(s) 169, 238
Cfr13I GGNCC 1 cut(s) 202
ClaI ATCGAT 1 cut(s) 26
Csp6I GTAC 1 cut(s) 115
CviAII CATG 2 cut(s) 111, 220
CviJI RGCY 6 cut(s) 5, 83, 123, 137, 290, 309
CviKI_1 RGCY 6 cut(s) 5, 83, 123, 137, 290, 309
CviQI GTAC 1 cut(s) 115
DpnI GATC 3 cut(s) 22, 29, 77
DpnII GATC 3 cut(s) 20, 27, 75
Eam1104I CTCTTC 2 cut(s) 6, 144
EarI CTCTTC 2 cut(s) 6, 144
Eco130I CCWWGG 1 cut(s) 219
Eco47I GGWCC 1 cut(s) 202
Eco57I CTGAAG 3 cut(s) 75, 103, 341
Eco88I CYCGRG 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 30
EcoT14I CCWWGG 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 2 cut(s) 114, 223
FaiI YATR 5 cut(s) 9, 61, 112, 194, 221
FaqI GGGAC 1 cut(s) 267
FatI CATG 2 cut(s) 110, 219
Fnu4HI GCNGC 2 cut(s) 135, 327
FokI GGATG 1 cut(s) 259
Fsp4HI GCNGC 2 cut(s) 135, 327
FspBI CTAG 1 cut(s) 80
GlaI GCGC 2 cut(s) 168, 237
GluI GCNGC 2 cut(s) 135, 327
HapII CCGG 3 cut(s) 205, 285, 291
HhaI GCGC 2 cut(s) 169, 238
Hin1II CATG 2 cut(s) 114, 223
Hin6I GCGC 2 cut(s) 167, 236
HinP1I GCGC 2 cut(s) 167, 236
HinfI GANTC 4 cut(s) 35, 140, 178, 280
HpaII CCGG 3 cut(s) 205, 285, 291
HphI GGTGA 1 cut(s) 308
Hpy188I TCNGA 1 cut(s) 267
Hpy188III TCNNGA 2 cut(s) 175, 244
Hpy99I CGWCG 1 cut(s) 267
HpyCH4III ACNGT 1 cut(s) 302
HpyCH4IV ACGT 1 cut(s) 276
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 352
HpySE526I ACGT 1 cut(s) 276
Hsp92II CATG 2 cut(s) 114, 223
HspAI GCGC 2 cut(s) 167, 236
Kzo9I GATC 3 cut(s) 20, 27, 75
LguI GCTCTTC 1 cut(s) 144
LmnI GCTCC 1 cut(s) 287
LpnPI CCDG 8 cut(s) 17, 44, 78, 218, 243, 298, 304, 375
Lsp1109I GCAGC 1 cut(s) 146
LweI GCATC 1 cut(s) 223
MaeI CTAG 1 cut(s) 80
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 1 cut(s) 296
MalI GATC 3 cut(s) 22, 29, 77
MboI GATC 3 cut(s) 20, 27, 75
MboII GAAGA 5 cut(s) 23, 30, 140, 161, 207
MluCI AATT 1 cut(s) 160
MlyI GAGTC 1 cut(s) 289
MmeI TCCRAC 1 cut(s) 245
MnlI CCTC 2 cut(s) 192, 287
MseI TTAA 1 cut(s) 394
MspA1I CMGCKG 1 cut(s) 146
MspI CCGG 3 cut(s) 205, 285, 291
MspR9I CCNGG 2 cut(s) 32, 285
MvaI CCWGG 1 cut(s) 32
MwoI GCNNNNNNNGC 2 cut(s) 143, 352
NciI CCSGG 1 cut(s) 285
NcoI CCATGG 1 cut(s) 219
NdeII GATC 3 cut(s) 20, 27, 75
NlaIII CATG 2 cut(s) 114, 223
NlaIV GGNNCC 1 cut(s) 289
NmuCI GTSAC 1 cut(s) 296
PciSI GCTCTTC 1 cut(s) 144
PfeI GAWTC 3 cut(s) 35, 140, 178
PfoI TCCNGGA 2 cut(s) 30, 283
PkrI GCNGC 2 cut(s) 136, 328
PleI GAGTC 1 cut(s) 288
PpsI GAGTC 1 cut(s) 288
Ppu21I YACGTR 1 cut(s) 277
Psp6I CCWGG 1 cut(s) 30
PspGI CCWGG 1 cut(s) 30
PspN4I GGNNCC 1 cut(s) 289
PspPI GGNCC 1 cut(s) 202
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
SapI GCTCTTC 1 cut(s) 144
SaqAI TTAA 1 cut(s) 394
SatI GCNGC 2 cut(s) 135, 327
Sau3AI GATC 3 cut(s) 20, 27, 75
Sau96I GGNCC 1 cut(s) 202
SchI GAGTC 1 cut(s) 289
ScrFI CCNGG 2 cut(s) 32, 285
SetI ASST 4 cut(s) 125, 279, 298, 311
SfaNI GCATC 1 cut(s) 223
SinI GGWCC 1 cut(s) 202
Sse9I AATT 1 cut(s) 160
SsiI CCGC 2 cut(s) 146, 326
SspMI CTAG 1 cut(s) 80
StyD4I CCNGG 2 cut(s) 30, 283
StyI CCWWGG 1 cut(s) 219
TaaI ACNGT 1 cut(s) 302
TaiI ACGT 1 cut(s) 279
TaqI TCGA 1 cut(s) 26
TasI AATT 1 cut(s) 160
TauI GCSGC 1 cut(s) 329
TfiI GAWTC 3 cut(s) 35, 140, 178
Tru1I TTAA 1 cut(s) 394
Tru9I TTAA 1 cut(s) 394
TscAI CASTG 1 cut(s) 99
TseFI GTSAC 1 cut(s) 296
TseI GCWGC 1 cut(s) 134
Tsp45I GTSAC 1 cut(s) 296
TspDTI ATGAA 3 cut(s) 24, 27, 99
TspRI CASTG 1 cut(s) 99
VpaK11BI GGWCC 1 cut(s) 202
XapI RAATTY 1 cut(s) 160
XspI CTAG 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.