RLG00000008495

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0010959
Physical Location & Seq
Reverse (-)
31299951 .. 31300340
390 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008495

Sequence Viewer

Length: 390 bp
ATGGCCTATGGAAGAAGAAACCAAACCTCTGCGCTCTTAGAAGGGTTCTCCCTAAACCCTTTACCCTACCCAGTTCTCATAATCCTTGCAGTACTCTCAGTCTTTCTGGGCTTCTCATGGTACTCCTCCTACGAGTCAGCTGTGGAAGAAGCTGAATCACAATTCAACTGGGTCCTTTTGGTCACACCAATAGTCCTACTTCTCATTGTTCAGTGGCTCTCATCTATGGAGCCGGATTGGCTCTTTGCCATGTCACCCTGGGAACAACGTCGTAGAACCCACAACCGTCCGTCGGAGGGGAGCTCACCGTGGGGTGTTGCTGCTGTCATTGTGCTCTTGCTGGTTCTGCTGCAGTTTCAGTCCATTTTCCGAGATAGCTGGCTTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.8

Weight (kDa)

4.97

Isoelectric Point (pI)

62.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 93, 122
AfiI CCNNNNNNNGG 2 cut(s) 292, 296
AgsI TTSAA 1 cut(s) 166
AjnI CCWGG 1 cut(s) 257
AluBI AGCT 4 cut(s) 140, 152, 303, 378
AluI AGCT 4 cut(s) 140, 152, 303, 378
Alw21I GWGCWC 2 cut(s) 305, 336
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 320, 349
AspLEI GCGC 1 cut(s) 34
AspS9I GGNCC 1 cut(s) 172
AsuHPI GGTGA 2 cut(s) 246, 297
AvaII GGWCC 1 cut(s) 172
BanII GRGCYC 1 cut(s) 305
Bbv12I GWGCWC 2 cut(s) 305, 336
BbvI GCAGC 2 cut(s) 307, 336
BciT130I CCWGG 1 cut(s) 259
BfmI CTRYAG 1 cut(s) 350
BglI GCCNNNNNGGC 1 cut(s) 238
BisI GCNGC 2 cut(s) 321, 350
BlsI GCNGC 2 cut(s) 322, 351
BmcAI AGTACT 1 cut(s) 93
Bme1390I CCNGG 1 cut(s) 259
Bme18I GGWCC 1 cut(s) 172
BmgT120I GGNCC 1 cut(s) 172
BmiI GGNNCC 2 cut(s) 173, 231
BmrFI CCNGG 1 cut(s) 259
BmrI ACTGGG 2 cut(s) 65, 178
BmuI ACTGGG 2 cut(s) 65, 178
BplI GAGNNNNNCTC 2 cut(s) 287, 319
BsaJI CCNNGG 3 cut(s) 257, 258, 308
Bsc4I CCNNNNNNNGG 2 cut(s) 292, 296
Bse1I ACTGG 2 cut(s) 71, 173
BseBI CCWGG 1 cut(s) 259
BseDI CCNNGG 3 cut(s) 257, 258, 308
BseLI CCNNNNNNNGG 2 cut(s) 292, 296
BseMII CTCAG 1 cut(s) 111
BseNI ACTGG 2 cut(s) 71, 173
BseRI GAGGAG 1 cut(s) 115
BseXI GCAGC 2 cut(s) 307, 336
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 2 cut(s) 305, 336
BsiSI CCGG 1 cut(s) 233
BslI CCNNNNNNNGG 2 cut(s) 292, 296
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 2 cut(s) 305, 336
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 110
BspLI GGNNCC 2 cut(s) 173, 231
BspMAI CTGCAG 1 cut(s) 354
BsrI ACTGG 2 cut(s) 71, 173
BssECI CCNNGG 3 cut(s) 257, 258, 308
Bst2UI CCWGG 1 cut(s) 259
Bst4CI ACNGT 2 cut(s) 287, 309
BstC8I GCNNGC 1 cut(s) 380
BstDEI CTNAG 2 cut(s) 37, 97
BstDSI CCRYGG 1 cut(s) 308
BstHHI GCGC 1 cut(s) 34
BstMWI GCNNNNNNNGC 2 cut(s) 238, 346
BstNI CCWGG 1 cut(s) 259
BstSCI CCNGG 1 cut(s) 257
BstSFI CTRYAG 1 cut(s) 350
BstV1I GCAGC 2 cut(s) 307, 336
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 308
BtsIMutI CAGTG 1 cut(s) 218
Cac8I GCNNGC 1 cut(s) 380
CfoI GCGC 1 cut(s) 34
Cfr13I GGNCC 1 cut(s) 172
Csp6I GTAC 2 cut(s) 92, 121
CviAII CATG 2 cut(s) 117, 250
CviQI GTAC 2 cut(s) 92, 121
