Prupe.8G160200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0010959
Physical Location & Seq
Forward (+)
16901173 .. 16901564
392 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G160200.1

Sequence Viewer

Length: 387 bp
ATGGCCTATGGAAGAAGCCAAACCAGCTCTTTCCTAGAAGGGTTCTCTCTAAGTCCTCTGCCATATCCAGTTCTGCTAATTCTTGCAGTAATCTCAATCTTTCTTGGCATATCCTGGTACTCATCCTATGACTCAGTTGTGGAAGAAGCTGAAACGCAATTCAATTGGTTGCTTTTTGTTACACCAATAGCACTTCTGCTTCTTGTTAAGTTGCTGTCTTCTATGGATCCTGATTGGCTCTTCTCCATGTCTCCACTGGGAAACCGCAGGAGAACCTACTATCCACCTTCGGAGGGAAGCTCACCATGGGGTGTTGCTGCTTTCATTGTGCTCCTGCTAGTTTTGCTGCAATACCAGTCTATTTTCAGGGACAGCTGGCTCATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.52

Weight (kDa)

4.61

Isoelectric Point (pI)

64.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 265
AclWI GGATC 2 cut(s) 221, 234
AfaI GTAC 1 cut(s) 119
AfiI CCNNNNNNNGG 1 cut(s) 293
AgsI TTSAA 1 cut(s) 163
AjnI CCWGG 1 cut(s) 113
AloI GAACNNNNNNTCC 2 cut(s) 265, 297
AluBI AGCT 4 cut(s) 27, 149, 300, 375
AluI AGCT 4 cut(s) 27, 149, 300, 375
Alw21I GWGCWC 1 cut(s) 333
Alw26I GTCTC 1 cut(s) 255
AlwI GGATC 2 cut(s) 221, 234
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 317, 346
AsuHPI GGTGA 1 cut(s) 294
BamHI GGATCC 1 cut(s) 226
BbsI GAAGAC 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 333
BbvI GCAGC 2 cut(s) 304, 333
BciT130I CCWGG 1 cut(s) 115
BcoDI GTCTC 1 cut(s) 255
BfaI CTAG 2 cut(s) 35, 338
BisI GCNGC 2 cut(s) 318, 347
BlsI GCNGC 2 cut(s) 319, 348
Bme1390I CCNGG 1 cut(s) 115
BmiI GGNNCC 1 cut(s) 228
BmrFI CCNGG 1 cut(s) 115
BmrI ACTGGG 1 cut(s) 266
BmuI ACTGGG 1 cut(s) 266
BpiI GAAGAC 1 cut(s) 210
BplI GAGNNNNNCTC 2 cut(s) 284, 316
BsaJI CCNNGG 1 cut(s) 305
Bsc4I CCNNNNNNNGG 1 cut(s) 293
Bse1I ACTGG 3 cut(s) 68, 261, 355
BseBI CCWGG 1 cut(s) 115
BseDI CCNNGG 1 cut(s) 305
BseGI GGATG 1 cut(s) 122
BseLI CCNNNNNNNGG 1 cut(s) 293
BseMII CTCAG 1 cut(s) 147
BseNI ACTGG 3 cut(s) 68, 261, 355
BseXI GCAGC 2 cut(s) 304, 333
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 333
BslFI GGGAC 1 cut(s) 383
BslI CCNNNNNNNGG 1 cut(s) 293
BsmAI GTCTC 1 cut(s) 255
BsmFI GGGAC 1 cut(s) 383
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 333
Bsp143I GATC 1 cut(s) 226
Bsp19I CCATGG 1 cut(s) 305
BspACI CCGC 1 cut(s) 265
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 146
BspLI GGNNCC 1 cut(s) 228
BspPI GGATC 2 cut(s) 221, 234
BspQI GCTCTTC 1 cut(s) 245
BsrI ACTGG 3 cut(s) 68, 261, 355
BssECI CCNNGG 1 cut(s) 305
BssMI GATC 1 cut(s) 226
BssT1I CCWWGG 1 cut(s) 305
Bst2UI CCWGG 1 cut(s) 115
Bst6I CTCTTC 1 cut(s) 245
BstC8I GCNNGC 1 cut(s) 377
BstDEI CTNAG 2 cut(s) 50, 133
BstDSI CCRYGG 1 cut(s) 305
BstF5I GGATG 1 cut(s) 122
BstKTI GATC 1 cut(s) 229
BstMAI GTCTC 1 cut(s) 255
BstMBI GATC 1 cut(s) 226
BstMWI GCNNNNNNNGC 2 cut(s) 24, 343
BstNI CCWGG 1 cut(s) 115
BstSCI CCNGG 1 cut(s) 113
BstV1I GCAGC 2 cut(s) 304, 333
BstV2I GAAGAC 1 cut(s) 210
BstX2I RGATCY 1 cut(s) 226
