pycom10g10180

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0010959
Physical Location & Seq
Forward (+)
13471189 .. 13471578
390 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g10180.1

Sequence Viewer

Length: 390 bp
ATGTCTTATTATGGAAAAACCCCAACCAGCTCCTTCTTAGAAGGGTTTTCTTTAAGTCCTCTGCCCTACCCAGTTCTCCTAATCCTAGCAGTACTCTCCATCTTCTTAGGCATCTCATGGTACTCCTCCATTGAGTCAGTTGTGGACAAAGTTGGAGTGCAATTCAATTGGGTGTTTTTGCTCACACCAGTAGTTCTCATCCTCATTGTGAAGGGGCTCTCATATATGGATCCTGATTGGCTCTTCTCCATGTCGATGTGGGAACAACGCCAGAGGACTCACCATATACCTTCAGAAGGAAGCTCACCTTGGGGTGTTGCTGCTTTCATTGTGCTCTTACTTGTTTTGCTGAATTACCAGTCAGTTTTTCGTGATAGTTGGCTCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.73

Weight (kDa)

5.47

Isoelectric Point (pI)

50.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 224, 237
AcuI CTGAAG 1 cut(s) 276
AfaI GTAC 2 cut(s) 93, 122
AfiI CCNNNNNNNGG 1 cut(s) 296
AgsI TTSAA 1 cut(s) 166
AjuI GAANNNNNNNTTGG 2 cut(s) 292, 324
AluBI AGCT 2 cut(s) 30, 303
AluI AGCT 2 cut(s) 30, 303
Alw21I GWGCWC 1 cut(s) 336
AlwI GGATC 2 cut(s) 224, 237
ApeKI GCWGC 1 cut(s) 320
AsuHPI GGTGA 2 cut(s) 272, 297
BamHI GGATCC 1 cut(s) 229
BanII GRGCYC 1 cut(s) 219
Bbv12I GWGCWC 1 cut(s) 336
BbvI GCAGC 1 cut(s) 307
BccI CCATC 1 cut(s) 107
BfaI CTAG 1 cut(s) 86
BisI GCNGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 322
BmcAI AGTACT 1 cut(s) 93
BmiI GGNNCC 1 cut(s) 231
BmrI ACTGGG 1 cut(s) 65
BmsI GCATC 1 cut(s) 120
BmuI ACTGGG 1 cut(s) 65
BsaJI CCNNGG 1 cut(s) 308
Bsc4I CCNNNNNNNGG 1 cut(s) 296
Bse1I ACTGG 3 cut(s) 71, 188, 358
BseDI CCNNGG 1 cut(s) 308
BseGI GGATG 1 cut(s) 198
BseLI CCNNNNNNNGG 1 cut(s) 296
BseNI ACTGG 3 cut(s) 71, 188, 358
BseRI GAGGAG 1 cut(s) 115
BseXI GCAGC 1 cut(s) 307
BsiHKAI GWGCWC 1 cut(s) 336
BslI CCNNNNNNNGG 1 cut(s) 296
Bsp1286I GDGCHC 2 cut(s) 219, 336
Bsp143I GATC 1 cut(s) 229
BspLI GGNNCC 1 cut(s) 231
BspPI GGATC 2 cut(s) 224, 237
BspQI GCTCTTC 1 cut(s) 248
BsrI ACTGG 3 cut(s) 71, 188, 358
BssECI CCNNGG 1 cut(s) 308
BssMI GATC 1 cut(s) 229
BssT1I CCWWGG 1 cut(s) 308
Bst6I CTCTTC 1 cut(s) 248
BstDEI CTNAG 2 cut(s) 37, 106
BstENI CCTNNNNNAGG 1 cut(s) 294
BstF5I GGATG 1 cut(s) 198
BstKTI GATC 1 cut(s) 232
BstMBI GATC 1 cut(s) 229
BstV1I GCAGC 1 cut(s) 307
BstX2I RGATCY 1 cut(s) 229
BstYI RGATCY 1 cut(s) 229
BtsCI GGATG 1 cut(s) 198
Csp6I GTAC 2 cut(s) 92, 121
CviAII CATG 2 cut(s) 117, 250
CviJI RGCY 5 cut(s) 30, 217, 241, 303, 382
CviKI_1 RGCY 5 cut(s) 30, 217, 241, 303, 382
CviQI GTAC 2 cut(s) 92, 121
DdeI CTNAG 2 cut(s) 37, 106