DdeI CTNAG 2 cut(s) 37, 97
Ecl136II GAGCTC 1 cut(s) 303
Eco24I GRGCYC 1 cut(s) 305
Eco47I GGWCC 1 cut(s) 172
Eco53kI GAGCTC 1 cut(s) 303
EcoICRI GAGCTC 1 cut(s) 303
EcoO109I RGGNCCY 1 cut(s) 172
EcoRII CCWGG 1 cut(s) 257
EcoT38I GRGCYC 1 cut(s) 305
FaeI CATG 2 cut(s) 120, 253
FaiI YATR 7 cut(s) 9, 80, 118, 227, 251, 386, 388
FatI CATG 2 cut(s) 116, 249
Fnu4HI GCNGC 2 cut(s) 321, 350
FriOI GRGCYC 1 cut(s) 305
Fsp4HI GCNGC 2 cut(s) 321, 350
GlaI GCGC 1 cut(s) 33
GluI GCNGC 2 cut(s) 321, 350
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 233
HhaI GCGC 1 cut(s) 34
Hin1II CATG 2 cut(s) 120, 253
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HinfI GANTC 2 cut(s) 134, 155
HpaII CCGG 1 cut(s) 233
HphI GGTGA 2 cut(s) 246, 297
Hpy188I TCNGA 2 cut(s) 295, 371
Hpy99I CGWCG 2 cut(s) 273, 295
HpyAV CCTTC 1 cut(s) 35
HpyCH4III ACNGT 2 cut(s) 287, 309
HpyCH4IV ACGT 1 cut(s) 268
HpyCH4V TGCA 2 cut(s) 89, 352
HpyF10VI GCNNNNNNNGC 2 cut(s) 238, 346
HpyF3I CTNAG 2 cut(s) 37, 97
HpySE526I ACGT 1 cut(s) 268
Hsp92II CATG 2 cut(s) 120, 253
HspAI GCGC 1 cut(s) 32
LmnI GCTCC 2 cut(s) 229, 300
LpnPI CCDG 8 cut(s) 84, 92, 154, 244, 246, 271, 326, 364
Lsp1109I GCAGC 2 cut(s) 307, 336
MaeII ACGT 1 cut(s) 268
MaeIII GTNAC 2 cut(s) 181, 252
MboII GAAGA 3 cut(s) 24, 27, 158
MhlI GDGCHC 2 cut(s) 305, 336
MluCI AATT 1 cut(s) 161
MlyI GAGTC 1 cut(s) 143
MmeI TCCRAC 1 cut(s) 273
MnlI CCTC 3 cut(s) 37, 136, 289
MspA1I CMGCKG 1 cut(s) 140
MspI CCGG 1 cut(s) 233
MspR9I CCNGG 1 cut(s) 259
MvaI CCWGG 1 cut(s) 259
MwoI GCNNNNNNNGC 2 cut(s) 238, 346
NlaIII CATG 2 cut(s) 120, 253
NlaIV GGNNCC 2 cut(s) 173, 231
NmuCI GTSAC 2 cut(s) 181, 252
PasI CCCWGGG 1 cut(s) 258
PfeI GAWTC 1 cut(s) 155
PkrI GCNGC 2 cut(s) 322, 351
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
PpuMI RGGWCCY 1 cut(s) 172
Psp124BI GAGCTC 1 cut(s) 305
Psp5II RGGWCCY 1 cut(s) 172
Psp6I CCWGG 1 cut(s) 257
PspGI CCWGG 1 cut(s) 257
PspN4I GGNNCC 2 cut(s) 173, 231
PspPI GGNCC 1 cut(s) 172
PspPPI RGGWCCY 1 cut(s) 172
PstI CTGCAG 1 cut(s) 354
PvuII CAGCTG 1 cut(s) 140
RsaI GTAC 2 cut(s) 93, 122
RsaNI GTAC 2 cut(s) 92, 121
SacI GAGCTC 1 cut(s) 305
SatI GCNGC 2 cut(s) 321, 350
Sau96I GGNCC 1 cut(s) 172
ScaI AGTACT 1 cut(s) 93
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 1 cut(s) 259
SduI GDGCHC 2 cut(s) 305, 336
SetI ASST 6 cut(s) 29, 142, 154, 271, 305, 380
SfcI CTRYAG 1 cut(s) 350
SinI GGWCC 1 cut(s) 172
Sse9I AATT 1 cut(s) 161
SstI GAGCTC 1 cut(s) 305
StyD4I CCNGG 1 cut(s) 257
TaaI ACNGT 2 cut(s) 287, 309
TaiI ACGT 1 cut(s) 271
TasI AATT 1 cut(s) 161
TatI WGTACW 1 cut(s) 91
TfiI GAWTC 1 cut(s) 155
TscAI CASTG 1 cut(s) 218
TseFI GTSAC 2 cut(s) 181, 252
TseI GCWGC 2 cut(s) 320, 349
Tsp45I GTSAC 2 cut(s) 181, 252
TspGWI ACGGA 1 cut(s) 279
TspRI CASTG 1 cut(s) 218
VpaK11BI GGWCC 1 cut(s) 172
ZrmI AGTACT 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.