Prupe.8G160100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0010959
Physical Location & Seq
Forward (+)
16895417 .. 16896512
1096 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G160100.1

Sequence Viewer

Length: 393 bp
ATGGCCTATGGACGAAGCCCAACCAGCTCTTTCATAGAAGGGTTCTCTCTAAGTCCTCTGCCATATCCAGTTCTGCTAATTCTTGCAGTAATCTCAATCTTTTTTGGCATATCCTGGTACTCATCCCATGACTCAGTTGTGGAAGAAGCTGAAACGCAATTCAGTTGGCTGCTTTTGTTTACAGCAATAGCACTTCTGCTTCTTGTTAAGTTGCTGTCTTTTCTGGATCCTGATTGGTTCTTCTCCTTGTTTCCATGGGGAAGCCGCAGGATAGCCTACCATGAACCTTCAGAGGGAAGCTCACCATGGGGTGTTGCTGCTTTCATTGTGCTCCTGCTAGTTTTGCTGCAATACCAGTCTATTTTCCGGGACAGCTGGCTCATTAAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.81

Weight (kDa)

5.16

Isoelectric Point (pI)

55.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 265
AclWI GGATC 2 cut(s) 221, 234
AcuI CTGAAG 1 cut(s) 273
AfaI GTAC 1 cut(s) 119
AfiI CCNNNNNNNGG 1 cut(s) 293
AjnI CCWGG 1 cut(s) 113
AluBI AGCT 4 cut(s) 27, 149, 300, 375
AluI AGCT 4 cut(s) 27, 149, 300, 375
Alw21I GWGCWC 1 cut(s) 333
AlwI GGATC 2 cut(s) 221, 234
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 3 cut(s) 169, 317, 346
AsuC2I CCSGG 1 cut(s) 368
AsuHPI GGTGA 1 cut(s) 294
BamHI GGATCC 1 cut(s) 226
Bbv12I GWGCWC 1 cut(s) 333
BbvI GCAGC 3 cut(s) 156, 304, 333
BciT130I CCWGG 1 cut(s) 115
BcnI CCSGG 1 cut(s) 368
BfaI CTAG 1 cut(s) 338
BisI GCNGC 4 cut(s) 170, 265, 318, 347
BlsI GCNGC 4 cut(s) 171, 266, 319, 348
Bme1390I CCNGG 2 cut(s) 115, 368
BmiI GGNNCC 1 cut(s) 228
BmrFI CCNGG 2 cut(s) 115, 368
BplI GAGNNNNNCTC 2 cut(s) 284, 316
BpuMI CCSGG 1 cut(s) 368
BsaJI CCNNGG 2 cut(s) 254, 305
Bsc4I CCNNNNNNNGG 1 cut(s) 293
Bse1I ACTGG 2 cut(s) 68, 355
BseBI CCWGG 1 cut(s) 115
BseDI CCNNGG 2 cut(s) 254, 305
BseGI GGATG 1 cut(s) 122
BseLI CCNNNNNNNGG 1 cut(s) 293
BseMII CTCAG 1 cut(s) 147
BseNI ACTGG 2 cut(s) 68, 355
BseXI GCAGC 3 cut(s) 156, 304, 333
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 333
BsiSI CCGG 1 cut(s) 367
BslFI GGGAC 1 cut(s) 383
BslI CCNNNNNNNGG 1 cut(s) 293
BsmFI GGGAC 1 cut(s) 383
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 333
Bsp143I GATC 1 cut(s) 226
Bsp19I CCATGG 2 cut(s) 254, 305
BspACI CCGC 1 cut(s) 265
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 146
BspLI GGNNCC 1 cut(s) 228
BspPI GGATC 2 cut(s) 221, 234
BsrI ACTGG 2 cut(s) 68, 355
BssECI CCNNGG 2 cut(s) 254, 305
BssMI GATC 1 cut(s) 226
BssT1I CCWWGG 2 cut(s) 254, 305
Bst2UI CCWGG 1 cut(s) 115
BstC8I GCNNGC 1 cut(s) 377
BstDEI CTNAG 2 cut(s) 50, 133
BstDSI CCRYGG 2 cut(s) 254, 305
BstF5I GGATG 1 cut(s) 122
BstKTI GATC 1 cut(s) 229
BstMBI GATC 1 cut(s) 226
BstMWI GCNNNNNNNGC 2 cut(s) 24, 343
BstNI CCWGG 1 cut(s) 115
BstSCI CCNGG 2 cut(s) 113, 366
BstV1I GCAGC 3 cut(s) 156, 304, 333
BstX2I RGATCY 1 cut(s) 226
BstYI RGATCY 1 cut(s) 226