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
Eam1104I CTCTTC 1 cut(s) 248
EarI CTCTTC 1 cut(s) 248
Eco130I CCWWGG 1 cut(s) 308
Eco24I GRGCYC 1 cut(s) 219
Eco57I CTGAAG 1 cut(s) 276
EcoNI CCTNNNNNAGG 1 cut(s) 294
EcoT14I CCWWGG 1 cut(s) 308
EcoT38I GRGCYC 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 308
FaeI CATG 2 cut(s) 120, 253
FaiI YATR 8 cut(s) 12, 118, 223, 225, 227, 251, 285, 287
FalI AAGNNNNNCTT 2 cut(s) 292, 324
FatI CATG 2 cut(s) 116, 249
Fnu4HI GCNGC 1 cut(s) 321
FokI GGATG 1 cut(s) 185
FriOI GRGCYC 1 cut(s) 219
Fsp4HI GCNGC 1 cut(s) 321
FspBI CTAG 1 cut(s) 86
GluI GCNGC 1 cut(s) 321
Hin1II CATG 2 cut(s) 120, 253
HinfI GANTC 2 cut(s) 134, 277
HphI GGTGA 2 cut(s) 272, 297
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 1 cut(s) 295
Hpy188III TCNNGA 2 cut(s) 233, 371
Hpy8I GTNNAC 1 cut(s) 145
HpyAV CCTTC 5 cut(s) 35, 43, 205, 290, 300
HpyCH4V TGCA 1 cut(s) 160
HpyF3I CTNAG 2 cut(s) 37, 106
Hsp92II CATG 2 cut(s) 120, 253
Kzo9I GATC 1 cut(s) 229
LguI GCTCTTC 1 cut(s) 248
LmnI GCTCC 1 cut(s) 35
LpnPI CCDG 6 cut(s) 40, 84, 201, 246, 284, 371
Lsp1109I GCAGC 1 cut(s) 307
LweI GCATC 1 cut(s) 120
MaeI CTAG 1 cut(s) 86
MalI GATC 1 cut(s) 231
MboI GATC 1 cut(s) 229
MboII GAAGA 2 cut(s) 94, 235
MfeI CAATTG 1 cut(s) 166
MflI RGATCY 1 cut(s) 229
MhlI GDGCHC 2 cut(s) 219, 336
MluCI AATT 3 cut(s) 161, 166, 352
MlyI GAGTC 2 cut(s) 143, 271
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 4 cut(s) 69, 136, 212, 267
MseI TTAA 1 cut(s) 53
MslI CAYNNNNRTG 1 cut(s) 254
MunI CAATTG 1 cut(s) 166
NdeII GATC 1 cut(s) 229
NlaIII CATG 2 cut(s) 120, 253
NlaIV GGNNCC 1 cut(s) 231
PciSI GCTCTTC 1 cut(s) 248
PkrI GCNGC 1 cut(s) 322
PleI GAGTC 2 cut(s) 142, 271
PpsI GAGTC 2 cut(s) 142, 271
PspN4I GGNNCC 1 cut(s) 231
PsuI RGATCY 1 cut(s) 229
RsaI GTAC 2 cut(s) 93, 122
RsaNI GTAC 2 cut(s) 92, 121
RseI CAYNNNNRTG 1 cut(s) 254
SapI GCTCTTC 1 cut(s) 248
SaqAI TTAA 1 cut(s) 53
SatI GCNGC 1 cut(s) 321
Sau3AI GATC 1 cut(s) 229
ScaI AGTACT 1 cut(s) 93
SchI GAGTC 2 cut(s) 143, 271
SduI GDGCHC 2 cut(s) 219, 336
SetI ASST 4 cut(s) 32, 292, 305, 310
SfaNI GCATC 1 cut(s) 120
SmiMI CAYNNNNRTG 1 cut(s) 254
Sse9I AATT 3 cut(s) 161, 166, 352
SspMI CTAG 1 cut(s) 86
StyI CCWWGG 1 cut(s) 308
TaqI TCGA 1 cut(s) 254
TasI AATT 3 cut(s) 161, 166, 352
TatI WGTACW 1 cut(s) 91
Tru1I TTAA 1 cut(s) 53
Tru9I TTAA 1 cut(s) 53
TseI GCWGC 1 cut(s) 320
TspDTI ATGAA 1 cut(s) 316
XagI CCTNNNNNAGG 1 cut(s) 294
XspI CTAG 1 cut(s) 86
ZrmI AGTACT 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.