BstYI RGATCY 1 cut(s) 226
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 305
BtsCI GGATG 1 cut(s) 122
BtsIMutI CAGTG 1 cut(s) 254
Cac8I GCNNGC 1 cut(s) 377
Csp6I GTAC 1 cut(s) 118
CviAII CATG 2 cut(s) 247, 306
CviJI RGCY 8 cut(s) 5, 18, 27, 149, 238, 300, 375, 379
CviKI_1 RGCY 8 cut(s) 5, 18, 27, 149, 238, 300, 375, 379
CviQI GTAC 1 cut(s) 118
DdeI CTNAG 2 cut(s) 50, 133
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
Eam1104I CTCTTC 1 cut(s) 245
EarI CTCTTC 1 cut(s) 245
Eco130I CCWWGG 1 cut(s) 305
EcoRII CCWGG 1 cut(s) 113
EcoT14I CCWWGG 1 cut(s) 305
ErhI CCWWGG 1 cut(s) 305
FaeI CATG 2 cut(s) 250, 309
FaiI YATR 9 cut(s) 9, 64, 110, 129, 224, 248, 307, 383, 385
FaqI GGGAC 1 cut(s) 383
FatI CATG 2 cut(s) 246, 305
Fnu4HI GCNGC 2 cut(s) 318, 347
FokI GGATG 1 cut(s) 109
Fsp4HI GCNGC 2 cut(s) 318, 347
FspBI CTAG 2 cut(s) 35, 338
GluI GCNGC 2 cut(s) 318, 347
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 2 cut(s) 250, 309
HinfI GANTC 1 cut(s) 131
HphI GGTGA 1 cut(s) 294
Hpy188I TCNGA 1 cut(s) 292
Hpy188III TCNNGA 1 cut(s) 230
HpyAV CCTTC 2 cut(s) 32, 297
HpyCH4V TGCA 2 cut(s) 86, 349
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 343
HpyF3I CTNAG 2 cut(s) 50, 133
Hsp92II CATG 2 cut(s) 250, 309
Kzo9I GATC 1 cut(s) 226
LguI GCTCTTC 1 cut(s) 245
LmnI GCTCC 1 cut(s) 336
Lsp1109I GCAGC 2 cut(s) 304, 333
MaeI CTAG 2 cut(s) 35, 338
MaeIII GTNAC 1 cut(s) 178
MalI GATC 1 cut(s) 228
MboI GATC 1 cut(s) 226
MboII GAAGA 4 cut(s) 24, 155, 210, 232
MfeI CAATTG 1 cut(s) 163
MflI RGATCY 1 cut(s) 226
MhlI GDGCHC 1 cut(s) 333
MluCI AATT 3 cut(s) 78, 158, 163
MlyI GAGTC 1 cut(s) 125
MnlI CCTC 2 cut(s) 66, 286
MseI TTAA 1 cut(s) 207
MspA1I CMGCKG 1 cut(s) 375
MspR9I CCNGG 1 cut(s) 115
MunI CAATTG 1 cut(s) 163
MvaI CCWGG 1 cut(s) 115
MwoI GCNNNNNNNGC 2 cut(s) 24, 343
NcoI CCATGG 1 cut(s) 305
NdeII GATC 1 cut(s) 226
NlaIII CATG 2 cut(s) 250, 309
NlaIV GGNNCC 1 cut(s) 228
PciSI GCTCTTC 1 cut(s) 245
PkrI GCNGC 2 cut(s) 319, 348
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
Psp6I CCWGG 1 cut(s) 113
PspGI CCWGG 1 cut(s) 113
PspN4I GGNNCC 1 cut(s) 228
PsuI RGATCY 1 cut(s) 226
PvuII CAGCTG 1 cut(s) 375
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
SapI GCTCTTC 1 cut(s) 245
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 2 cut(s) 318, 347
Sau3AI GATC 1 cut(s) 226
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 1 cut(s) 115
SduI GDGCHC 1 cut(s) 333
SetI ASST 6 cut(s) 29, 151, 278, 289, 302, 377
Sse9I AATT 3 cut(s) 78, 158, 163
SsiI CCGC 1 cut(s) 265
SspMI CTAG 2 cut(s) 35, 338
StyD4I CCNGG 1 cut(s) 113
StyI CCWWGG 1 cut(s) 305
TasI AATT 3 cut(s) 78, 158, 163
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TscAI CASTG 1 cut(s) 261
TseI GCWGC 2 cut(s) 317, 346
TspDTI ATGAA 1 cut(s) 313
TspRI CASTG 1 cut(s) 261
XcmI CCANNNNNNNNNTGG 1 cut(s) 253
XspI CTAG 2 cut(s) 35, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.