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 2 cut(s) 254, 305
BtsCI GGATG 1 cut(s) 122
Cac8I GCNNGC 1 cut(s) 377
Csp6I GTAC 1 cut(s) 118
CviAII CATG 4 cut(s) 128, 255, 281, 306
CviQI GTAC 1 cut(s) 118
DdeI CTNAG 2 cut(s) 50, 133
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
Eco130I CCWWGG 2 cut(s) 254, 305
Eco57I CTGAAG 1 cut(s) 273
EcoRII CCWGG 1 cut(s) 113
EcoT14I CCWWGG 2 cut(s) 254, 305
ErhI CCWWGG 2 cut(s) 254, 305
FaeI CATG 4 cut(s) 131, 258, 284, 309
FaiI YATR 8 cut(s) 9, 35, 64, 110, 129, 256, 282, 307
FaqI GGGAC 1 cut(s) 383
FatI CATG 4 cut(s) 127, 254, 280, 305
Fnu4HI GCNGC 4 cut(s) 170, 265, 318, 347
FokI GGATG 1 cut(s) 109
Fsp4HI GCNGC 4 cut(s) 170, 265, 318, 347
FspBI CTAG 1 cut(s) 338
GluI GCNGC 4 cut(s) 170, 265, 318, 347
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 367
Hin1II CATG 4 cut(s) 131, 258, 284, 309
HinfI GANTC 1 cut(s) 131
HpaII CCGG 1 cut(s) 367
HphI GGTGA 1 cut(s) 294
Hpy166II GTNNAC 1 cut(s) 180
Hpy188I TCNGA 1 cut(s) 292
Hpy188III TCNNGA 2 cut(s) 224, 230
Hpy8I GTNNAC 1 cut(s) 180
HpyAV CCTTC 2 cut(s) 32, 297
HpyCH4V TGCA 2 cut(s) 86, 349
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 343
HpyF3I CTNAG 2 cut(s) 50, 133
Hsp92II CATG 4 cut(s) 131, 258, 284, 309
Kzo9I GATC 1 cut(s) 226
LmnI GCTCC 1 cut(s) 336
Lsp1109I GCAGC 3 cut(s) 156, 304, 333
MaeI CTAG 1 cut(s) 338
MalI GATC 1 cut(s) 228
MboI GATC 1 cut(s) 226
MboII GAAGA 2 cut(s) 155, 232
MflI RGATCY 1 cut(s) 226
MhlI GDGCHC 1 cut(s) 333
MluCI AATT 2 cut(s) 78, 158
MlyI GAGTC 1 cut(s) 125
MnlI CCTC 2 cut(s) 66, 286
MseI TTAA 2 cut(s) 207, 384
MspA1I CMGCKG 1 cut(s) 375
MspI CCGG 1 cut(s) 367
MspR9I CCNGG 2 cut(s) 115, 368
MvaI CCWGG 1 cut(s) 115
MwoI GCNNNNNNNGC 2 cut(s) 24, 343
NciI CCSGG 1 cut(s) 368
NcoI CCATGG 2 cut(s) 254, 305
NdeII GATC 1 cut(s) 226
NlaIII CATG 4 cut(s) 131, 258, 284, 309
NlaIV GGNNCC 1 cut(s) 228
PfoI TCCNGGA 1 cut(s) 366
PkrI GCNGC 4 cut(s) 171, 266, 319, 348
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
Psp6I CCWGG 1 cut(s) 113
PspGI CCWGG 1 cut(s) 113
PspN4I GGNNCC 1 cut(s) 228
PsuI RGATCY 1 cut(s) 226
PvuII CAGCTG 1 cut(s) 375
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
SaqAI TTAA 2 cut(s) 207, 384
SatI GCNGC 4 cut(s) 170, 265, 318, 347
Sau3AI GATC 1 cut(s) 226
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 2 cut(s) 115, 368
SduI GDGCHC 1 cut(s) 333
SetI ASST 5 cut(s) 29, 151, 289, 302, 377
Sse9I AATT 2 cut(s) 78, 158
SsiI CCGC 1 cut(s) 265
SspMI CTAG 1 cut(s) 338
StyD4I CCNGG 2 cut(s) 113, 366
StyI CCWWGG 2 cut(s) 254, 305
TasI AATT 2 cut(s) 78, 158
TauI GCSGC 1 cut(s) 267
Tru1I TTAA 2 cut(s) 207, 384
Tru9I TTAA 2 cut(s) 207, 384
TseI GCWGC 3 cut(s) 169, 317, 346
TspDTI ATGAA 3 cut(s) 22, 297, 313
XspI CTAG 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.